Array 1 81209-80204 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGINQ010000019.1 Azospirillum soli strain CC-LY788 Ga0451091_19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 81208 29 100.0 32 ............................. AAGGAACGGTCGAGTGACGCTCCCGCTCCTGC 81147 29 100.0 32 ............................. GCCCACGCGTCGTACGCATCGATCTGTGGTCG 81086 29 100.0 32 ............................. CAGCAGGACAGCATAGGGCTGGAGACGGTCGC 81025 29 100.0 32 ............................. GTGTGCTTCCCCTGAGCGATGGCGTTGGGGTC 80964 29 100.0 32 ............................. ACCACATCGACGCCACGTACGTCCGCCGCGAC 80903 29 100.0 32 ............................. AAGACGATGGCCAGGTCTGGGGCCGCGTCGCC 80842 29 100.0 32 ............................. CCGACGGTGCTGGCGCGGAAGTCCAGTTCCCG 80781 29 100.0 32 ............................. GCGCCCAGGACAGTCTCCACCGCCTCGGTGGC 80720 29 100.0 32 ............................. CTCGCCATCGCCAGAGAGGAAGCGACGATGTA 80659 29 96.6 32 ..................A.......... ATCTCGTGCGAGTACACGCTGAAGGTCCGGAA 80598 29 100.0 32 ............................. ACGGCGGCGCCGACCCAGTGGATCGTGTGGCC 80537 29 100.0 32 ............................. CATCCCGATTGGGCGCGGAGCCTACGCGATCA 80476 29 96.6 32 .................A........... GCGAGGAACTTCTTCGCGTTCAGGTCCGAAGC 80415 29 100.0 31 ............................. ATGATGATCCCCGGCCTGCAGGTGGTCGGCG 80355 29 86.2 31 ...........ATG...A........... AACGTGAGCGGCACGATCCGGGTGCGCCGCT T [80350] 80294 29 89.7 32 ...........ATG............... TCTCAGCCCTCCCCTGTGCGGGAGGGGGAGGA T [80289] 80232 29 89.7 0 .......................A..T.A | ========== ====== ====== ====== ============================= ================================ ================== 17 29 97.6 32 CCCTTCCCCGCGCACGCGGGGGTGAACCG # Left flank : TCGTACCGCTCATCGAGGATGTGCTCACCATTGATGGTGTCCAGCCGCCATCGGCTCCGCCCGAGGCACTGCCAGTCGCGATCGAGCAGAAGGAACAGAGCGGCGATGCTGGTCATCGTTCTTGAGGCGGCCCCACCACGGCTGAGAGGTCGTCTAGCCCTTTGGTTGCTGGAGGTTCGCGCCGGTGTCTACGTCGGGCGGGCGTCGCCACGGCTGCGTGACCGGCTTTGGGATGAAATCGTGGCAAACATTGAGGACGGGAACGCGGTTCTCGTCGAGGCAAACTCCAGCCTGGAAGCGGGGTTTACGTTTCGCACGGCCGGGCGCGCCCGCAGGATGCCGTTGGACAGCGATGGCTACCCGCTGGTCGCCTTCCATCCTGAAGGGGAATGAGGAAGGTTGGTTCCTGGACATTGTGAACAACGCTCGTGATGCGGGAGGAAGTTGGTGGACTTCCCGCAATGCGAATTCCTGTGTTTTAGCAACGGCTTCCAGCCATA # Right flank : ATCGCTTGGCGCAGGTCAAGGTTGCGATCACACCCTTCCTCTACTTTGCGGATGATTGTTTTGTAGGCAACCCTTCGTCCATCAGGACGTGTAAGGCTTTTCGGGACAGTCTTGGGACAATTGCTGCTTTGGAAAGCCCGCCCCAGACATGGCGAAGGCCGACAACCCATTGGGGTTTCGGCCTTCGTGGATGGTGGGCGCAACCTGCGGCCCCTACGATGTCAACGTAACCGTTCCTTCTGCTCGTGCAGCCAGCCGCTGTCGACCAACTCCACGTAGGCAAGCGGCGCCGTCAGGCGGAACTCGTCGCGCTCCTCCTCGGCCAGCCCGGCGGCGAACGCCAGCAGACCTCCTTCAAGATCGGCCACAACCGTCGTCACGCGTCGGCTGCCGGGTGATGTCGAGGCCGAACAGGCCGTCGTGCAGGTGCGTCAACTGTGCTGTGGCACTGTGCCACCCATCCCGCCACCGAGGACACGATGCCGAACACCGCTCCCGCC # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTTCCCCGCGCACGCGGGGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTCGCGGGGATGAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 90411-91110 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGINQ010000019.1 Azospirillum soli strain CC-LY788 Ga0451091_19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 90411 29 100.0 32 ............................. GGGGCGAAGAGCATCGCTCGCCCTCACTTCAC 90472 29 100.0 32 ............................. CGGTCGGCGCGCTCGGCCGAAATCAGCCCGAA 90533 29 100.0 32 ............................. ACACCGCCGGTGCCCCCGGCGTTGCTGCTCCA 90594 29 100.0 32 ............................. ACCTCGCGGCGCTGGGCTCCTGGGACGGCGAC 90655 29 100.0 32 ............................. TCGCCGGCGATGTCCTTCGTCGCCACGCCCAG 90716 29 100.0 32 ............................. AAGTCCTCGCCCTTCTCCCACGGGGCCTCGCC 90777 29 100.0 32 ............................. GTCTGCCCCAGTTCCAGGGCGCGGCGGTAAAC 90838 29 100.0 32 ............................. TGCTGGGCGATTCGGGCCACCGTGTTTCTGAC 90899 29 96.6 32 ..............T.............. GTGACGCCACCGACGATCAGCGCTCCTGGATG 90960 29 100.0 32 ............................. CTCTCCGCCGCCCCGTCCCACGCTGCGGAGCA 91021 29 100.0 32 ............................. TATTCCGGGGTCGGTTCATAGCCGATTTCCGC 91082 29 93.1 0 T.............T.............. | ========== ====== ====== ====== ============================= ================================ ================== 12 29 99.1 32 CCTTTCCCCGCATGCGCGGGGGTGAACCG # Left flank : CGTACGTCCTCGACCCGGCGAAGGGGTATGAGCGCGCCGTCGCCTGGGGCGATGACGAGCGCGTCCCGACCCGGCTCGGCGTGTCGCTGGAGGTTGTCCTGGTGAAGGACGACGGGGTAGTAGGGGGCGTCCGCCCATTCGACGGTGCGGACTGGTCGTCGGGGTGCCTGCGCCTGTCGTCCAGACGGGTCCGTGGCACCGTTCCGCATGATCTCGCGGCTGACGTGGTGGAGGAAGTTGAGGCGCGGACGGGTCTCGCTGAGATCGTACGCATTGTTTTCTCGGCTGTCACAGGCAAGTGGGGGGGGACGCTTCTGGGCAGTGAGAAAACAATCTCCTTCACCGTTGACGATTTCTACGGTTTGGAGTGGGTGTAGGCGTCGGAAGGCGGCTTGACCTGGGATCTTGGACATCGTGCAGACGGACATCCATTGCGGGAAGAAGTTGGTAGACTTCCCGCACACCGATTTTGCATGCTGGAGCAATGCCTTCCAGGCATA # Right flank : GGCTCCAAGGGACAGGACAGCCTTTTCGCCGTGCCGCCTGCAACGGCGCGGAGCCGGTCGGTGGGTGCTACAGCAATACAAGCGACAATGCGGGGCAGGGGAGGGGCTGCTGCGCCGCGTCTACCGCCGACTGTACTGGTGCGGGTCAGGCTGGCACGATATGCTGGTCTCCCCTTCCAGAGAGCGAGCATGGTCTTCGACCTTTCGTCCGTCGCCGGAATTTACTTCCCCGTGGCCTGCAGCCTGCCTGACGGGCGGATGCTGTTGCTGCCGCGTTTTGCGGACGAGGTGGAAGACACATTTCTCGCGGCCTATCCTCCGGACACGTCTCTCGATGCCGATGCGTTTGCCCGTCTGTTTCTGCGCGTTCTCGCGCGCATTCCGGCCGAGGGCGCGGATCTTGCACAGGAGAGGATCAAAGACGACGCCTACCAGAATGGCGAGCCGCTGACGGAAGACGAGGTGAATGCCTGGCCGCTGGCGTGGGTTGAGGACGTCGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTTTCCCCGCATGCGCGGGGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCATGCGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 7604-6506 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGINQ010000030.1 Azospirillum soli strain CC-LY788 Ga0451091_30, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 7603 32 100.0 34 ................................ ATGGTCTCGCCGGGAAGCACCGGGGCCAGCAGGA 7537 32 100.0 35 ................................ AGCATCCCGTTCTGGCAAGCCGGCGCAACTTGGTA 7470 32 100.0 34 ................................ TAGACCTCGACCGTCAGGCCCGGCCTGGTGTCGT 7404 32 100.0 35 ................................ AGCGCCTCCAAGGCGGACCAGTCGTCGGACACGAA 7337 32 100.0 33 ................................ AGGCGCTTGCCCGTGACGGCGTGTCGCTGGATG 7272 32 100.0 35 ................................ TGCAACTTCGCCCTGACCGAGACGGACGCGGGCAT 7205 32 100.0 34 ................................ ATGGGGCTGGCGGAACATGTGGCCGGCTGGTCGA 7139 32 100.0 34 ................................ CGACGCCCACACCCCGTTTGGGCTGAGCGGACCG 7073 32 100.0 33 ................................ ATGCCGCTCGGCGGGCCTGCTATCGGTGGCGGC 7008 32 100.0 35 ................................ AAGCGCGACCTGCAGACCACGCTGGTCGAAGAGAT 6941 32 100.0 34 ................................ CACCCACACGCAAGCGTGTGGGCCCCTGCGAAGG 6875 32 100.0 35 ................................ TTGAGGCGGTCGTTCTCCCGGTCGAACTCGCACGC 6808 32 100.0 34 ................................ ACGTCCGACCGGCGCAACAGCGCGAGGTCGGGGT 6742 32 100.0 37 ................................ CGGAGCGGCCGGGGCGGGGTCACGGCGCGGCACGCGA 6673 32 100.0 35 ................................ ACGACCCGAACGCCTGGTACATGGCCTGCGACCCC 6606 32 100.0 37 ................................ TCGGCGGCGCGGGCGGCATAGGCCGCGACTGCCTCGC 6537 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 17 32 100.0 35 GTCGCCTTCCGTGCGGAGGCGTGGATTGAAAC # Left flank : GGTAGCGCTCCACCGCATAGACCGCGCCAGCGGAGGAATGATCCACCCGCCCCTTCCGCTTTTCGTCCGCCGTCTCCAGATAATCCTGAAAGGCCGGAGCATACTTCCCGGCGTCGTGCAGCAGCCCCAACGCCCGGGCGAACACCGCCGCGCCGGCCTCCGGCAAAACGGCTCCGAAACTCTCGGCCTGATGGGCGACAAGTTCCAGATGGGACCGCAACGGCTCCCACTCCGCCTTCGGCCGGGCGGGTAGCGTATGAGCGTACCAGTGCATGGTAACCTCGCGCGATGGTGGCACTCCACCCTACCAGCCCCGCACCGCCGCGCGAACCCCAAGCTCCCACGCCACCCCCGGCACGTTCGCGCGGCGCATCAGCGCAGGCGTGCCAACGTCTTGGAGCCGCTATGATCGAATTGAACGCTTCCCGCTCCCTCCCGCAAATCCGGTTCGCGCAAACACTGCCGTTTTCCACGAGCTGACAAAGGCTTACACTTCGGAG # Right flank : ATGATGCCACGGCGGACACGCCGGCTCACATGTGCTGGTGCTCGCTTTCCAACACCTGCTCAACCGAGCTATTCTGAGGCTTTCAACCTTATTATGCGCCTGTGCCAGCTTGGCATTCAGCCAAGCTCCAACCGCGTAACACGAATAGACGCTATTTCTTCTTTTGAGGGAAAGTCGGTCTGCAGAACACATTGTTTCGCCGCGATTTTCTGCTATTTTTCTAACTGGAAAAGCTCATAGACGGAGTAATTATTTCTTCTTAATGGCCGGGTGACGGCGCATGTTGATCTTCGGCCATCAATGCGAATGTCTTTTCCGGGGAGCAATCTGCGTTCAGCCCGATCCGGGCCATGAGCAAACATTTTTGTTGATGCGCAGACTTTTTTGTCAATGTGAAAACATTTTTGAACGAACACAAAAATGTCGGCGGACAAAAATATCTGCACATGGACTGCCGCTAAAGCATTGATTCGGCGTGCGTGGTTAATGAGCTAGATTTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCTTCCGTGCGGAGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCCTCCCGCGCGGAGGCGTGGATAGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.90,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [38.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 16265-18940 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGINQ010000030.1 Azospirillum soli strain CC-LY788 Ga0451091_30, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 16265 32 100.0 34 ................................ TCGCTGGCCGAGCGCGGCAACCTGTCCGAGGAAG 16331 32 100.0 34 ................................ CGCCGATGGTGGCGGCGTCCCAGGCTTCGCCCTC 16397 32 100.0 36 ................................ TCCAGGTTGCGCTGGCCGAGTACCCGGCCACGGGCT 16465 32 100.0 35 ................................ AGTTCCTCAACCGGCCGGTGCCATGGACAGGTATC 16532 32 100.0 34 ................................ AGGCCGTACCGGTCGATCGAGTCCGCCAGGGACT 16598 32 100.0 35 ................................ TTGCGGATCCGGTCGAGGTCGAGTTCGAGCACGCG 16665 32 100.0 34 ................................ CTCACGGATCGCCAGTCTCTCGAATCTGGCGAAA 16731 32 100.0 35 ................................ GTCTCTCTGGCGACGCGCGCCTAAGCGCGTCCCTC 16798 32 100.0 35 ................................ CGTGGCTGTTCGCGGTGGCCGATTGGCGCTACCGC 16865 32 100.0 35 ................................ ATGGCGAAGCCCCGGCCCAGGTGGTGTCACCTGTG 16932 32 100.0 35 ................................ GACACCAACCTGAAGCAGCGGGCGCGGTATCGGTT 16999 32 100.0 34 ................................ ACGCCCCTATGGCCCGCGACGGACTGGTCACCGT 17065 32 100.0 34 ................................ CTTGCAGGTCGGCATGTCGGCCGGCATCGGCAGA 17131 32 100.0 33 ................................ GTCGTGACCCCAGCGCAGCCGCAGAGGGTTTGG 17196 32 100.0 35 ................................ CGGCCATGATGCGCGCCAGACTGCGCCGGGCGGCC 17263 32 100.0 33 ................................ AAGTTCGCCCCGCCGGATAGCACGTTGCGCCCG 17328 32 100.0 34 ................................ ATCTCGCGGCGCGCTTGCGCCTCAAGAGCCTCTT 17394 32 100.0 33 ................................ GTCGCCTTGTGGGAATGCGCCCATTCTGAATAT 17459 32 100.0 34 ................................ GTAGTCGAGGCGGGTAGTACCGGCCTGCGGCTTT 17525 32 100.0 35 ................................ CCGCACGCCGCCATGGTCAACCGGATGAGCGGCCC 17592 32 100.0 34 ................................ CCGGCCCTGGTCGCCGCGGTGCAGGCGCCCGACG 17658 32 96.9 33 ....T........................... GCCTCGACGGCGAGGTGTAGGGTGACCGTGGTC 17723 32 100.0 33 ................................ CGCAAGCCGCCTAACCACCACTCCCTCCCTAGT 17788 32 100.0 34 ................................ CGATGGCCGCTGTCACGCGGCGCCGGTTGATCTT 17854 32 100.0 33 ................................ ATGTCGTTCAGCATCACGCCGGCAACGTCGCGC 17919 32 100.0 35 ................................ CGGTCGGTCGGCTCCGACGCCCCGGTGGTCTACCT 17986 32 100.0 34 ................................ AGGTAGGCCCAGCGCGGCGACCGCAGCACCGTCT 18052 32 100.0 35 ................................ CGACCGTCGAGGAAGGCTTTCACCTCTCATGGCTT 18119 32 100.0 35 ................................ CTCGATACGGAGACGGGGCGCGGCCGGCTGTACTC 18186 32 100.0 34 ................................ CGGCGCTCCGGCCAACCCCGCCGCCTGACCACCG 18252 32 100.0 34 ................................ CCGCGCCCCATATATCGCGAACTGAACGCCCCGT 18318 32 100.0 33 ................................ CAGGCCGCCGTCGAGATCGCGACACGCCCGGTC 18383 32 100.0 35 ................................ CAGGTGAAGCCCATCTCCGAATGGCCCCAAGCGGG 18450 32 100.0 33 ................................ ACCTCGCCCTGGACGCGGTCGCGCCGCATCCTG 18515 32 100.0 35 ................................ AACCCCCGTCCGCTTGAACGCGCGGTCGCCGGACC 18582 32 100.0 32 ................................ CAGGAAGCGGTGATTGCGCTCGGCAGTGTTGC 18646 32 100.0 32 ................................ CAGGAAGCGGTGATTGCGCTCGGCAGTGTTGC 18710 32 96.9 33 ...........A.................... CTGTCGTGGCTGATCTCCGGCGGGGAGAGCGGG 18775 32 100.0 35 ................................ ACGCCGCCCCCCGAGCTCGCCGCCATCGAGCGCGC 18842 32 100.0 35 ................................ GCCGCGGAGATCGACAAGTCGCTCGGCCTGTCACA 18909 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 41 32 99.8 34 GTCGCCCTCCGTGCGAGGGCGTGGATTGAAAC # Left flank : GCGCGCATGCTGGTGTTGGTCTGCTACGACGTGTCCACCGAAACCACCGCCGGCCGGCGGCGCTTGCGCCGGGTGGCAAGGGCATGCCAGGACCATGGTGTGCGCGTGCAGTTCTCGGTATTCGAGTGCACGGTGGATCCGGCACAATGGACCACGCTGCGGGCGCGACTGCTGGATCTGGTCGACCCAAAAACAGACAGTCTACGCTTCTACCTGTTGGGCTCGGCGGCGCGACGCAAGGTGGAGCATATCGGCAACCGGCCGCCGACCGATCTGGACGAACCCCTGATACTCTGATCCGGCGCTGGTCGCCAAAACCGCCGCGCGAACCCCAAGCGGCCATGCATTTGCCGGTGGATTCGCGCGGGTGGGTCGAGCCATGCATTCCAAGGGATGTAGTGGAATATAGGAAAGCGGCTCTGTTGCAAGATTGGCCATTTCCAGAGGTTCGCGCAAACGCTGTTATTTTCGCTGATTTGCGAAGTCGCTATGCTCAGGCG # Right flank : CAGCGCCTGCGTGGCGGCCGGATGCCCAAGCCCCGGCTACAGGTCAAGGTGGGGAATCCGTGCGCCTTCTTGCCCGTCGGCGGTCGCGGCGATCTGGTCGCGCAAGTCGGCAACCAGCCGATGGAGGTGTTCCGGGGAGGTGTCGGGGCGAAGCGCCGCCGCTTCCAGGCGCGCGGCCGTTTGGGACAGTGCGGTGTATCCATAGGTTGCCGCCGAACCATTCAGCCGATGCGCAATGCGGCCCATGGATTCGCGGTCGCCCGTTGCCAGCGCGGCGGCGAGTGCTGCATCGAGATCGCGCAGGGTAACGAGGAACATGCGCTCTAGACGTCCGGAGATCGCGAAGGATCCCGCCAGTTCCTGCGTGGGCGGGGGAGCGTTGACGCAGGAAGGAGCATTGCGGGCCAGCGCATCCAGCAGAGCGCTGGGGATCAGCGGCTTGGTCAGCACCTCGTCGATGCCCGCGGCGACATAGGCGTGCAGGTCGTCCGGGCTGGCGT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCTCCGTGCGAGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : NA // Array 1 29281-31089 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGINQ010000001.1 Azospirillum soli strain CC-LY788 Ga0451091_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ============================================================================================================================= ================== 29281 24 100.0 52 ........................ CTGGAGGGGCGTCAGCACCTCGCCCTCCGGTGTCCCGACCGTCTTCCCCGGT 29357 24 100.0 53 ........................ ATGAAGCGCAGCTGCACCAGAGCGTCGCGCGGCGTCACGCAGTCTTCCCCGGT 29434 24 100.0 50 ........................ GCGTAGGCGTAGCGACCGACCAGCTGCATCATGTCGGGTCTTCCCGAGCC 29508 24 87.5 51 .....A.TC............... GCGATCACCGTTGGCATCACGCGGCGGATGACCGGCAGTTCCTCCCGGGCA 29583 24 87.5 51 A......TC............... GTCGCGGCGTTCAGCAGGTCGGGGTCGGACAGCTTGACGTCTTCCCGAGCC 29658 24 87.5 48 .......TC......T........ CCGACCTGGACGAACAGGAGGGTGTAGGCGTCGTCGCCTTCCCGAGTG 29730 24 87.5 54 ....C..TC............... GTGGTGCTGCCCGACATCATGTCGGTCCTGATCTGGTCGGGGTCTTCCCGAGTG 29808 24 83.3 48 ....CA.TC............... GCAGATTTGCAGGAGGTTCAGCGGCATGGTCAGGCGTCTTCCCGAGCC 29880 24 91.7 51 .......TC............... CAGTTGCCGGAAGAGTGGCGACGCGAGCGGCGTGAACGGTCTTCCTGAGCC 29955 24 91.7 52 .......TC............... AACGTCATCTCCGGAGGGACGAGGCGAACGTCGTTCGCGGTCTTCCCGAGCC 30031 24 87.5 51 .......TC..............T GCGGATCTGATCGCGCTCGATCCGAACCACTGGCGCCCCGTCTTCCCCGGT 30106 24 100.0 48 ........................ TCCGGCCGCCCCATCGCGGCCTCTATGATGGCCTCGGTCTTCCCCGGT 30178 24 100.0 48 ........................ GTGAAGGCGTTGGTGTCGGCGTTGCTCTCGTAGGCCGTCATCCCCGGT 30250 24 87.5 48 .....A.TA............... GTAGTCGGTCGTCATGCTGCGGCCCTCACGTCGGTGTCTTCCCAAGTG 30322 24 75.0 53 ....C..TC....T.T......A. TCGCGGTGCTGGATGGGAAGCACAAGAATGTAGTAACCTTGTCTTCTCCAGCC 30399 24 75.0 48 ....CA..A....T.T......A. ACCTTCTCGATCTCGGTCGAGATGTCGATGGTCGATTCTTCCCGGGCA 30471 24 91.7 50 ....C...C............... TCCCGTAGGTTGTTGTTAATCGTGAACTTGATGGCTTGTCTTCCCGAGCC 30545 24 87.5 49 .......TC......T........ AGCACATTCAGGGCATGACTGCTCAGCTTCCGCTTCCGCCTTCCCCGGT 30618 24 100.0 51 ........................ GTCTTCCACATGCTGGCGGCCATGGCGGAGTTTGAGCGCGTCTTCCCCGGT 30693 24 91.7 48 ....C..T................ ACGATCAGCGGGTAGCGCGGCTGAAGCTCCAGATCAGATCTTCCCCGG 30765 24 91.7 125 TG...................... GTCAGCGCGTCCACCTGGGCGGAGAGGGCGTATTGGGTCCTCCCGAGCGGAAGCGCTCGGGCTTTATTGAAACTTGATGGCGATGCGGATCGACTCCTTCTGGGCGATCTCAGTCTTCCCGGGCG 30914 24 83.3 50 ....C..TC......A........ GCAAACTGGCGGGCGATCAGGGACTCCGCTTCGCCGTCGTCTTCCCCGGC 30988 24 95.8 54 .......................T CCGAAATGGGTGAAATCGTGCTCGAACATGCTGAGCAGACCGTCTTCCCGAGCC 31066 24 91.7 0 .......TC............... | ========== ====== ====== ====== ======================== ============================================================================================================================= ================== 24 24 90.6 54 GAAATGCCGGGGCCTCATTGAAGC # Left flank : GCCCCGGCGGGCCGCACCGGCCACGGCGCCCTGCTGCGCCCGCCGGCCCGGCGACGGCCCGCGTCCCGGCCCGCCCGATCCGGAACAGCGCCGGGCGGCCGGCCATTCACCCGGCGGCGCGCCCCGCCCCACCCGCGGAGGACCCGTCGCGGCGCGCGTCCGCAAGGCTCGCGGACGGCCCTGGTCCGGGGGATACGGACACCGCGCCCCCCAGAGGACCTCATCCGGAATCCGCCCCGCGCAATCCCGTGATGACCACCCGCGCGCCCGGTGCTATCCTCTCCCCCGCCGCCGCTGCCGCGCGAGCGGTCCGGTACCCGCCAAAACCCCGGACCCGCTCGCACAGCGAAGGCCGTTGATTTTCCAGGGTTCTTGGACAGCGTGAAGAACGAAACCGGATCGGCCAAGCGCCACACCCGATCCGAATCACGGACCGCTCGAATCCGTGGCCGTTTGTCGTTGTCGTTCAACGGGGTGCAACCCACCCTGTCTTCCCCGGT # Right flank : CATCGCGAGCCAGATCGCACGGTTGATAAGATCGTGAGGTCTTTCCGAGCCGAAACGCTTGGGCTTTGGCCGGCACACACCTTGCGATACGTCATCCCCGCGAAGGCGGGGAACCAAAAAACTCCGCACGGTAGCACTGGTATGCCCTGGATTTCCGCCTTCGCGGGAATGACGGTGGACGGTGGTTTTCGAAGGAGAAACCGCTTTATCGGCCAATGCGACAGCCCCGGTGAGATGCCGGGGCCTCACCATACGACCCGCCCGGCCCCTCGCCTTGGGCGAAGAGCCGGGCGGTCTTTGTCGGTCAGGCGCGCGCGGCGACGCGTTCGGCGTCCTTGATGAGGCCCCAGGCGAGGTGTGCCTTTTCGGAGGCCTCCGGGGTGGGGCCGGTGAACAGGACGCCGGGTTCGGTGGCTTCCCAACTCCACAGCATCCACAGGCGCACGGTCAGGCCGGCGAGCGTGGTCGCGGGGATCGCCGCGATCTGGTTTTCCAGTTTC # Questionable array : NO Score: 4.54 # Score Detail : 1:0, 2:3, 3:0, 4:0.53, 5:0, 6:0.25, 7:-0.58, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAATGCCGGGGCCTCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [16-22] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 39780-41221 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGINQ010000001.1 Azospirillum soli strain CC-LY788 Ga0451091_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ===================================================== ================== 39780 24 87.5 52 ....T..CG............... AGCTTGCCGAGGTCGTTGAACAGCAGCGCCCAGCACTAGGTCTTCCCGAGTG 39856 24 100.0 53 ........................ GTGACGAACGGGATCTCACGGCTGTTCAGGTAGGCGCGGCATCTTCCCGAGTG 39933 24 91.7 51 .............T.T........ GCCACGCGAATATTTCCGTTTGTGCGCTGATGACTTGCAGTTTCCCGGGCG 40008 24 83.3 49 .......C.....T.T......A. CACTTGGCCTTCAGCCAGGCGACGAACTTGTTCCAGGTCTTCCCGGACG 40081 24 75.0 49 ...GT..C.....T.T......A. GTGCAGCCGATCCAGAGTTTGAACGTGTGGTCGGTTGTCTTCCCGGGCT 40154 24 95.8 51 .......................T TGAGCAGATTGATCGATACTACTGGTTTTCTCCGAAGTGTCTTCCCGAGTG 40229 24 95.8 49 ......................A. TAGGCTTTTGGGTACTGCACCTGCTCGGCAACGATGGTCTTCCCGAGCC 40302 24 95.8 52 .............T.......... ACTTCGTGCTGTGACTTGCCACAGAACGAGCAGTACAGCGTCTTCCCGAGCC 40378 24 91.7 50 ..G.T................... GCCTCGCGGGTGAAGGCTGCCCGCCCCGCCGAGTCCAGATCTTCCCCGGT 40452 24 87.5 53 ....T..CG............... GTGGTAAGGAACAGCACGCCTTGGTGGTACTCGAGCAGACGTCTTCCCGAGTG 40529 24 100.0 50 ........................ AAAGGTTGGCAAGGGCAGGAGGCGGTCCAGACGGGGCGTCTTCCCGAGCC 40603 24 95.8 52 ....T................... TGAACGAACGTGTCTTCCGGGAATTCTTGGTCGATGAAAGTCTTCCCGAGTG 40679 24 100.0 51 ........................ ATGTTCATCATTCGGCGGGATCGTTTCCAGAGGGCTCGCGTCTTCCCCGGT 40754 24 87.5 49 ....T...G......T........ ATCTGGGCGAAGCCCATGTAGACGTCGATGAACTTGGTTTTCCTGGGCA 40827 24 95.8 50 ....T................... AGGCTCATCAGGTAGGCGTGAACGCTTTCGCGGACGGCGTCTTCCCCGGT 40901 24 87.5 51 ....T..CG............... TTGTCAGCCATGGCGCGCGCCCTCCTGCTGGGTGGTGGGCATCTTCCCCGG 40976 24 79.2 49 TG..T..CG............... TACTGGCGCAGGCCCTCGTCCAACTTGGCCTTCGGCGTCTTCCCGAGCG 41049 24 95.8 50 ........T............... AGGAAGTCCATGACCTGCATGTCACCGAACAGTTCGCCGTCTTCCCCGGT T [41056] 41124 24 91.7 50 ....T...G............... ACTTGCTGCGGGTTTTCGTTGTGCTGCTTGAACTTAAAGCCTTCCCCGGT 41198 24 91.7 0 .......CG............... | ========== ====== ====== ====== ======================== ===================================================== ================== 20 24 91.5 51 GAAACGCTCGGGCCTCATTGAAGC # Left flank : CTCCATCGTCATTCCCGCGAAGGCGGGAATCCAGGCCATACAAGCACTTGTGTGGGGAGTTTCTGGATCCCCACCCAAGCACCTGTTCGCCCTGAAGTCCCGCCCCTCACACCGGAAAGACCAGCACTGACGGCATCAAGCGGACCGAATCCACCGGGAGCCGTCACGGGAACGCCAACGGACGGTTCTTTCCACACGGCACCCGCGCCAACCGCCCGATGCGAAGGCCCCGCCCCCGACGCAATCCCGTGATGACCACCCGCGCGCCCAATGCTATCCTCTCCCCCGCCGCCGCTGCCGCGCGAGCGGTCCGGTGCCCGCCAAAACCCCGGACCCGCTCGCACAGCGAAGGCCGTTGATTTTCCAGGGTTCTTGGACAGCGTGAAGAACGAAACCGGATCGGCCAGGCGCCACACCCGATCCGAATCACGGACCGCTCGAATCCGTGGCCGTTTGTCGTTGTCGTTCAACGGGGTGCAACTCACCCTGTCTTCCCCGGC # Right flank : CGCCGTACGCGACGGTGAACTTCTTCGCGAGGATTGGGTCTTCCCCGGCGAAATGCCGGGGCCTCACCATACGACCCGCCCGGCCCCTCGCCTCGGGCGAAGAGCCGGGCGGTCCTCCGTTCGTCAGGTTCGCGCGGCGACGCGCTCTGCGTCCTGGATGAGGCCCCAGGCGAGGTGTTCCTTTTCGGAGGCCTCCGGGGTGGGGCCGGTGAACAGGACGCCGGGTTCGGTGGCTTCCCAGTTCCACAGCACCCACAGGCGCACGGTCAGGCCGGCGAGCGTGGTCGCGGGGATCGCCGCGATCTGGTTTTCCAGTTTCATCAGCCGCCCCATGAAACGGTCGTTCGCCCGGGTGTCCTCGCCAAAGTCGCGCGCCTCGTACCGGCGCAGCAGGTTCAGGTGCCGCTTGCCGAGGCGCAGAAGTTCCGCGTCCCCTTCTTCGGGCACAGCTGTGGTAATCTCGGAATCAGCCATGATCCGTAGCTCCCATAAGCTCGGGT # Questionable array : NO Score: 4.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.57, 5:0, 6:0.25, 7:-0.27, 8:1, 9:0.22, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAACGCTCGGGCCTCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [17-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //