Array 1 47695-47210 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI260566.1 Treponema lecithinolyticum ATCC 700332 Scaffold61, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 47694 31 100.0 35 ............................... GCTCGACTTAGCTGTCCACGTGTTACCGTCATCAG 47628 31 100.0 36 ............................... TGTTGCAGCTCCTTAGTCCAAGCCATTTGCTCATTA 47561 31 100.0 32 ............................... CTACGCTGATAATAAACTTGTCGTTAAGTCAG 47498 31 100.0 34 ............................... TGAGGGTACCAATATTACCGGTATGTACCGGGAA 47433 31 100.0 33 ............................... TGTTTAACCGTCGCTAGCGGTCAAACAGTTTGT 47369 31 100.0 32 ............................... TGCGAGTGCAGCTGGGAAAGCTATCGGCTTAA 47306 31 96.8 36 ......................G........ GGATAAACTCTTTTTTGGACATCCGAACCCTTCCGA 47239 30 93.5 0 ............-.....T............ | ========== ====== ====== ====== =============================== ==================================== ================== 8 31 98.8 34 GTCGCTCCCTCACGGGAGCGTGAATTGAAAC # Left flank : GACGGCTACCCGGTATATCTTTGGAAGTAAAAAAGGGGGCGCGCGATGATGATGCTGGTAAGTTATGATGTGGCAAAAGATGAAAAAGGGGAAAAGCGGCTTCGGCATGTGGCAAAGATTCTTGAAAATTACGGACAGCGCGTTCAGTATTCCGTATTTGAATGCTTGGTCGATCCGGCGCAATGGGTTGCACTGAAAAGTAAATTGCTCACTGAAATAAATCCGAATTACGACAGTATTCGTTTTTACGCGCTCGGTGCAAATTGGGAACGTAAAGTCGAACACGTAGGGCAAAAAAAGCCGATCAATCCGCAAGGCGTTTTGATTTTATAATCGGATTTCCTGCCGCGAACGGGAAGTACACATTGATTATTCATTCCGCTTGAATTTTATAACCTGTTATATTATAGTGAATTAGATATTGACATTATAGTGTTCGAACTAAGTTCGCGGAAATTATAGTGTAAATATCAATATTACAAAAAAATAACTGCTATACC # Right flank : ATCTGCGGGCGTTGCCGAAACAACGACACCGAATTTCAACCCCTTATCTGCGCTTGAGTCGACAATTCCGCCGATTTTGAGGTAACCTTCCTGCAAAGGTACAGCCTGCGCAGTAAGATTAAGGTCGCCTCGAAAACCGATTGCTAATTTCATGTTTTTATCCATTTGTTACCTTCCTTTTGCCATTTCAAAAAGCGCGCCCAAACTGCCTTCTGTCGGCTTAACCGCCCCGCCGAGCGTTACCGGAATCTTAGGCGCGCCGTCCGTTGTTATTTCGTCTTTATTGTCATTTGCATTATCATCGGAACCCGCTTCTTCTTGTGCCCGTTTTTTTACATATTGGTAAATTTCTTCTAATGTCGGACTTTTTTTAGGTTCTTCATCTTCGACTTTTTTTTCATCATCCGGTGCTTTGGTTTCATCTACGACTTTTTTTGTAGAATCATCATCTGCATCGCTCGTCGAAGTGTCCTTTTTAATCTCGTCTTCACCCGCCGTAC # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTCACGGGAGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.42 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 187754-188050 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI260567.1 Treponema lecithinolyticum ATCC 700332 Scaffold69, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 187754 35 91.7 30 TA..-............................... AAAACCATAAAACAAACGTTATCACAAATG 187819 36 100.0 30 .................................... TGTTATGCGAGGAGAAAGAATAAATGACAG 187885 36 100.0 28 .................................... TTGCCTTTTAGGTCTTTATTGTAATTCG 187949 36 100.0 30 .................................... ATCACCATACTCACCGCAAGCAATATACTT 188015 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 98.3 30 GTTGCAGGTTGACCAGAAAAATTAATCAGTTATAAT # Left flank : AATAGCGGTCGTAGTAGCCGCCGCCTCTGCCGAGCCTGTGTCCTGCTTTATCGAATGCAAGACCGGGTACCAGCACCAGTATCGGCGTATGTTGTTCGGCAACAAAGAGGGGCAGGGTATCAAGCGGTTCTTGTATGCCGAAAACACCCGCTTTAAGCTGTGTTTCCACCGGACAGCATGGCTTAAGTATAAAAAAATCCATATTTTTATCGGTTTTATGCCGTATTTTGGGAAGCGCCGTTGTTTTTTTGTCGTTTAAGCATTGGCGTATAACGGCAGCTGTCGGAGCTTCTTCCGGTATGGATGCGTACACTAAAACACTTGCGGCGCTTTGATATGCCGTGCACTGTATTAAAGAGTTAACAAAAGCCGCTTCTTTTTTACCGGTGCCATTTTGCTGATTTTTTAAAAGTTCGCGCATTTTTTGCCGCAGCGCTTTTTTTTGTTCTTGTATCATTGCTCTTCAGTATACACGTTTTTCCCAAGATTTCAATTGAAAC # Right flank : TAGCCTAAAAGTGGTATCATCATCAGGGAAAGTTGCAGGTTGACCAGAAAAATTAATCAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGTTGACCAGAAAAATTAATCAGTTATAATCGGGTAGCCCGTCACATCCTCTACCCGGTCGTTGCAGGTTGACCAGAAAAATTAATCAGTTATAATTTGCCTTTTAGGTCTTTATTGTAATTCGGTTGCAGGTTGACCAGAAAAATTAATCAGTTATAATTTTTTCTTTCAAAAATCGACGGCTTCGCCGGTTGCAGGTTGACCAGAAAAATTAATCAGTTATAATTTGCCTTTTAGGTCTTTATTGTAATTCGGTTGCAGGTTGACCAGAAAAATTAATCAGTTATAATAAATATATATTACAAGACACAAGTGGAAAGGTTGCAGGTTGACCAGAA # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGGTTGACCAGAAAAATTAATCAGTTATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: F [matched GTTGCAGGTTGACCAGAAAAATTAATCAGGTATAAT with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.30,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 188206-188633 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI260567.1 Treponema lecithinolyticum ATCC 700332 Scaffold69, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 188206 36 86.1 30 NNNNN............................... CGGGTAGCCCGTCACATCCTCTACCCGGTC 188272 36 100.0 28 .................................... TTGCCTTTTAGGTCTTTATTGTAATTCG 188336 36 100.0 30 .................................... TTTTTCTTTCAAAAATCGACGGCTTCGCCG 188402 36 100.0 28 .................................... TTGCCTTTTAGGTCTTTATTGTAATTCG 188466 36 100.0 30 .................................... AAATATATATTACAAGACACAAGTGGAAAG 188532 36 100.0 30 .................................... AAGAACCGGGAACGGATTAGCTGCATACCA 188598 36 86.1 0 ...............................NNNNN | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 96.0 30 GTTGCAGGTTGACCAGAAAAATTAATCAGTTATAAT # Left flank : ATCATTGCTCTTCAGTATACACGTTTTTCCCAAGATTTCAATTGAAACTATGAGGTTGACCAGAAAAATTAATCAGTTATAATAAAACCATAAAACAAACGTTATCACAAATGGTTGCAGGTTGACCAGAAAAATTAATCAGTTATAATTGTTATGCGAGGAGAAAGAATAAATGACAGGTTGCAGGTTGACCAGAAAAATTAATCAGTTATAATTTGCCTTTTAGGTCTTTATTGTAATTCGGTTGCAGGTTGACCAGAAAAATTAATCAGTTATAATATCACCATACTCACCGCAAGCAATATACTTGTTGCAGGTTGACCAGAAAAATTAATCAGTTATAATAGCCTAAAAGTGGTATCATCATCAGGGAAAGTTGCAGGTTGACCAGAAAAATTAATCAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTTGACCAGAAAAATTAATCAGTTATAATACGTCCGGCACAAATCATTATAATACAAAGAAATGGTTTGTTCCGGACGTGTTATTTTTAAACGAAAATCAGAATAAAAGGAATTGATCCGGCTGCTTTTTTTGTCGTTTTTCCCCTGCATTATAACTAATGATATTGCCATATTGTCTGTCCGTTATTGTAATAATATCAACTTTTCCCTTTGTCGGCAAGTTATCGTGTATCATCCTGTAGTATTTTTCACAGGCATCTTTTCCCGAAAATAATTTTGTATAAATCGAATATTGTACCATTGAAAAGCCGTTATCTAATAAAAAATTTCGAAATTCCGTAGCGTCTTTTCGCTCTTTTTTTTCAATGACCGGCAGGTCGAATAGCACCATCATCCACATAAG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGGTTGACCAGAAAAATTAATCAGTTATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTGCAGGTTGACCAGAAAAATTAATCAGGTATAAT with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.30,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [5-5] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 346574-346859 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI260564.1 Treponema lecithinolyticum ATCC 700332 Scaffold48, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ================================== ================== 346574 31 100.0 33 ............................... TTTAGTATAAGCAAACTGACGATTGAAAATATC 346638 31 100.0 33 ............................... GCTTTTCAGTGTAGCTATATCCGTTTGCTCGTT 346702 31 100.0 34 ............................... TGTCATCAAACGGCGGGCGGGATTTTGGTACCTT 346767 31 100.0 33 ............................... GTGCGTGGAAAATGATAAAACGCTCGGAGCGAG 346831 29 90.3 0 .....................-....-...G | ========== ====== ====== ====== =============================== ================================== ================== 5 31 98.1 34 GTCGCTCCTTCACGGGAGCGTGAATTGAAAC # Left flank : CTCGTTCGGGACGAGGAGGCCGTGGGTTCAAATCCCACCTGCCCGACTTTTACAAATTGTGAATTCTTTGTGGTATAAGAAATTACACTGATTTAAAAATCGTAAAAAGCCCGTGTATACAGAATGTATACGAAACGTTCGCAAAAAGACGATGGGACGGTATAGGGAATACTTTACTCTTTATTATCGGCTGCGCAAAACGGCACAAAAATCTGATACTAGGACGTACAGTCCTGACGGGGGGGCACACGTGCGGAAAATCCATCGGAGATGCAGCCTTTCAAATTGGGAAATTCTATTAAATTATTTTAATCCTGCTATATGATAATTTTGTTTTCGCGAACGTTAAGTAAACGGTCGTTATTATACTGATTGTTTTTTGTAAAGTACCGTATTATACTGAATTAGGTATAGCACTTGTATAGTATTCGCGGTTATGAGCTGGATTCGCGGAATTTGCTTTGTAAATGCCGGTATTATGAAAAGATAGGTGCTACACA # Right flank : GGATTGTGGAAATGAGAATATTTGGCGGAAGTTCACCCCGTGAACTTGAAGTTTTGAACGGTATACATTATGGTACAAAAATAAACAATTATGAAACTTTTACTTGCACCGATGGCGGCTATCAGCCACGAAGCGCTCAGGCGCACTATCGCACGTTTCGGCGGATGCGACGAATACTATACGGAAATGATTCACGCTTCATCGTTTATAAACGGCGGACCGTATGAACGTTATTATGGAAGCTGCGAACCGGAACGAAAAAAGACAGTGTGGCAGCTGACCGGAGCCGCTATACCGGAGTTGGTGCGCTGCACGGAGCTGCTTATGCAAAGCGAATGTTCTTCGTCTGTAATCGGTTTCGATATCAATATGGGCTGTCCTGCGCCCGAGATTTACCGGCAGGGTGCGGGTATTGCATGGATGAGTAAACCGCCGGAGCAAGTTGAAGCTATGCTGTGTGCTGTACGCCGTGCGTGCAAGCAAAAACGCTTAAGCGTTAA # Questionable array : NO Score: 8.96 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCTTCACGGGAGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.90,-5.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA //