Array 1 82957-83716 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYBW01000004.1 Salmonella enterica subsp. enterica serovar Kedougou strain BCW_2713 NODE_4_length_209251_cov_4.34556, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 82957 29 100.0 32 ............................. CGGTTGCTGTCGTTGACGGCGTCGCGGTACAT 83018 29 100.0 32 ............................. ATGGAAAATATGAATTTAATGTTTATCCTGGT 83079 29 100.0 32 ............................. CCCCATATCCTTGATGAGGTAAATTTTTATTT 83140 29 100.0 32 ............................. TTTTACACACTGGCTGAGGGCGCATCATATCC 83201 29 100.0 32 ............................. ATTGTTATTGCGGTAACGGATAATTTATCATT 83262 29 100.0 32 ............................. CCACGGCGCGATTTGCTGTAGTTCCCGCGTGA 83323 29 100.0 32 ............................. ATCGCCGTGTTGGTCAAATATATGACGACTAA 83384 29 100.0 32 ............................. TTCGCGCCAGATTTTAGCGAGGTGATACAGGT 83445 29 100.0 32 ............................. TGCTGATGGTAGTGTGTTTGTGTTCCATGCTG 83506 29 100.0 32 ............................. TCTGTGTTGCTGCAAAAACGTAGGTGCCAGGG 83567 29 100.0 32 ............................. TAGCGGGAAGTGGAAACCGAATTGAACCATGA 83628 29 100.0 32 ............................. CATTGAAAACTATGTTCATGCCAGCATTTACT 83689 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================ ================== 13 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCATTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGCCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 99973-101344 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYBW01000004.1 Salmonella enterica subsp. enterica serovar Kedougou strain BCW_2713 NODE_4_length_209251_cov_4.34556, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 99973 29 100.0 32 ............................. GGCTTTATAAACTGGGCCGCATAGCTTGGGCT 100034 29 100.0 32 ............................. CGCTGTGCTAACAGCCCCATGTCGTATCCCTG 100095 29 100.0 32 ............................. GCAGGTACTGAATCGCGGCGGATTCGGCGACA 100156 29 100.0 32 ............................. ACCCGGTTTTGATAGTCGTCCCAGCTATCTCC 100217 29 100.0 32 ............................. GCTAAATGAGTATTACGGCACGTCTTACGGTT 100278 29 100.0 32 ............................. TGTCGATATATTCACGTACCTGTCCGGGGTAA 100339 29 100.0 32 ............................. ATTCTACCTGGAGCGATTGCTACGACTACACC 100400 29 100.0 32 ............................. TTACTCGATCATCTAAACACCCCTCCGGACCA 100461 29 100.0 32 ............................. CCGCGTAGAGAGTTGATCTTGTCGCAACTGGA 100522 29 100.0 32 ............................. GATCTGATTCAACATGTAAGAGTCGTACAGGA 100583 29 100.0 32 ............................. CTGCGCGACAAACGCCATACGCAGGAGGAAAT 100644 29 100.0 32 ............................. TTCAATGCTAAATCAGGTCGCCGCACCGAGAT 100705 29 100.0 32 ............................. GCCAGTCATTTGCTGGCCAGATCTGAAAAGCA 100766 29 100.0 32 ............................. GCGCTACAAAAACGAGGAATATCGTTAAACGA 100827 29 100.0 32 ............................. TTTTCTTTTCCTGCCGGAACAGCGCTTTTTCA 100888 29 100.0 32 ............................. AGTTCAACCGATTTTTTACACGGCGTTCGCAC 100949 29 100.0 32 ............................. AGCCCAAACTGCGGGATAAAATCTTATTCAGC 101010 29 100.0 32 ............................. AATGGGCGGGCGTGCGGTCCCAGTTCGTTGAT 101071 29 100.0 32 ............................. CTCCACGCGTTTGATCTCCCGCTGGTACTGGT 101132 29 100.0 32 ............................. ATATTTTGGCAACTCGTCGTACATTATCGCCA 101193 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 101254 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 101315 29 96.6 0 .......T..................... | A [101342] ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTACCGCCAGCGATACCAGAACCTGAATCCCTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGACTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGATAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCTATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //