Array 1 173717-173093 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBDS010000006.1 Amphibacillus cookii strain DSM 23721 Ga0454031_06, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 173716 32 100.0 36 ................................ AACCACGTTTTTAAAAACGTTAGCTGGGTTGATAGG 173648 32 100.0 34 ................................ TAATATTAACAGTGTTAAGCTAATAACTTGTAAC 173582 32 100.0 33 ................................ ATAACGAAAATAGAATTAACAAGAATAGAAGCT 173517 32 100.0 34 ................................ ATCTCTATGTCTTCTAGGCGGTTATCAGTAAACT 173451 32 100.0 33 ................................ CTCATCGGATATAGGCATAGAAGGGGTTTGTTC 173386 32 100.0 34 ................................ TACTCTTTTTGCATCAAATGTGATCTCAGATCGC 173320 32 100.0 33 ................................ CCACACATTTTACAATCACAGAAAAATTAAAAT 173255 32 96.9 34 ..........T..................... ACCATCCTTAACTACGCTAAATATCAACATTTAA 173189 32 96.9 33 ..........T..................... TTCTGTTTTAAACTTTGGGACTGTTTGATTTGG 173124 32 96.9 0 ..........T..................... | ========== ====== ====== ====== ================================ ==================================== ================== 10 32 99.1 34 GTCGCACTCTCTATGAGTGCGTGGATTGAAAT # Left flank : GTTTGGAGGTCAGTTTTTATCAAGATCCGGAGGTGGCTGAACCTCCAATACTATCCAATTGGTATTTACGGTTAAATCATCATCAAGAATGTTATTCAGAATTAAGAAAGGAATGGAAAGGAAAACCTAGTGAACTTACATTGGATAATTATAAAGTGAACGATCCAGAAGATCCAAATAAAGAAATAGCTTTATTATCACTCATTTTCCAATTAAATCAATTACTGATGCTGATCAACAACCCTATACCGTTTCCACATATGGCTTATGTTGAGATGTTCAATTCAGGTTTAAAGAAGGACAAACAATAAGGTTTTTAAATTTATTGTTGGTGCGAACCCTAAGCGCACATAAAATCCCTAAGGCACCCGCACCAAAAAAAGAGCGAAATATGTAAAAGTATGTAATCGATTTAAAAATAATTATGTGTTTTTATAAAGGTAGAGCGAAATTTATCTTAAAAGCAAGGTTAAATTTCCTTTATATAGGAGAATTTCGCT # Right flank : CGGTTGTTACTTTGTATTGACAGGAGAATGTGGAATGGGGTTTATGCCATGGTAAAAAGCCTACCTCTTTCAAGATAGACTTTTGTACCTACTTATTATTATTTCAATCCATGCTTATAGCGATTGTGATACTAAATTATGATAAAGTCATTTAAATTAGAACTGAGTTTAAAATGATTCAAAGATAATTCAATAACAAGTAAGTACACCCATATCTGCATATAAATAGTGCAGAAAGAAAGTGATACGAGATGAAGTTAAATAAAAAACTGACAATGAGTGTAAAAGTAGATCTTCTCCTGCCAAACTTGAATTAAAAATAGCTAAAACAAGCGAAAAAAGAGTGAGTTAGCGAGAGTATGTAGCCGCCCGATATGAAAAAGTACATGTCAGGCTGCTATTTTTATACTTTAAAAGGGGCATTTCTGTAAGGAACTAAATTTGACTGAATTTTCTACGTCGATATAGCTTGTCTCCATTTTCTGTAGATAGACACTCAC # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTCTATGAGTGCGTGGATTGAAAT # Alternate repeat : GTCGCACTCTTTATGAGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [58.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 182377-181548 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBDS010000006.1 Amphibacillus cookii strain DSM 23721 Ga0454031_06, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 182376 32 100.0 35 ................................ CTTGTGTTCCGTCACCGCTAACATCTGATCCTGAT 182309 32 100.0 34 ................................ ATCTTTTTCAATAGAGTGCATGTGAAAAGACACC 182243 32 100.0 35 ................................ ATAAATAATGTCTTGCCGATAAAAACGTCAAACTT 182176 32 100.0 37 ................................ AACTTTTTATGTTGCACTTCATACTCAACTAACGACC 182107 32 100.0 34 ................................ GGTTAAAAAAGGCAGAGTAGGTAAAAGGATTGGC 182041 32 100.0 34 ................................ TAACTTGATTAGAGTAGTTTTTCACAACAGACGA 181975 32 100.0 33 ................................ ATATTCAAATGGTGTCTTTAAAATAAAATTGTC 181910 32 100.0 36 ................................ ACATCGACTATTGGTTCAGTTACAGCTGGATTTAAA 181842 32 100.0 34 ................................ CCTTTTATCAGAAAATCATCATCGATATTAGCCA 181776 32 100.0 35 ................................ CTCATTTGTGGGCAAGAGCAACGACAAGAGAGGTA 181709 32 100.0 33 ................................ GTGATCGGTTTGTCTGGATGGCTATTTACAAAA 181644 32 100.0 34 ................................ ATTAGGGTCATAAATAAAGCGATCACCAGACCAA 181578 31 87.5 0 ......................AT..-...T. | ========== ====== ====== ====== ================================ ===================================== ================== 13 32 99.0 35 GTCGCACTCTTTATGAGTGCGTGGATTGAAAT # Left flank : AGACGAATATCCACCTTTCTTATGGAAGTAGGTGAAAAGAAATGCTTGTTTTGATTACATATGATGTTAGTACTTCAAGTGTAGGTGGTACCAAAAGGTTAAGAAAAGCAGCAAAAGTTTGTCAAAACTACGGCCAACGTGTTCAAAATTCAGTATTTGAATGTATTGTTGATTCTACACAATTTGAAGAATTAAAGATAGATTTAGAAAGAATAATAGATGTAGAAAAAGATAGTTTGAGATTTTATCGCTTGGGTGATAACTACAAGACAAAGGTAACACATATAGGGGTAAAAGAAACTATTCAATTGGAAGACCCATTAATTTTTTAGTGCGAATGATAAGTGCACATTAATTTACTAGTTGATTCGCACCATATTGAAGACTATTTTTTAAATAAAAGATAGTATTATAAGTGTTTAAATGTTGTAATTGTTTGTTTTTTAGTGATTTTTTCTTGAATTCCCTTTAAATCTAAGCATATTTAAGTAAAAATCGCA # Right flank : GTAAACTTCTTAAATATTGTTTGAAACCAAAGCTCCTAGCATTTCCTAACGTTTATTAGGCGCACCAATAGCACTATTTGGCTGAATAAAGCAGATGCTTCTTAAGCGTTTTTAGTTTTTTAATAATGAAATAAATTTAATGCAATACTATTGAATTGTTTAAGATACAAATAAAAAAGAGGAAACAGTCGATTGCTGTAGAATTAAGATAAATAACAGTTCTTTAAGACTGAGTATTTAGTATTGCTAGATATAAGTAATAAAGAAAGGAGATTACCAGTGAAATTATCACAAAACGTGCCTAATCTAACATTTGAAAAGTTAGAAGAAACTTTAAATACACTGAAAGAAAGGGCAGATAAAACGAAAGAGTCTTTAAACATCTCAATTATCACGCATATGTTTGGTGGTGGTACAAAGGCTGGAGAAGTTGATAAAGATATACCTGTTAGAGCAACTTCTATTCGGGGGAACTTGCGATTTTGGTGGAGAGCAACACG # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTTATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 190745-191508 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBDS010000006.1 Amphibacillus cookii strain DSM 23721 Ga0454031_06, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 190745 32 100.0 35 ................................ TTCATCGTCAATGCTCAAGATATCGCCGATGTCGG 190812 32 100.0 33 ................................ TTTCCTTCCTGTGCATTCGGAGTAGCCCCCTTT 190877 32 100.0 36 ................................ CTATCCGTCTAAAACAGAAATGAGATATACAACAAG 190945 32 100.0 34 ................................ GTATAAAAAGAGAGGGGGCGATTAAATGAACATC 191011 32 100.0 34 ................................ TGATTTTTTCCCTCGCGCTGTCGATATCGGCAAG 191077 32 100.0 35 ................................ CAGCCGCTATGCCGTTTTGTCCTGCCCAGTATTCC 191144 32 100.0 34 ................................ TCAAAAGCGTGATTTACTAGGTTATTGGGCAGAG 191210 32 100.0 34 ................................ CTATATTGCCGACATTGTGCCGACGCATTAAATG 191276 32 100.0 35 ................................ GTCAGCCTTGCTACATTGGTGCTTATTAATCTCCG 191343 32 100.0 36 ................................ CTTTGACACCGACCTGTGTCTTTTCTTGACGCATAT 191411 32 100.0 34 ................................ AAACCCCTAAATACCTGTTATGCCATGCGATTGA 191477 32 96.9 0 .....................C.......... | ========== ====== ====== ====== ================================ ==================================== ================== 12 32 99.7 35 GTCGCACTCTTTATGGGTGCGTGGATTGAAAT # Left flank : TTCGGCGGATTATCAGGGTTTTGAACAGCCGCTAATATATATTCCTTAAATTCGGTTGTATACTTACCCATGTCATGAAGCAAACCTGCTAATCCTGCTAAATATTGCACATTAATTTTTTTCCCTATGTACTCTGCCAATTTACATGTTTCCGTTAAATGTTGTCTCACTGTTTGTATTTCACCATCGTTAGATCGAATATGTGCAATATACATGCAACAATCACCCCGGTAATAAAGTCTTATTTATATGAATATTTTACCATAACCCTTCACTATTTTCAAAGTTTTTGTTAAAATAAAGTCAAATATTGATGATTAATGTAATTTGGTGCGAATGTTAAGCTCACATCAATTTCCATGGGGATTCGCACCACTATTTATTAGTTAACTAGGTATTTTGATTTATTATCTAAATCAATTCATTGTTAATTGGCTACAAAAATTATTTAATTCTTAGATAAAGCCAACTTTTTTGGATTAATTTAGGTGATAATCGCA # Right flank : TAAACCTATGACGGTATAATGCAAGCGAAGATTGTCGTCGCCTCTTCATGGTTCGTCTATCTTTTTCGCGTAAAAGAAGACATTCTAAAAGGCTTATCACATCATTAAAGTTAGCTCAAAAGCACTTAATAGTTAGATGTGATGCAGCCCTATCAAATTTAACTTATAATTTGTTAAAAATATTTGATTATTTCATTTTCATAGACTTTTCACTTATACAAGTGAGCTACTAAGAGGGTTTTTTTGAAAAAGATAAAAATACTGTTTTTTATTATTATTAGCTCTATTTTTTTCTTTTTATTTTATTATTACAACGGAACTGTAACTGAAGGTTATTTCACAGTTGCTGAAGAAAATATTTTAGTTGAGAAAGAGAATACCTTTCTTTTTTTAAATAATCATAAAATAGAAGTACCCCCTCATTTAATTAGCAACATTAAATGAGGAGAAAGGCACCATGTACGCTTTTCTGGAAATAGAATATTTAAAAACAACAATAA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTTATGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //