Array 1 347566-352283 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHUWJ010000007.1 Chitinophaga sp. sic0106 NODE_7_length_391747_cov_39.667297, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 347566 30 100.0 38 .............................. AAAAATTCATCACCTACGATTTATCCAGCAAAAATATG 347634 30 100.0 37 .............................. AATATTCCGAAATGCGCTTCACCTAGTCACATTCGAA 347701 30 100.0 35 .............................. AAATCTCTACCGGGAGTAATATTTTATATTTTGCC 347766 30 100.0 35 .............................. AGGAATCATTAATACAGGTTCAATTAACTCAGGTA 347831 30 100.0 36 .............................. AATGGATAGAGTATAAGAAGGCTATCAAAAAGCCTT 347897 30 100.0 37 .............................. TATAATCACATCCCCGGTGTCATGTATGCTAATAATG 347964 30 100.0 34 .............................. TGGCGTAGAAACGCCGAGGCTACTAACTATATGC 348028 30 100.0 36 .............................. CTTATTTCTACACTGTCATATGATCTGTTTATTTGA 348094 30 100.0 34 .............................. AATGGTAAGTATACATTTATACATACAGCAAATG 348158 30 100.0 37 .............................. TTCTAAAATGAACGAGCTACAGAGAGGCCTTGATTTT 348225 30 100.0 34 .............................. AATACGAACCGTCAGGATCATCACGCCTCTATAC 348289 30 100.0 38 .............................. ATGTGCAGAATCTGTGGTTTTATTATTCATTAATTAAA 348357 30 100.0 37 .............................. GTTCTTCCAGTGATGGGAATGGTAATACAGGAGACGT 348424 30 100.0 34 .............................. GGTGATAAATTATTTGATTCACTTCAGCAAAGGG 348488 30 100.0 35 .............................. TAGGCCAGGCTATTGTATATTACTTGGAACAAAAA 348553 30 100.0 34 .............................. ATCTTTATGACACAAGGCTAATAATGCAATGTAA 348617 30 100.0 35 .............................. ATGTTAATGGGCCTACCTTACCATCTGGGTCTAAA 348682 30 100.0 36 .............................. ATAGTAAGACTCGCCGAATACCCATACACCAGAATT 348748 30 100.0 35 .............................. TATCTTGTTTTGTTTTGCATTCGGAAATTTGCACG 348813 30 100.0 35 .............................. ATGCTAAATATCCCTTATATCTCTCCTTTAAATCT 348878 30 100.0 37 .............................. ATCAAGCGGAATACACTATTTCATGTAATACAAATGC 348945 30 100.0 36 .............................. ATCAAAGATAAATTTTGGTTTTTTTGTAAGAAAACT 349011 30 100.0 39 .............................. TGTATTAGTCTTTAGCAGGCACAGCCCATTTTTTGGCAA 349080 30 100.0 36 .............................. AGGACGATTTGATTCATTTTGTGTTGGTAGATTCAT 349146 30 100.0 37 .............................. CCTTATCTAATACCTCAGAAGGAATAACATATTCTTC 349213 30 100.0 36 .............................. AACAATTGCATCAGTAAGGTATTCATCCAGTAACTT 349279 30 100.0 35 .............................. ACGATTTCAACGCCTGCAAGTCCAACCTGAAGGTT 349344 30 100.0 37 .............................. AGTACCCCTGATGCTATTTTAAGCGCTGAAGCCGTGG 349411 30 100.0 36 .............................. ATCATCGGACAGGAATTTATCTGCAATGGCAAGACG 349477 30 100.0 38 .............................. GTCATAATAGTGCCGCCAGCTGCTACCAGCTGCTGGGT 349545 30 100.0 36 .............................. AACGGAATCGTTTAAAGATACAGCCGCATTTGAACA 349611 30 100.0 36 .............................. AACTGTACAGCCTTTTTCTTCAGTGTAGAAAATGCG 349677 30 100.0 36 .............................. AGGTATTAATGATTCAGAAACGCATGATTTGCGTTC 349743 30 100.0 35 .............................. ATATATCCTCAAACGAGTAATTTGGCGTAAAAGTG 349808 30 100.0 35 .............................. TATTATCAGCCTCCTACCTGGTTAGCGGTGTTAGT 349873 30 100.0 36 .............................. AGCACTTTGAACGATTCTACTATGGCATTCAGTGCG 349939 30 100.0 35 .............................. CACGGTGGAAGTCACAACTTACACCAGGGCGAAAC 350004 30 100.0 34 .............................. AATGTAGATATTGTAAACCTTATAGCCACTCAAG 350068 30 100.0 37 .............................. ATTGAAAATGGTCTTATCCTTAAACAGAAGATCCATT 350135 30 100.0 37 .............................. TCCAAGTATGGGTCAATTATTTGACGTCTGTCAACCT 350202 30 100.0 37 .............................. AGTAATGTTACATCCATTTTAACCATATCCCTTTGCT 350269 30 100.0 35 .............................. TAGCATTCGACAATGGCGGCGAGCGCGGCATTGTG 350334 30 100.0 37 .............................. CAGTATTTTTCTACCCATTCCCGGCCTTCAGTAATAA 350401 30 100.0 37 .............................. TAAAGATGATTCATTATGACAATTGAAACGTGGAATA 350468 30 100.0 37 .............................. ATCATGATCGTAAGGGCATTTTACAGCGTTATTAAAA 350535 30 100.0 38 .............................. ATTAAGGCCCGTAATAAATTGTCAAAGGAAAACATAGC 350603 30 100.0 34 .............................. AATCATCTACTGCTCAAATGGATCTTCTGTTTAA 350667 30 100.0 39 .............................. AACATAATGATTGCTATGGAAATGTCTACCAGGATGCAA 350736 30 100.0 37 .............................. ATCTTACATCTGATCAGGCCACGGGGATATTGTCTAC 350803 30 100.0 37 .............................. ACATATTCTATAGATATTTCTTCATACGTGAAGTACT 350870 30 100.0 37 .............................. TGTATAGCCATTTGAGCTAACAATACAGTAAAGTCTT 350937 30 100.0 34 .............................. TATTATGAGCCAGGACCGCTATATCAGTAAATTG 351001 30 100.0 36 .............................. ATACTCATGAGTAAGAATTTAGGCGACAATGTTACC 351067 30 100.0 35 .............................. TTTTCTAATATATTTCCCCTTTTCAGGAACTCTTC 351132 30 100.0 35 .............................. AAGAAGCAGGACCGATAATAGACCAGGTTTGGGCG 351197 30 100.0 36 .............................. AATAAAACTTACTTCAGGAAAATTTTCTTAGGCTCG 351263 30 100.0 36 .............................. ATAGTTCATACTGGTACTTAGCAGCATCGTAAACGA 351329 30 100.0 34 .............................. ATAAAAAACTTGTACAGGTTACAAATCCTGTAGT 351393 30 100.0 38 .............................. AGCTGTGTGTACTGATACAGACCTTCCCTGAATACCTT 351461 30 100.0 36 .............................. AAACCACGGCCGCGCTGCTGTGGCAGATAAATATTT 351527 30 100.0 34 .............................. AGACGGAACACCGGATAGGGATGGTCATCAAATG 351591 30 100.0 36 .............................. AGTTCTCCTGGCTAACAGCGTCGTCTGTGGCTATGT 351657 30 100.0 36 .............................. AACAAATCATCTGGGAAAAACACCTTAATGGGGAAT 351723 30 100.0 36 .............................. CAGTTGTAAATAACGAAGCTTCCTGGGGTACCAGTG 351789 30 100.0 36 .............................. CTGTCTTACGATAGCCAGAGGAGGTCCTTGCTTGTT 351855 30 100.0 37 .............................. AAGCATCTACTGCTCAAATGGATCTTCTGTTTAAGGA 351922 30 100.0 36 .............................. CGGCCTGTGCCTTTAGGGCTGCAATTTCTGCTTCCT 351988 30 100.0 38 .............................. ACTGAGCTAACCGGTAATATATTTAGGTTTCTAGGGTA 352056 30 100.0 36 .............................. AACTCTCGCGCAGGCCGGGTGTGTCCGCGCAGACTA 352122 30 100.0 36 .............................. TAGGTTCCCTTCTACCTGCAATCTGGAGGCGCGTGC 352188 29 96.7 37 ........................-..... ACTAAACAAGGAATCGAATACCACCCGCTTGATGTGG 352254 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 72 30 100.0 36 CTCTTAATCGGACAATAGTTGAATTGAAAT # Left flank : GTTCAGTCATTTTGTTATTTTTTTTAATATGTATATCATCTTAGTATATGACATTAGTGAAAAAAGGGTTGGAAAAATGCTTAAGTTATGCAGGAGATACCTGAATTGGATTCAAAACAGTGTATTTGAGGGTGATATCACAGAGGTTGGTTTAAAGGAATTGAAGTATAAGGCGAAACAAATTATGAATACCGGAGAAGATAGTATCATTATCTTTAGTAGTAGAGATGCAAAATGGCTTGATAAGGAAATAATAGGTCAGGAAAAAAACAAGCTAGATAATTTTCTGTAGTTGTCGGTGACTAAAAAAATGTTTACTATGAGTTCTTTGACATAATCAAAATACTTACGATATTGAACCTAGTAAAGGGATTTTGCAGGTTGTCGACACCTACTGTATTTCCCGTTATTTGGGGTCGACGACTTTTATTACAAAAAATTTGATAATCTGAGTTTTAAAAGCCTTATCCATAGGCTTTTTTTTATTGTCGAAATGACGG # Right flank : TGCGGTACTTCCAGAAGTTCGCGCATAAACAATAGTTGAATTAAAACATAAATACCCCCCTAAGTTGGTCATTTTTATTAAGGCTCTTAAACCTCACGCCTAAACGCCATCATTATAGAGTAAATTACAGCGTAAAAACAAAAGACCCGCGCTGCGCGCAGGTCTTCAGCCTTATCCAGTGATCCCGCTGGGACTCGAACCCAGGGCCCATACATTAAAAGTGTATTGCTCTACCAACTGAGCTACGGAATCATTTCGGGAGTGCAAAAGTATAAAAATTCTCATCACTTCCAAAAAAATTTCAATAAACAATTTTAACCCCGGCGTTGTAAAAGGTAAAACAGTCAGCATGCTCGCAAACCCAGGACAACCTGTCAACGTCACCACGCTCGAAAACTTCTTCCCCGGGTACTTTGCACTCGTAATGGCCACCGGCATCGTTTCTATCGGACTGCACCTATGGTCATACACGCAACTGGCGCATATTTTCCTGGGGATAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTTAATCGGACAATAGTTGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 1 61171-58574 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHUWJ010000019.1 Chitinophaga sp. sic0106 NODE_19_length_143101_cov_39.791200, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== ============================================================================= ================== 61170 46 100.0 30 .............................................. CGGAATTGGTGTATATTTTCCCGCGCAGAA 61094 46 100.0 30 .............................................. TAATACAAGTGGATTTCTAAAGTCATTTGC 61018 46 100.0 30 .............................................. ACTCTCTTGTAACTGATAATAACACTGGAG 60942 46 100.0 30 .............................................. ATGCCAGAACACCGCCTTCGCGGTCATTTA 60866 46 100.0 30 .............................................. TTCTTCTTTCAGCGCCGCCTCTTTATATGA 60790 46 100.0 30 .............................................. ACCGCCGCCGGTAGCCAGCTGAAAAACGAC 60714 46 100.0 30 .............................................. TGTCCGATTAAGAGGGGGTTGTAGATGGGG 60638 46 100.0 30 .............................................. AATCATCCCCGCATTCATTACATTTCAACG 60562 46 100.0 30 .............................................. TAGTTGGTGGTGGTCCAGTTTACAACATTG 60486 46 100.0 30 .............................................. CTGCTGGTCCTGTTTGATTTTAGTTAACTG 60410 46 100.0 30 .............................................. CCATGGCTGCATAAAGCCCAAAAATTGCCA 60334 46 100.0 30 .............................................. CTTCGGAGATGAAGAATTATAAATCCAGGC 60258 46 100.0 77 .............................................. GATATCGTAAGTCTAGCCGGTACCGGATAGGTTGTGTTCTACTAAGGTAGAAATGCGATTGCCTTTTCAAGAAACGC 60135 46 100.0 30 .............................................. TCGCAGCGAGTTCTTCATACCCTCCACGCC 60059 46 100.0 30 .............................................. TTTATCAGCTTCTGAATCAGCTTCCAACTT 59983 46 100.0 29 .............................................. TATAACCCACCCAGAAGGCAACTTTAATC 59908 46 100.0 30 .............................................. CGTATGACACGACGAGCAGCTACAGCAACA 59832 46 100.0 29 .............................................. TAACCACCGTAATCATCAATAAGGCTACT 59757 46 100.0 29 .............................................. TATAACCCACCCAGAAGGCAACTTTAATC 59682 46 100.0 30 .............................................. CGTATGACACGACGAGCAGCTACAGCAACA 59606 46 100.0 30 .............................................. GGTATACCTGTAGTAAGCCAGGATATATCT 59530 46 100.0 30 .............................................. GTGCAGAAGTAAGGAAGTGCAGGTTTTCTA 59454 46 100.0 30 .............................................. ACGATTTGCGCGCGCGCCTGGCTGCTGCAA 59378 46 100.0 30 .............................................. AGTTCAAAGAACGCAACTGCGCAACAGCGG 59302 46 100.0 29 .............................................. TTATCAGTCCGGATAATAAAAAAAGCAAA 59227 46 100.0 30 .............................................. CCGTTTTTATCCGCAGTTAGATACAAGCTA 59151 46 100.0 30 .............................................. GAATAGTACTGTGTAGCTGCGCGCTCTGCG 59075 46 100.0 30 .............................................. AAAGACGTATGCAGGGTTTATCTCTCCAGG 58999 46 100.0 30 .............................................. ATTGAGGTAGTCCAGGACACTTTGAATGTT 58923 46 100.0 30 .............................................. GTTCTGCCTTCACGGTATTCCTCTTTCGGG 58847 46 100.0 30 .............................................. ACCGTGTTCATGATCCATACAATCCCATTC 58771 46 100.0 30 .............................................. CCTACCCTCCGCACAACTACTTAAGGATGG 58695 46 100.0 31 .............................................. GGCGCCACGGAGGGGAAAGACCGAACTTTGT 58618 45 80.4 0 ..........G....TA...........CC.C........TT-... | ========== ====== ====== ====== ============================================== ============================================================================= ================== 34 46 99.4 31 GTTGTGTTCTACTAAGGTAGAAAGAAATTTGAAAGCAATTCACAAC # Left flank : TTTGGCGAAATGTTTTGACGGAAGCATTAGAAAAATTCTATATCCAGTTTTTCCTGATGGAGATATCAAATGATAAATTAAATACCAGGTTAAATGCATATCGGATTATGTGGGTGCTCGTTTTTTTCGATTTACCGATGGAAACTAAAAAGGAGAGGCGGAATTATGCCCTTTTTAGGAAAAATATTCTAAAGGATGGCTTCTCTATGTTTCAATTCAGCATTTACCTGCGTCATTGTACTAGTCGGGAAAGCGCTGATACTCATGTCCGTAGAGTGAAATTGATGCTTCCTCCCAAAGGTCACGTAGGGATTTTGGTGGTGACTGATAAGCAGTTTGGACAAATGGAAATTTTTTCTGGACTGAGTTGTGTGAAGCCTCCGGAGACGGTACAACAACTGGAATTGTTCTAAATGGCTCCGTATTCGCATGTTTAAGCCATTTTTTTTATAGTTAAAAAACGTCCAAACCTTTTATGGGTAAAGGTTTGGACGTTTTCT # Right flank : CGATGTAAATTGATCAGGCTAGATCTGGTGCATAAAACTAATGTACAAAAGAATTAGAAAAAGTGAAAGAAACGATTTGATGATTTCCCTGCATCGACCGATAGGATCGATAGAAAATATTCAATGCAAAAAGTTCGGTTTTTTTCAGAACTTTTTTGTATATTCGTATAGGAGTTTTATTGCGAAATGCCGGTTTTACTCCAAGCCTTAACCATATCAAAATGAGAATCTTTGGCAAAAAAATACTTATCAAGCTAAAATTAAAAAACAAAGGAAATAGGAAACTCTGTGATGCTGTTGATAAATTGGTTGAAGACCTGGAACAGTTTGATCCAAGGACATCGAAGTTGGCAGAGATTAGAAAGGACGCTGATTGTGTACATAGTGATGGCTTCTATTTTCTTAATATTCACGTTCATCGCACGTTTGTGCTGATTGATTTTGACGAGGAGGGAGAAGCCACCATAATATGGGCGGGCACGCATGACGAATATGAAAGG # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGTTCTACTAAGGTAGAAAGAAATTTGAAAGCAATTCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.39%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.70,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //