Array 1 362647-364594 **** Predicted by CRISPRDetect 2.4 *** >NC_002663.1 Pasteurella multocida subsp. multocida str. Pm70, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 362647 28 100.0 32 ............................ AAAACGAAGCCGAAAGATAAAAATATTAAAGA 362707 28 100.0 32 ............................ ATGAAAAACATTGATGTGCACTGTCAGATTTT 362767 28 100.0 32 ............................ GCCTTATTCTAAAAATTGGCGCATATCAGGTG 362827 28 100.0 32 ............................ GTAAAAAACCTTTGTGCACTTAGTGAAAGCGG 362887 28 100.0 32 ............................ ATATAAAAACTCTGAAAATACACTGTGCCTTG 362947 28 100.0 32 ............................ TCATCAGTGGATTAGCGAGCGTTGCCGGCACA 363007 28 100.0 32 ............................ ACATTCCGACTATGTCTTCATAACCGCATGAA 363067 28 100.0 32 ............................ CACGGCGGGAAGTAGTATTTTGAATCTTTCTG 363127 28 100.0 32 ............................ ATGCGAATTAAGTTTAAAAACAACTCGTCGAT 363187 28 100.0 32 ............................ ATTAATCAAATGCTTACCAAGGCTACTACTAA 363247 28 100.0 32 ............................ GAGCAATTCACGTTGTGCATAACGCACGTTTA 363307 28 100.0 32 ............................ GTCAGATATTTTTACAAGAATGCCTGCTTGGA 363367 28 100.0 32 ............................ GCACTTTGTGCATCGGCTTTTTTATTGCTCCG 363427 28 100.0 32 ............................ AATCTCTAATTGTTCTTTCCGCTCTGTCATTT 363487 28 100.0 32 ............................ GAACATATCCAATTTTAATTTGCTGATTTATT 363547 28 100.0 32 ............................ TTCCCAATTCGAGTGGTATTGGCTTGGTAAAT 363607 28 100.0 32 ............................ GTCAAGTGTTTGAAAATATGCTCTACGCCTAC 363667 28 100.0 32 ............................ GCACTTGATCCGCCACATCCTGCGGAATGGTT 363727 28 100.0 32 ............................ TTAATCCCAAAGTTTTAATGAATCTTTTTTGA 363787 28 100.0 32 ............................ ATAGCGGCTGAACTCTCAAAAGATTGACCGAG 363847 28 100.0 32 ............................ TAAACAAACAAGCTAGAGATAATCCCCAGTTA 363907 28 100.0 32 ............................ AGCTGGGCGGATTAGAGAATTTACGGTTTAAC 363967 28 100.0 32 ............................ GTTTGAGAAAAAGGTGCTTTGCTCGACTTGTT 364027 28 100.0 32 ............................ AACCGATCCAACTCACCATGGAGGAAGCGAAT 364087 28 100.0 32 ............................ AAAAACCGATCTTGTGTACAAGTATCAAAAGA 364147 28 100.0 32 ............................ TTGGTGATTCGTACAGTTGAAATCAACGGCAC 364207 28 100.0 32 ............................ AATTTCAATCATCTCGAAAATATCTTTACAAG 364267 28 100.0 32 ............................ ATTGATTGAGAGTGGATATGTTTTCTCACCGA 364327 28 100.0 32 ............................ TTTCAGTCTCTGACCGCCAGCATAGACCCAAC 364387 28 100.0 32 ............................ GACCCCATTGGTCTAATTTCGCCCACGGGATT 364447 28 100.0 32 ............................ TTCCGCATATTCAACCGTATTATCTTCAGTTG 364507 28 100.0 32 ............................ GCAAGTGGCACTTGTGCGATTGAGCCGTATTT 364567 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 33 28 99.9 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGCCTACCGAACACCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAAAGTTTTCTAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : AACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATGCCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAAACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCCAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1322127-1322492 **** Predicted by CRISPRDetect 2.4 *** >NC_002663.1 Pasteurella multocida subsp. multocida str. Pm70, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1322127 36 100.0 30 .................................... CGAGCGAGTAAAAACATCATTTTCTCGTAC 1322193 36 100.0 30 .................................... TTTACATCAATATGTTCTTTAGCGTGGCAA 1322259 36 100.0 30 .................................... AACCCCTGCATTGTAGGGTTAAGCTTTCCT 1322325 36 100.0 30 .................................... TAAACCACTAACCGATAGCCAATTATTAGC 1322391 36 100.0 30 .................................... CACTTTTAACACTCACATCAGTGACAAGGT 1322457 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 100.0 30 GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT # Left flank : ACGCTATGTTTTTTTTTAAGCTTGTCGACAATTTTGTCTGAAATGATTAATTTCATATCCATTTCGGGTACCTATAAATTTTTCATAAATATTATTATTTGCTATAAACATAAATCCTCCGCATATTGTGTATATACAATTGTATATACAATAAAAAAAAAGTCAACCCTTTCTTAGCAAAAAAATATTACTTACCTTTATTCAGGTGAACGGGTGACAAATTATTAAGCAATTTCTTTAAAAGATGAGGGGAATTTACACACCACTCACAAAACTGCGTTTTGCCTTTAAAGCCAGTAATATCAAGGGATTGTAAAAAAGCTGGTTAAAAGATGCGCGTTTTTTTTGTGGTTCAAATTTGAACCAAAAAATAGCACAAAAATACAGCTAAACAGGCGGTTGGATTTGGAGTAGACCCGTTAAAAATGAAAAAAGACTACGCTATTTTTCAATTTTAACGTGCCAAGATTATACCAGTTTTTAGAAAAGATATTATGTCA # Right flank : TCTCGTGTCCCTTATCCCTTGTGGCACAAGGGATAAGGGCGTTTTTAATGCTCAAAAATTACTTGAATTCACGATATTAAGCATTCTATTTTTAGAAAATTTTTCTTAAAAAGTCATTGATTTTGTCTGACTGGGATAACATCTGTTGTATGTTACCCCTGGTTCTGAGATGCGCTAGGCTAAAATAGAGAATAGTCTTTTTGTCTATTTTTATAGAATAGGTAAATAGTTTACTTAGAACAGCAACATTTGATTTGCGTTTACTTTTTTCTCTTGAAGTCTCAATCTCCCCAAGAGTATTTTCATTCCTGCAAATTGCTTTTCTGTCACTTCTAAACAACGTATTGAACCTTCTTCAGGGAGGTGTTCACTGAGCCGTTTATTATGCTTTTGCATGGAGTCTCGACCTCGAATAATTCTAGCATATACAGAAAGTTGTAACATTTGATAACCATCTTTTAATAAAAATTGACGGAATTGATTTGCTGCTTTACGTTTTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 3 2080625-2082965 **** Predicted by CRISPRDetect 2.4 *** >NC_002663.1 Pasteurella multocida subsp. multocida str. Pm70, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================================================================ ================== 2080625 28 100.0 32 ............................ TTTTATTAATGATGACGGCATATGGGGTATTC 2080685 28 100.0 32 ............................ CAAGGGGTTTCTCACCGGAAAAAGCAAAAGCG 2080745 28 100.0 33 ............................ AGTTGATTTGCAAGAATTTATTAAAAAATATAA 2080806 28 100.0 32 ............................ GATAATCTCATCTCGCACACAGAAGACAGCAC 2080866 28 100.0 32 ............................ AAAAGATTTTTTAGCACGTTTTAGCGACTGGC 2080926 28 100.0 32 ............................ GACGGAAGACCAAAGTTCTTTTGAATAAGAAA 2080986 28 100.0 32 ............................ ACATATGCAGTAATTGACATGTAAAACCCCTT 2081046 28 100.0 32 ............................ ATTACTTCACCTCTTGCTCAAATGGGGTAATG 2081106 28 100.0 32 ............................ TTTTGCACAAACAATTAGGTCACCAATCTATC 2081166 28 100.0 32 ............................ AAGATAGCCGAGCAGGGCGCAAAAGCTATTCT 2081226 28 100.0 32 ............................ GCTTATGTATCGCGTTTTTTAATTCGACGTAT 2081286 28 100.0 32 ............................ AGAACCAGAACCTACATTTGTTCCACCTTGAT 2081346 28 100.0 32 ............................ GAATTTATTAACACTCAAAAGCTCTTGCCCAC 2081406 28 96.4 32 A........................... ATTATCCAATGAATACATGAATTAAATGATAT 2081466 28 100.0 32 ............................ ATAAAACCATTTTGTAAACGTTCGATATGCAT 2081526 28 100.0 33 ............................ ATTCAACAACACACCCCTTACCAGTTCCAGCTG 2081587 28 100.0 32 ............................ ATTTTTCCCTACAGTTTCGACTTCATATCCCT 2081647 28 100.0 32 ............................ GTTGGTTGTGGCGGAGCAGTGGATAACGATGT 2081707 28 100.0 32 ............................ TTATACTTTTTTACACTCAACCGCAGCGATTT 2081767 28 100.0 32 ............................ AGTCATTCTTTCGCAGATAAAGGGAAAAAAGA 2081827 28 100.0 32 ............................ TACTCTATCGAACCCCATCCAAAACGGCTGGG 2081887 28 100.0 32 ............................ GTTTGCAATGTGCCAGTTTTAATACCGACCGT 2081947 28 100.0 32 ............................ TCTTTTCTCAGGATTGTCTTTTAAATCCTGAT 2082007 28 100.0 32 ............................ ACCAGAAGAACTGTATAGCGAAATGCTTTATT 2082067 28 100.0 32 ............................ TGAATAACGTATTCAGACGGAATGCCACCTTC 2082127 28 100.0 32 ............................ TGTGATTTTTACTCTTTCATTGGTTATTTTCT 2082187 28 100.0 32 ............................ CACCTAATGGGTTTAATTGTCGCTGTGCGGTG 2082247 28 100.0 32 ............................ TTCAAAGCTTTCCACCAGCTCTTGGCGTTGAC 2082307 28 100.0 32 ............................ TTTTGTTGCGGCACCGCCACCGCAGAAAATGG 2082367 28 100.0 32 ............................ GTTTTTTACTGAGCAAAGCGTCATTTTATTAA 2082427 28 100.0 32 ............................ GTTTTGAGAACACCTTCAATCCACGGAATAAA 2082487 28 100.0 32 ............................ ATTGCCGCCATTGTCTCGAACTCTTGCCCTGT 2082547 28 100.0 32 ............................ ACTAATATTCACTTCTTTGGCTGTTGTGCTAA 2082607 28 100.0 32 ............................ TTTGCGAGCAAAAAACCAGATAATTCCCGCAA 2082667 28 100.0 32 ............................ TATCTTCCACATTCCACGTTATATCGATTACA 2082727 28 96.4 124 ............G............... TCTTTGATTAATTCGTTATGAGTTTTATTCGTAGGCAGCTTAGAAATCTTTGATTAATTCGTTATGAGTTTTATTCGTAGGCAGCTTAGAAAGACTGGAGTGAGAATGTCGTCGAAAACTTACA 2082879 28 96.4 32 ............G............... GCGTGCTAGTTTGTCTGCTGTTGCTTTCAAGA 2082939 27 85.7 0 ....................-..TC..T | ========== ====== ====== ====== ============================ ============================================================================================================================ ================== 38 28 99.3 35 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGGATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGCTTAGCCCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAGCAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTGCGTCATAAAGATACAAAAAATATTGGTAAACGTCGCAAATCCAATACCCCCCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTTTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATCGGTTCCATACTTGATGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : TTGACTGTTGGTATATGACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCTATCAGTTTGGGATCCGTGGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTTACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGAATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTCTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAGGGCATCGTTTG # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.20, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //