Array 1 1850829-1848866 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040235.1 Bifidobacterium longum strain ZJ1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 1850828 36 100.0 27 .................................... CCCCTTTAATAGTGCGTTTCCCCTACT 1850765 36 100.0 28 .................................... CGGTGAACGTGCATGTTGCGGAATGTTC 1850701 36 100.0 28 .................................... GCGACCACCGACGGCACCCTGACCATCA 1850637 36 100.0 28 .................................... AAATCGTATCCACCTTTAACCCACACCA 1850573 36 100.0 28 .................................... TCGTCTTCGGTGCCCACTCGCGTGCAGC 1850509 36 100.0 29 .................................... ATTCATGACGCTTCGGGTGCTGTTGCCGT 1850444 36 100.0 29 .................................... GTGAGCTTGTCCGTGTCTTTCATCAGTGG 1850379 36 100.0 28 .................................... TGTTTACGCTCAAAAAGCACATTAGATT 1850315 36 100.0 28 .................................... CCGAGGCCGGTAGGGTTGCGTGTCTGGT 1850251 36 100.0 28 .................................... GTTGTAATCGGTCATAATAGTTTTCAAT 1850187 36 100.0 28 .................................... TCTCCCAGTTGCTGCCCCTTGGCGTCGA 1850123 36 100.0 28 .................................... CGTATTCATCGTGGCCTCTTCGCGGTTT 1850059 36 100.0 28 .................................... CGTACATGATGGGGTCCTTGACCTTGTA 1849995 36 100.0 28 .................................... TTGGTGGTGTTGGGCGTCCGGCGCAGAA 1849931 36 100.0 28 .................................... ACAGTATTATTGTCCTGATATTCATGTC 1849867 36 100.0 29 .................................... TCGTCGTCCATCTCTGTACCTCGGTTTCT 1849802 36 100.0 28 .................................... TCCATGACCGCGTCCATCACCTCATGCC 1849738 36 100.0 28 .................................... CGTTCCCCAGTGGGGTGAGTGTGATGCC 1849674 36 100.0 29 .................................... ACCGATTGCAACGCGAATATCCCGGGTAT 1849609 36 100.0 28 .................................... GTTGTTCCGGGAACAACTGGGAACAACT 1849545 36 100.0 28 .................................... CTTGCCTCCGTTCTGCATCCAGCTGTCG 1849481 36 100.0 29 .................................... ACGCGGCGAAGAATCTTGTTATCGCGGCT 1849416 36 100.0 29 .................................... GTCGCACGTGGCATGGCATGTTGGCGAAC 1849351 36 100.0 29 .................................... TGTTGAGGGGAACCGTATCAAACCTGATT 1849286 36 100.0 28 .................................... TGGTTTCCGTGCCGCATTGGTCGCAGTA 1849222 36 100.0 29 .................................... TCATGGGACTGTGAGCGGCGGCGGCGTGA 1849157 36 100.0 28 .................................... TAGAAGTGCAGATTCCGTTCCTGCAAAC 1849093 36 100.0 28 .................................... AGGACGTGCAACGCAAGTATTTCAAGAT 1849029 36 100.0 28 .................................... TCGTCGATGTGTTCCAAGAGGTTTGGTG 1848965 36 100.0 28 .................................... TATTGTTCGGGTGCGATGGTGATGATCA 1848901 36 86.1 0 ..............................TTG.AT | ========== ====== ====== ====== ==================================== ============================= ================== 31 36 99.6 28 CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Left flank : ATTCAACGGTTCCGGTTTGACTATACCGAGCTCATTGAATGATTTTGCGCAGCAATTTGGTTTATATTGCGAAGGCAAAATCGACAGGTTGCAGGTTCCCGAATATGTAGGCGAGTCATGAAACGCGATGAGGACAGTGGCGGCATGTGGTGCTTGGTGATGTTTGATTTGCCGGTCAAGACAAAACGGCAACGGCATGCTGCAACTGTCTTTAGAAATATGTTGCTCGACATGGGATATGGAATGGTGCAGTATTCCGTATATGTGCGGTATACGCCTACGCAATCGGGTAATAGGGCGACGGTCAAAATGATTAAAGACAATCTGCCAGCTAATGGCTTAGTTAGAATTTTGCATATTAGCGATCATCAGTGGTCCACGGCGGCCCGATTTTCTTCTGGAAAACGTGAGATTGAGGAAGAAACGCCTGACTTTCTCACGCTTTTTTGAACGTAGGAGAGTCTGAAAAGATTGAAAAATAGCCCTTCTTGATAGGCTAT # Right flank : GCTGGAATGCTTGGGTTGATTTGGCTGATTTAGCTGTGATGGCCGCTGCGGGAATGGCCCTTGCGCGGTTGGCGGCAGAGGTTGCGGCGCGGATTGCGGCACTGATTGTTGTGCCAATTGCGTCTGCGGTGAAAAATATGGCGACGGCTGTGTCTGACTGTTTATCGGCGGATGTTCCGGCTCAGGTTGTGGCTGGAATGGAGAATATTGCGGTTGCGCCATTGTATGCCCCTGCCCCTTCATTGCCATTTCATTGGCGCATGGCGAGGGCTGAAAACCAAGATGATGAATCCTGCATGAGTTATCCGTGATTCCTGTGCGTTGGTACAGCGCGGAAGGTTGAGCAGCCGACATATGCAGGCTTGTCGGTTCACGCGAATATCTTTAAACCTATGACTTCCAATACCCTTCGTATGTCAACCATGTTCCTGCGCACCCTGCGCGAGGACCCCGCTGATGCCGATGTCGATTCAGCCAAGCTGCTGCAGCGCGCCGGCTAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.30,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 2 2059361-2059705 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040235.1 Bifidobacterium longum strain ZJ1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ====================================================== ================== 2059361 27 66.7 39 G..C....C.....C...GCC....GA ACCGCCACGGCGGTCATCACGATCGCCACGGTCATCGCG 2059427 27 96.3 54 ........................A.. ATCGTCACGGGAGTCGCGAGCATCACGGTCATCGCGATCGTCGAAGTCACGGTC AGA [2059433] 2059511 27 81.5 33 GG.A..A.................A.. ATCATCGCGATCATCGCGATCGAAGTCACGGTC 2059571 27 100.0 21 ........................... GTCGTAATCATCCTCGAAGTC Deletion [2059619] 2059619 27 100.0 30 ........................... GTCACGATCGTCGAAGTCACGGTCATCGCG 2059676 27 81.5 0 C.............C.....C....CG | GC,C [2059693,2059697] ========== ====== ====== ====== =========================== ====================================================== ================== 6 27 87.7 36 ATCGGAGCGACGGCGACGCGGACGGTC # Left flank : GACTGTGGCCGCGCTGTTCATTCTGGACTTCGTGTGCATGGCGATTCTGTAACGCTGATTGACAACGGATTAGCCTTTAAGGATTAATCCGCCGCCATACGGCATAAAGGCCGGGCTCTCACAAGGGCCCGGCCTTTGTTGTTGCCACAGTGATCAACGCCCATGAGTACCTTCGATGATCATCCGCCATTCTTGATGCATGGGAATAGTTGTCAACCGACAACTAAACGTACATGGCGGCAGCACGAGTGCCTTATTCAACATCGAAATATGCAGCGCGAAGAAGCCGAAAAACCAAAAAGGCTTCTATACCGAATGAAACGGTATAGAAGCCTTTTGGTTTGCGATCAAGCCCTTCTCACCCGAGAGAAGCTAGAGAACGATCAGTCCTCGAACGGATCAAAGTCGCGACGGACGCGGCGACGCGGGCGCTCAGTACGCTCTTCGCGGTCGGCGCGGTAGTCGTCGTAGTTGTCGTCGGTGGCGTAGCGCGGGTTACG # Right flank : GATCGTCACGGTCACCACGGCCACGGCCGCCACGGCGGTCATCGCGATCGCCACGGCTCGGGCGGGCGTTGTTCTCCTGATCCTCGAAACCAGGAATGGCCAGGGAGATCTTGCCGCGATCATCGACACCCTGAACGATCACCTCAACGGTGTCGCCTTCCTTGAGCACGTCTTCGACAGCGTCAATACGCTCGCCGTTGGCCAGGTTGCGGATCTGGGAGATGTGCAGCAGGCCGTCGGTGCCGGGGGTGAGGTTCACGAAAGCGCCGAACGACGTGGTCTTGACGACCTTGCCGTTGTAGGTTTCGCCGGCCTCGGGCACGTGCGGGTTGGCAATCTGGTCGATGATGGCCTTGGCCTTCTCAGCAGCCTCGCCACCCTCGGAGGAGATGAAGACGGTACCGTCATCCTCGATGGCAATTTCAGCGCCGGTGTCTTCCTGAATCTGGTTGATCATCTTGCCCTTCGGGCCGATGACTTCGCCGATCTTCTCAACCGGG # Questionable array : NO Score: 4.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.45, 5:0, 6:0.25, 7:-0.43, 8:0.6, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGGAGCGACGGCGACGCGGACGGTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,0] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGAACGACGGCGACGCGGACGATC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //