Array 1 1176676-1176195 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYDK01000001.1 Listeria monocytogenes strain N13-2179 NODE_1_length_1453311_cov_55.6413, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 1176675 29 100.0 35 ............................. GCGATTTTTGTCAAAGGGACAGCGATGGGTTACAA 1176611 29 100.0 34 ............................. TTTTCTACTCCTGCTTCTAAAATGTCGTTTATAA 1176548 29 100.0 35 ............................. CTAAAACATCCTTCACTGTATCAACTCCTTTCTAT 1176484 29 96.6 36 A............................ AAAATAGGAGGAAATAAATTATGACTATCAAATTAA 1176419 29 100.0 35 ............................. TTTGTTGAATCAACGGATATAGATTTTACAATTTC 1176355 29 100.0 37 ............................. TTGGTTCCTTTGGAAAACAACAATAGCGTGTAGTATT 1176289 29 75.9 36 ......T.C.A.C...CA...T....... GCAGAAGCAGCAAAATAACCAAAAGTAATGACTTTC G [1176265] 1176223 29 79.3 0 ......A..T....AGA......A..... | ========== ====== ====== ====== ============================= ===================================== ================== 8 29 94.0 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : GCGTCCGTGCCACTACTTCAGCTGATATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCCGGAAACGCAACCGAACGTTTACAAAATTCAAGTATCAAAGAAGTTATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATTTCTATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTCGAGTAGCGTGAAAAATACCGGGGATCGACAGAAAGTTGTAAGTGGTTGGGGTGGAAGAAGTTTGGCGGTATTTGCTTGGGGAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTTGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGTGG # Right flank : GAAAACCTGTTATACATAGGATTATCTATTTCCGTTATAATTATTCCTTGCAAATAAATTCCAAAAAACAAACCCCTCATTAATTGGGTTTGTTTTTTTGTGAATAATTATAGTCAAACGAGCAATCTGTTAACAATTTAGCAATAAACGCAATAAAAAGCCGTTTTTTCACTATGGATTGTACTATAAAACATAATCTACCTATGCTAAAATTTAAGGGAAGGTAAGCTGAATAATACATATAAGGAGGACTCTACTATTGAAAAAGATTCTAGTGCCCATATTATTGTTAGCAACAATCTTAGCAAGCTGTTCCTCGCCGAATGAAAAAATAACCAAAGACACTAAAATATCCAAGACTAATACAATAAGAGCAGATTACAAAGTTCCAAAAGATATTAAAGAACTTGAGGATGATAGTGCTAATATTGTTAAAGTAAAATTTCTTCAAAATAAAACGATAGGCAAGGATGGTAGTACTATCAGCGAGATAGAAATTT # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 6914-5358 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYDK01000003.1 Listeria monocytogenes strain N13-2179 NODE_3_length_508853_cov_60.9497, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 6913 36 100.0 30 .................................... AAATTATATGATAAATCGTGTTGTATTAGT 6847 36 100.0 30 .................................... GTGAGTTTGAGCCTCGCAGAGCGCCCACCT 6781 36 100.0 30 .................................... CTTGGGTCTGTCTGACAACGGAAGTGCTTT 6715 36 100.0 30 .................................... CTTCGAGTTCGTAGCGTTGACCATTGACCA 6649 36 100.0 30 .................................... GAACTTGATATTGCGGGTCAAAATAAGCGA 6583 36 100.0 30 .................................... AACTAAATCAATCATTGTCCCGGCTTGGTG 6517 36 100.0 30 .................................... TTGCAAAGAAGTCTAATGCGTTATTATTAT 6451 36 100.0 30 .................................... ACAACAAGCGGAGTTTGCCAAAGCAGTCGA 6385 36 100.0 30 .................................... AACATAGTGACAACAAGACCTTGATTTCTC 6319 36 100.0 30 .................................... CTATTATATTCAATGGACCGAAATGCCGTT 6253 36 100.0 30 .................................... GCCATCCCTGTCTATTAGTTGCCGGCAGGT 6187 36 100.0 30 .................................... GCTGTTTTAGCTGTTTTAGGTCGATGAAGA 6121 36 100.0 30 .................................... AATGCTGTAGTATCGTTCGGATGGTGTGTC 6055 36 100.0 30 .................................... CGGAAATGGTTCCAGTTCAAAATCTTCCGG 5989 36 100.0 30 .................................... CATCGGAAAACGGGTTGTCATCATCGAAGA 5923 36 100.0 30 .................................... TGACAGCAATAATAAAGTCATGATACTTTT 5857 36 100.0 30 .................................... CTGAAATTTCGTCTGTTTTAAAAAGTAAGA 5791 36 97.2 30 ...................C................ TATCATCTATTTTAAGCGGGTTTGTATTAT 5725 36 100.0 30 .................................... AAATTGGCTAATAGTGAAATGTCTTTAATG 5659 36 100.0 30 .................................... GATTGTTCTCTCATTTTCCGAATGTCGATA 5593 36 100.0 30 .................................... TGTCTCTCAATTGGTTCATGATAATTGCTT 5527 36 100.0 30 .................................... ATGAGGAACGAGAAGCATGTTTCCGGGAGT 5461 36 100.0 30 .................................... TGTCTGAATGTAGTTGATATCTTTAACTTG 5395 36 77.8 0 ............CA.....C.....A.A....T.GA | A,T [5362,5367] ========== ====== ====== ====== ==================================== ============================== ================== 24 36 99.0 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : TGACAAATTAACCGCAACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACAGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACCGAGGAAGAATTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTTGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : GACAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAAACTATCTACATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAAGGGTGGAGAAAAGTTTCCTCATCTCTATATATACTAGAGTGGCTTAGACTTCTTAAATTCGAATTTTGAAATGAATGTTGACCAAGAAAAAGATATAAATAAATTGTTTCCCTATTCAATTCGTTTCAACTCAACTTGCAAATTTCAAGTCGCTACAAGCAAAGGGGATATACCGTTGAAAGTGGAGGAGCAAAATAATTGTTACGAGACCAAAAGTTTAAAAATCTTATATGATTATATTCTAAATGCGAGTAAAAATAGTGACACGCTTGAACTATATACTGTTTGGACAGCGAGAAAGATTTACCGTTAACGCACAAACCAGAACTGCTTTAACTATCGGAAATCTAGTTTTAAGTGACAGAGAGCTATTAATAATTAAAAGTGAGACACTA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //