Array 1 3800-4055 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRZX01000028.1 Ruminococcus sp. AF13-37 AF13-37.Scaf28, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 3800 37 100.0 35 ..................................... GTTTTTCTTCATAGTACATCGTTCCTTTCTTCTTT 3872 37 100.0 37 ..................................... AGCTATTCATTTTTCAGATCAGAGTTATATGACGGAT 3946 37 100.0 36 ..................................... TTGAAGAGCTGAAGGTAGTTCTAGTGTTATCAGATT 4019 37 97.3 0 .........A........................... | ========== ====== ====== ====== ===================================== ===================================== ================== 4 37 99.3 36 GTAGAAATGGAAGTAAGCCCGTTGAGGGCATTGACAC # Left flank : ATTTTGATGATTATTCATTGGACGAAGTATTGAAAAAATCTAAAATACGTGTTAAATGGAATGAAAAATTTGAACAGATTCAAGATGCCAAAAAAGAATTTTTAAATTTAAGAATTGTAAGATAATACCAAATTGAAAAACTTAAGTTAACTTGATTTATAATATAAATAAATGTTAGCGTCGGGCGGACTTTCGTGGTCTGACACTGCGAAGTACAACTAAAAAGGATAAAGCAGAGCTAAAAGATTTATAAAAGAATTATAAAATCGGAAATAGAGTGGAAAGAGAAGAAAAAAGCCAGAGAAAATTTGGTAGGAAATTATAGTGCGAGTTTATTGACAAAAGAGATAAGAGGACATATGATAGTAGTGTATGAGCTGAAGGATTTTTAGACGAGCACTAAAAAAACAGTAAAAATAGTAATTTACAGAAAATTCAGTTAATTACTTGTAAAAATAGCTCTCGGAAGCCAGTAAAATCAAGGGTTCCGAGAGGCTACC # Right flank : CACTTCTGGCAAGGATATCGGTGATTGCATAGTCAACAGTAGCTGAATGCCTGGGTCAGACCGTGCGTCCAGCAAAGGGAATGCAATCCGACAGGTGGAAATCCTGCCAAATAAGCTGTTAACCACAGCATTTGAAGCGAGTTTTGGGTGCGTTGCAGTAATGTAACGTGCTAAGCGTAGACAGCAAGGTAGTAGGGATAGTTATTGAGCACCGAAATCCCAAGTATTTCCAGAGTGCCGACTCTGAAGGATATTGAAGTCTGACACTATGAAGTACAGACGCTCATGCATTTAAACGTTACGGAAGTTCTAAGAGTAAAGTATTCGGCAAATGGTCCAATATTAAGAAAGTTGTTGTGAAATAAAAGTATGTCGGGGTCTGACCCCAATGTTGGGAACTTAGCGTCAACTTAAGGACTTTAAATCGATTTATTTGTTCTTTGAAAATCAAATAGTAAAAATATACAATTTCGAGCGTAAAATATCAGCACTATGTCTAC # Questionable array : NO Score: 2.82 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGAAATGGAAGTAAGCCCGTTGAGGGCATTGACAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.10,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 21039-21499 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRZX01000010.1 Ruminococcus sp. AF13-37 AF13-37.Scaf10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================================= ================== 21039 30 100.0 40 .............................. AAAATGTCGTTTACCATGATTTCTAATGTCATAATGGTAG 21109 30 100.0 42 .............................. GTTTGGGGATAGATTAATTATTCAGATTTTAAATTTTTAAAA 21181 30 96.7 49 A............................. CTTCAATGATATTTTCAATGAAGCATTTAAAACTTTCAGTATCATCGAG 21260 30 100.0 43 .............................. ATACTCAGCCTCCAATTCCTCTGGATTAACATGCAAGATTACT 21333 30 96.7 45 ....................A......... AATTTACTATGATAGCATAAGCTCCATCCAATTCCGATTTTCTGT 21408 30 100.0 32 .............................. ATAAAAAGTGTTTTTGACTGAATTAAGAACAT Deletion [21470] 21470 30 90.0 0 C................A..........G. | ========== ====== ====== ====== ============================== ================================================= ================== 7 30 97.6 42 TGTTGTACCGTACCTAAGAGGAATTGACAC # Left flank : GTATGGTAACCCAGGGACTTGGATATTCAGGCAGAGCCGTTTTCTCCGGCGTAACAGAAATGATCGCCAGAACAGTTGTCTGTCTTGGATTTGTAGGCACTTTTGGCTTCACAGCCATCTGCTTTGCAGACCAGACTGCCTGGATCACAGCAACCTGCTATATTTTCCCGACATGCCTGTGGTGTATCCGAAAGTCTGCAAAAATGCTTGTCATCAATAAAAAGTCCGTCGACCTTTAAAACCAGTAAATACAAGGGTTTATGGGAATTGTAAAGGAAAGAAAATTACAGATTAGGATAGAAAAAAGCTGAAATATCACAAAAAAGACTGTCGACTTCAAATGAGAATTTTTTGATGTAGAAAAAGGTCTGGAAATACTGAATTATATGGAAATAATAAGTGTCAGGCAGGAAAATAGGTCGACGGACTTTTTGGAAGAAAAATGGTTGAATTTCTGAAAAAAATATAATACTATATTAATAATAGCAGGAAAAGACTGC # Right flank : CATGTCAATACCCAAAGTGAAAAACAAAGGTAATTTACCTAAATACGAGAGTCGTATCGTATCGCATATTTAAAGTAGTAATGAAAGGTTTAAAATATTTATAAAAGCATGTTTAAGAGATGGCATTTTGAGGACTTTTGTTTATGAGTAAGCAGCGAGTTAAATAGAGGGCATTCGTTTAGTTACAGGAGTATAATTGTGGAAGTTAGGATTGAAAATATTCTGTCTGATGAAAATCTGGCATTGGCAAGGGAATCTTTACAGGGAAAGCGAGATAGCTGTGGACTTGATGGAATCAAAATATCAATGTTTGATGATTATTGGAAAGTAAATGGGGATAAGATAAAGCAGGAAATTTACGTCGGGAAATATGTTCCCGGCGTTGTTAAGTTACACGAAATTGTTAACGTGAAACAAAAAAGACGCAGTATTTCATTGATGAATACGGTGGATCGTTTTATATATCGGACTCTTATGCAGGAGATGAGTCGTTTTGGAGA # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTTGTACCGTACCTAAGAGGAATTGACAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 2 22423-23143 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRZX01000010.1 Ruminococcus sp. AF13-37 AF13-37.Scaf10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================== ================== 22423 29 100.0 34 ............................. GCTATAATCTGATAACCTAGCTGCCTAGTCTCAA 22486 29 100.0 43 ............................. TAGACTGAGTAACTGGGATTTCATTCGGAGACTGGGTTTGCAA 22558 29 100.0 39 ............................. AATTCTGTTGTTATGTACTGCTACATTTATTCTTGTTCT 22628 29 100.0 35 ............................. AGGTAAACCTGGCTTTTCATCGTATTTCTGAGGAT 22692 29 96.6 40 ...........T................. CTGAAGGAATCATTTTATAAAGATTGTGTACGAGTGATAT 22761 29 96.6 40 ...........T................. CTGAAGGAATCATTTTATAAAGATTGTGTACGAGTGATAT 22830 29 100.0 42 ............................. ATGTAATTTCCTTCTTTCTTATAATCGTATGGCATCAAAAAA 22901 29 100.0 46 ............................. TATAGATAAGTCCTTTTGTAAGTAATTTCTGTATTACTTCCTGACT 22976 29 96.6 43 C............................ GTTCTTTCTGTGTTACAGGATCATATTCTGCTTTGTAATTAAA 23048 29 100.0 38 ............................. TAAATACTCATAGTATCTTACGTATGTTGATGTTAAAT 23115 29 93.1 0 ..........................T.T | ========== ====== ====== ====== ============================= ============================================== ================== 11 29 98.4 40 GTTGTACCGTACCTAAGAGGAATTGACAC # Left flank : GCAGTATTTCATTGATGAATACGGTGGATCGTTTTATATATCGGACTCTTATGCAGGAGATGAGTCGTTTTGGAGAATAGTAGATAGAACTTATAGGGTTATACAAGGAAAAGAACAATTACTTTTAAGAAAATTGGAAGAAGTATTTTGAAGTTTTGATAATATACATAATGTAACTGTTTGAAATACAACAATAAGACACATTCATATGAATGAAAAAAGTCCGTCGACCTTTAAAACCAGTAACCATAAGGACTTGCGGGTGATGAAGAGGAAAGAAAAATACAGATTAGAACAGAAAAGTGCTGAAATCTTACAAAAAAGACTGTCGACCGAGAATGAGAACTTTTTTAATCTGGTAAAAAGTCTGGAAATACTGAATTATATGGAAATAATAAGTGTCAGGCAGGAAAATAGGTCGACGGACTTTTTGGAAGAAAAATAGTTGAATTTCTGAAAAAAATATAATATTATATCAATAATAGTAGGAAAAGACTGCT # Right flank : TGGGGTAGGACAATCATAGTTAATTATATAAGTAAGAAATATTTGAAAAAATGTTAAGAAGTCATTTTCTTACCCATATGTATAAGTGCAGCAGTAAAAAAGAATGCAGCATAGGACTTAAACTATATCTGTAAAGTGAAGTTTGAGACTTTTGCATATTGGAGGTTAGAAGAAATGAAGAAAAAGCAGAATGCAGATAAACTGAAAATATATAATGCGAGTCATGGAACAGAACGAAAATGGGTATTGGAAAAAGGAAATGTATGGACTCGACCTACTATGAGTATGGAATTAAAATCTCAATATCATAGAGAACGCAGTAAGAAAGAATTTAGAAAAAGGCTGGAAGAATACAAGAATTAAAAAAACTGCTTCAACAACACCTGCTAAAAGTGACATTGAAGCAGTAGTCATAAATCAGGAAGACTGTTTATTTGGGTTTAGTGCATCAACCCATTTCATGTAATACTTTAGTGAGAGAATGATGGCCTCCGGTTGAT # Questionable array : NO Score: 3.18 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTACCGTACCTAAGAGGAATTGACAC # Alternate repeat : GTTGTACCGTATCTAAGAGGAATTGACAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 7294-7914 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRZX01000003.1 Ruminococcus sp. AF13-37 AF13-37.Scaf3, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================================================================== ================== 7294 36 100.0 30 .................................... AATTTACGATGCTGACCCGGAACAGTGGGA 7360 36 100.0 30 .................................... GTCTCGCCCTACGGCATAGGGCAGGCTATT 7426 36 100.0 29 .................................... CTAACAGAGAATGGTTAGAACTGATTGAA 7491 36 100.0 30 .................................... AAACGTTATCTGATTGCAGACGCAGCCGCC 7557 36 100.0 30 .................................... GATGTATCAAAATCGGCGTACATACCGCGC 7623 36 100.0 30 .................................... TAGACAGTCGTGGAATTGAGCGAGAGACAA 7689 36 100.0 29 .................................... GTGTCATCTGGATCATCTTTAAGACCATG 7754 36 100.0 84 .................................... TAAAAAGTTGAAACGCTCCACACCCCCTTTGTTTGAGAATGATGTAAATAAAAAATATTTTCGATGAAATTTATCGGGAGTGAT 7874 35 91.7 0 A............................-.G.... | AA,AAA,A [7899,7902,7909] ========== ====== ====== ====== ==================================== ==================================================================================== ================== 9 36 99.1 37 GTTTGAGAATGATGTAAAAATGTATGGTACTCAAAC # Left flank : AATTATAAATAAACTGTATTCAGAATTGGTTAAGGTATCCGCATCAGAAGTGATGTATGAAAGGACAGCAGAACTTACCAGATATATATCAGATTATATTATGGATTTGGAAGACAGTGCAAATTATGCAGTTCAATTTTCTGATCGCTTGGATATAGCTGGTCTATTAAAAGCTATGGATGTAAAATATGAGGAAATTGAAGAATCATTGTTAGAACATCTGATAAGATATATAAAACTTGTTGTGGAATTATTAGGAGTGAAGCTTATTATATTTGTGAATCTCAGAAGCTATTTAAGTGACCGACAATTTAGGGGGTTAATACAGGAAATAAAATATCAGGAAATTAAAGTGTTATTTATTGAAAATCAAGAAAAGGCTTGTATAGAAGGGGGAATGCGATATATTATAGATAAAGATGGATGTGAAATTTATTAATGGTGGTTTGAGTACCTTATTTTGTATATGCAAGTGATGGCATATTATTTTTGAATTTGAG # Right flank : CAATAATTAGACCAGAAAAGAAAGTGTAGGACAATAAAATGAAGTTAGGTATCCTGGGAGCAGGAGGCATTGCTTCTACTATGGCGAAAACAGTGGCAGGAATGAAAGATGTGGAGGCGTATGCGGTTGCTGCCCGTGATCTGGAACGTGCCCGGGTATTTGCACAGAAATATGAAGTAAAAAAAGCATATGGATCCTATGAGGAAATGCTGGCAGATGATGAGGTTGAACTGGTTTATATCGCAACTCCTCATTCACACCATTATCTGCATGCAAAGATGTGTCTGGAAGCGGGAAAGCATGTGCTTTGTGAAAAGGCATTTACTGTAAATGCAGAGCAGGCACAAAAATTGTTTGACCTTGCAAAAGAGAAAAAGCTTCTGATCACAGAAGCAATCTGGACAAGATATATGCCGTCCAGAAAGATGATCAACGATATTATTGAAAGTGGTGTGATCGGAGAAGTTACGGCAGTTACTGCGAATCTCAGCTATACAGTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGAATGATGTAAAAATGTATGGTACTCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //