Array 1 61949-62111 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV835599.1 Neisseria sp. HMSC078C12 Scaffold80, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 61949 32 100.0 33 ................................ CGTTGCGCTTTTCGATTGTTGCCATTAGTATAT 62014 32 100.0 34 ................................ AGCAATATGCGTAAATCCTTATGACCGCTGATTT 62080 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ================================== ================== 3 32 100.0 34 TCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Left flank : TTCGAATGCGACATCGCACCCGATCAGTGGGTTGTTTTAAAAGACAAACTTTTGAAAACCTACAATCCCGAAACCGACAGCCTGCGCTTTTACCATCTGGGCAGCAAATGGCGGCGGAAAGTAGAACATCACGGCGCGAAACCGTCGGTGGATGTGTTTAAGGATACGTTGATTGTGTGAATCGCCAACCTACGGTTCTCATGAAAATGCGGCAGGGGTGGCGAATTAGGATTGTTCTTTAACAATCAGGATATTGCGAATGCAGGTGTAACGGAAAAGGCTGTGTTATACTTGCGTTCGCGCTTTTCTTGGGAGCCTAGCGAAATCGGGGCTGCGAAACCTGATGGAGCAAGGCTTTTGAGAGAGGCTCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CAAAGTAAGGCATTTAGTGGCACAAGGTCGTCTAAACCAGCCGGCTGAGTGTTGAAACTCTGCCACCGTATCTCATGTCTGAGTAGGGAAGAGGGCTGTATGTTCAAATATCGTCCAAGCAGGCCACTTTTCTTTTGATTCTTCGCTTTCTGAAGCATTAGTGAAAGCAGTAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCCGTCTGAAAAAGTTTCAGACGGCATTTTTTCTATTTACATATTAAATTTAATATCATATTATCATTGCATGATATCAGTCTGAATTTTTTAGAATTTTAATATGAAACCCCTAATTTACTACGCCCATTCCGCGCAAGATGAACTCGGCAATCTCTTGCCTTACGAACACTGGCAAACCTTGCAAAGTCATTCGGTAAATGTTGGGGAAATGGCGGCGGAGTT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-16.10,-16.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.42 Confidence: MEDIUM] # Array family : I-C [Matched known repeat from this family], // Array 1 14161-14514 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV835621.1 Neisseria sp. HMSC078C12 Scaffold274, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================================================================== ================== 14161 36 100.0 30 .................................... GCGGCCGCCAAGACAGACGTCGAATTAAGA 14227 36 77.8 84 ............................NNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 14347 36 77.8 30 NNNNNNNN............................ ATAAATAAAACCGTCCTTATTTTGAGTAAG 14413 36 100.0 30 .................................... TGCATGGTAATACCACGCTATAAGCAAATG 14479 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ==================================================================================== ================== 5 36 91.1 44 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : AAGGATAATGACATGCGTCATCGTAATGGCAACCGCAAATTAAACCGTACTAGCAGCCACCGCGCTGCGATGCTGCGCAATATGGCGAATTCCTTGTTGACTCACGAAACCATCGTGACAACTTTGCCGAAAGCAAAAGAATTGCGCCGCGTAGTTGAACCCTTGATTACTTTGGGTAAAAAACCATCTTTGGCAAACCGTCGTTTGGCTTTTAACCGCACTCGCGATCGTGATGTTGTAGTTAAATTGTTTGACGAATTGGGTCCACGCTTTGCTGCTCGTAACGGCGGCTATGTTCGTGTACTGAAATACGGTTTCCGTAAAGGTGACAATGCTCCTTTGGCATTGGTTGAATTGGTTGATAAAGCAGCTGATTCTGCTGAATAAGCAAATTGATATGAAAGCACTACCTGTTTAGGTAGTGCTTTTTTCATTTAGGAAGTCTCTATTTTATTTTGCAACGCTACAATTTTATTGTTTCATTCAATGGGGTGAATATA # Right flank : TTAATCACCGTAACTTCAGGCTTAAACGGCCGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTCCCTTTCTCATTTCGCAGTGCTACAATTTGTACGTCCAAATACACCGACTCCAATATGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATTTCGGCGCATGAGACAGCCAGTCATTGCCAGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATACAAAAAGGCGGTCATATCGTAATCAACTAGTTGTAGCTCCCTTTCTCATTTCGCAGTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTCCCTTTCTCATTT # Questionable array : NO Score: 4.41 # Score Detail : 1:0, 2:3, 3:0, 4:0.55, 5:0, 6:0.25, 7:-1.19, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.41 Confidence: HIGH] # Array family : NA // Array 2 14670-14903 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV835621.1 Neisseria sp. HMSC078C12 Scaffold274, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 14670 36 83.3 30 NNNNNN.............................. TTGTACGTCCAAATACACCGACTCCAATAT 14736 36 100.0 30 .................................... TTCGGCGCATGAGACAGCCAGTCATTGCCA 14802 36 100.0 30 .................................... ACAAAAAGGCGGTCATATCGTAATCAACTA 14868 36 83.3 0 ..............................NNNNNN | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 91.7 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : CCCTTTCTCATTTCGCAGTGCTACAATGCGGCCGCCAAGACAGACGTCGAATTAAGAGTTGTAGCTCCCTTTCTCATTTCGCAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCCTTTCTCATTTCGCAGTGCTACAATATAAATAAAACCGTCCTTATTTTGAGTAAGGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATTGCATGGTAATACCACGCTATAAGCAAATGGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATTAATCACCGTAACTTCAGGCTTAAACGGCCGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTCCCTTTCTCATTTCGCAGTGCTACAATACGGACGACACAAAGAAGACCGACAGCAGCGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATTAAATCGAACCGTCAACCGATACAACCTCTGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATGCTGCGGCGGCTCGGGCGTTGGCTGCGCTTCGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATCGTTATCGCCGCTTGGAAAGTGGATAGCAAGTTGTAGCTCCCTTTCTCATTTCGCAGTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCCTTTCTCATTTCG # Questionable array : NO Score: 5.45 # Score Detail : 1:0, 2:3, 3:0, 4:0.59, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [6-6] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 3 14992-15678 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV835621.1 Neisseria sp. HMSC078C12 Scaffold274, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================================================================== ================== 14992 36 83.3 30 NNNNNN.............................. ACGGACGACACAAAGAAGACCGACAGCAGC 15058 36 100.0 30 .................................... TAAATCGAACCGTCAACCGATACAACCTCT 15124 36 100.0 31 .................................... GCTGCGGCGGCTCGGGCGTTGGCTGCGCTTC 15191 36 100.0 30 .................................... CGTTATCGCCGCTTGGAAAGTGGATAGCAA 15257 36 83.3 86 ..............................NNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 15379 36 77.8 30 NNNNNNNN............................ TAAAGAACGGTTATATGGCATTGAATAATA 15445 36 100.0 30 .................................... GCGGCTTGGTTGCTGTCTTGGTTGTTGTCT 15511 36 100.0 30 .................................... CTTGCAAGGCTTCTTGGATTGCCTCTTTCA 15577 36 100.0 30 .................................... CCATTTCGGCAGTTTGTGCTTTACTTGCGG 15643 36 83.3 0 ..............................NNNNNN | ========== ====== ====== ====== ==================================== ====================================================================================== ================== 10 36 92.8 36 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : TTCTCATTTCGCAGTGCTACAATTAATCACCGTAACTTCAGGCTTAAACGGCCGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTCCCTTTCTCATTTCGCAGTGCTACAATTTGTACGTCCAAATACACCGACTCCAATATGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATTTCGGCGCATGAGACAGCCAGTCATTGCCAGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATACAAAAAGGCGGTCATATCGTAATCAACTAGTTGTAGCTCCCTTTCTCATTTCGCAGTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTCCCTTTCTCATTTCGCAGTGCTACAATTGATGGCAGTGGTGGTTTTATCGGATTGCAGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATGAACATACTGAATGAGTTCGCGTGCCGCATGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATTCCTCAAACTATCAAGAATCATTTGAATAAGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATAAATGATGCGGTTACAAAAAAGCCTTGTTTGTTGTAGCTCCCTTTCTCATTTCGCAGTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTCCCTTTCTCATTTC # Questionable array : NO Score: 5.42 # Score Detail : 1:0, 2:3, 3:0, 4:0.64, 5:0, 6:0.25, 7:-0.47, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCNNNNNN # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [6-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 4 15767-16066 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV835621.1 Neisseria sp. HMSC078C12 Scaffold274, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 15767 36 83.3 30 NNNNNN.............................. TGATGGCAGTGGTGGTTTTATCGGATTGCA 15833 36 100.0 30 .................................... GAACATACTGAATGAGTTCGCGTGCCGCAT 15899 36 100.0 30 .................................... TCCTCAAACTATCAAGAATCATTTGAATAA 15965 36 100.0 30 .................................... AAATGATGCGGTTACAAAAAAGCCTTGTTT 16031 36 83.3 0 ..............................NNNNNN | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 93.3 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : CCTTTCTCATTTCGCAGTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCCTTTCTCATTTCGCAGTGCTACAATTAAAGAACGGTTATATGGCATTGAATAATAGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATGCGGCTTGGTTGCTGTCTTGGTTGTTGTCTGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATCTTGCAAGGCTTCTTGGATTGCCTCTTTCAGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATCCATTTCGGCAGTTTGTGCTTTACTTGCGGGTTGTAGCTCCCTTTCTCATTTCGCAGTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTCCCTTTCTCATTTCGCAGTGCTACAATTACATTCCTTGACCAGTCTCGGCATTTGTCGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATCCGCCGTTAATAACTGCCCCGATATATAAGGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATTGCGCCCCAATAAGGGTAAACATATTATAGGTTGTAGCTCCCTTTCTCATTTCGCAGTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTCCCTTTCTCATTTCGCAGTGCTACAATACTCCAACGGGAAATCCTTATTCTATAAGGGTTTCCCGTTTTATTTTGACTAA # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [6-6] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 5 16155-16388 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV835621.1 Neisseria sp. HMSC078C12 Scaffold274, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 16155 36 83.3 30 NNNNNN.............................. TACATTCCTTGACCAGTCTCGGCATTTGTC 16221 36 100.0 30 .................................... CCGCCGTTAATAACTGCCCCGATATATAAG 16287 36 100.0 30 .................................... TGCGCCCCAATAAGGGTAAACATATTATAG 16353 36 83.3 0 ..............................NNNNNN | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 91.7 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : TTTCTCATTTCGCAGTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTCCCTTTCTCATTTCGCAGTGCTACAATTGATGGCAGTGGTGGTTTTATCGGATTGCAGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATGAACATACTGAATGAGTTCGCGTGCCGCATGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATTCCTCAAACTATCAAGAATCATTTGAATAAGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATAAATGATGCGGTTACAAAAAAGCCTTGTTTGTTGTAGCTCCCTTTCTCATTTCGCAGTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTCCCTTTCTCATTTCGCAGTGCTACAATACTCCAACGGGAAATCCTTATTCTATAAGGGTTTCCCGTTTTATTTTGACTAAAAAAGTGGCTTTAAAATAATAATAGTTGGTCTGAATTGACCCTTTTTTCTTGGGTTTTTAGCTCTCCCAACAGCAGTTTCATGGTGGCAAATTGCTTTTCTGTTACTTCCAAACAGCGGATTGAGCCTTCTTGCGGTAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCTCGACCTTTGACAATACGGCTGTATACGGAAAGTTGGAGCATTTGGTATCCATCTTTTAATAGAAACTGTCGGAATTGATTGGCAGCTTTGCGCTTGGCCGCCGTGGTAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAA # Questionable array : NO Score: 5.45 # Score Detail : 1:0, 2:3, 3:0, 4:0.59, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [6-6] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA //