Array 1 40425-39480 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAKBS010000003.1 Escherichia coli strain CAP39 contig00003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 40424 29 100.0 32 ............................. AATTTCTGGAAAAAAACAAATTCAAAAAATTG 40363 29 100.0 32 ............................. TGACTGCGGTTCAAAATCTCCGGCACACGTCC 40302 29 100.0 33 ............................. TCGTCGTTTATTATTGATGCTGATGTTTTTGCC 40240 29 100.0 32 ............................. GATACCGCGATTCATGCGACGATAAAAAATAC 40179 29 100.0 32 ............................. ACGAGGTACAGTGGTGCAAAAACAAATTATAG 40118 29 100.0 32 ............................. CACCACATGAACCGCGACGCAGCGATTCACCG 40057 29 100.0 32 ............................. GTTATTTTTTCACTAATTTCGGTTAGAGGGAT 39996 29 100.0 32 ............................. GGGATGAAATTGAACTTCCAGGCGACCGACAA 39935 29 100.0 32 ............................. ATTGATAACTCGCGCTCATCCATTTTGAATTA 39874 29 100.0 32 ............................. GTCTGTGATGGTCTGCTCGTGAGTCCGCGGCG 39813 29 100.0 32 ............................. TAAACACAAGAAAAGGGCGGCACGGAGCCGCC 39752 29 100.0 32 ............................. GATTTTTCGCGAACTATCCCGGCGTAATGCGG 39691 29 100.0 32 ............................. AAAATTCCATTTTATTACTGTCGGCAATTTCG 39630 29 100.0 32 ............................. GCATATTTCATGCAGCGTTCTGAATGAGTAAG 39569 29 100.0 32 ............................. GCGTGGCGCGGGGCGTATTCCCCGGCGAGTAA 39508 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 16 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 57114-55926 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAKBS010000003.1 Escherichia coli strain CAP39 contig00003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 57113 29 100.0 32 ............................. CCGGAGATCATCATATTCTGATACGTTCCGGT 57052 29 100.0 32 ............................. CGTTATTTACTGCTTTTTCATCCGCTCTGCTG 56991 29 100.0 32 ............................. ACTCCGATAGCCTGCTCAGAATTAAGGCGCAG 56930 29 100.0 32 ............................. CTCTTTCTCAGTCATCTGGCGCTCAACGCCGG 56869 29 100.0 32 ............................. GCAGCAATTGCCGGAGTTTTACTAATTGCCTC 56808 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 56747 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 56686 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 56625 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 56564 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 56503 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 56442 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 56381 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 56320 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 56259 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 56198 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 56137 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 56076 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 56015 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 55954 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGAATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //