Array 1 936938-937207 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016076.1 Actinoalloteichus fjordicus strain ADI127-7 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 936938 28 100.0 33 ............................ GCCCGGCAGCCCGGCCCGGCCGAACAGCTCGCC 936999 28 100.0 33 ............................ CCGGCCCATCTCGACACCGACGCCGCGAACGGC 937060 28 100.0 33 ............................ GGCCACGCCTGCCGCGCCCGCCACTTCCGAGGA 937121 26 92.9 33 ..........--................ GCTCACGCGGCAGCGCGAGACGCTGGCGCGGCG 937180 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 5 28 98.6 33 ATCGGCCCCGCACACGCGGGGATGGACC # Left flank : TGCCCCGGTTGCGGTGTCGGTGCTCGCCGATCCGGTCGAGGTCGATCGAGTGCTGGAGAACCTGGTGGCCAACGCGGTGCGCCATGCCAGGCTGCTGGTCCGGGTGACCGTCCTGCCCTTCGGGCGCTTCGGCAGGCTGCTGGTGGACGACGACGGGCCGGGCATCGAGGCCGAGCACCGCAGCCAGGTGTTCGATCGCTTCTACCGCCTGGAGGGCGACCGGGCGCGGGAGACCGGCGGGACGGGCCTCGGCCTGGCGCTGGTGTCCGAGGCCGTGAGCAGACGCGGCGGATCGGCCTCGGTGCACACCGCGCCAGAGGGCGGCGCCCGCTTCCAGGTGACCTGGCCCACGGCCATCTGATGAGCCGGGCGCCCGTATCGAGCGGGCAGGGGGAGCGCCGTCGCGGTCGCCGGGACGGCGCGAGACTCTGCGATCAAGTGACGTGGATCACGTGGTAGAGAATGACTTCCGCGTCTGACGAACCTGCACGTCAGCAAGT # Right flank : CCGACGCGGCCTACGTCCCGCGCTACGTTGGCCCGTCGGCCCAGCAGCACCAACACGCACGGCTGAGCCCCACGGCACGGGCCTGTGCCCGCCTGGGAGCCATCCCGGCCGCACTCGGGTCCTCGCCGTGCGCCACGGCACGGTGGCGGCCAGGGGGCGGGCAGGCGTACCGGGCCGGGCGCCCCCATCCGAGGCGCGGCGGTGGTGTAAGGATCGCGGGGTGCCGTTGCTGCGAACCTCCACGCTGATCGAGGCCGAGCCGCCCACCGTCGCCGCCGCCCTGCGGATGAATCTCGAGGCGGCACGCACCGAGGCCGCCGGGGTGCGCATCGAGACGGCGGGCGGGCGTGCCCTGCTGGGTGAGGGCGACCTGCTGAGCTTCGACGTCCCCACCTGGCTGGGGGCCCGCGTGCCGGTGCGGACCAGGCTGACCACGGTGCGGCCGACCGAGCTGCGGGCCGAGGCGGTGCCCGGGTCGCGGTGGCAGCTCGACCATCGGA # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGGCCCCGCACACGCGGGGATGGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 2 2218522-2218790 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016076.1 Actinoalloteichus fjordicus strain ADI127-7 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2218522 28 100.0 33 ............................ GTTTGTCCAGCGTGCGCTGCCGGCTGAGCGCGA 2218583 28 100.0 33 ............................ GCTGACTGACCTACCTGTCAGCGAATTGATTCC 2218644 28 100.0 32 ............................ GGACGTGCCGGGGGACGTGCCGTTTCCCCAGG 2218704 27 85.7 32 ....G...T.....A..-.......... AGTGCGCCGTCGTCGGTTTCGACGACGTGGAC 2218763 28 92.9 0 ........T.....A............. | ========== ====== ====== ====== ============================ ================================= ================== 5 28 95.7 33 GTCCTCCCCGCGCAGGCGGGGGTGAGCC # Left flank : CGGGGCCGGACAGTCGGTGCTCGTCGGCTTCGGACTCTCCGGCTGGACGGCGCTGGCAGTGCTGGTCGCCGTGCTCGGCATCCCCGCCGTGGTGATCCTGCGCGGGGATCAGGGGGAGCGCTGAGGGGCGGCCGGCGTCTCTCTCTGCGCCCGTGCGCTGTGAGGTTCGCTGACTGACCGCTTCCGCGCCACCGCCGCACGCTCGTCGCCGCCCGCGCGTCGCACCGCAGGAGACCGGCTGCCGCTGTCCCGTCGCCGGGTGGTCCGTGGGCCGCCGAACCCGGCACGCCATCGCGCCGGGCAGGGCTGCCCGGCAGGCCAGCTCAGACGTCGTGCGCGGCCGAATACTCGCGGCCCAGATCCCATCCGATGTCGGCCACACGGCTGCCTCGGCGGAGGGCTACGCAACGCTGAAGTATGGTGACCCCATGTGCTCGTCCCCTGCCGCAGAAGTGCATCACAAAGGGATAACGCGCTTCTAAAGGCCCAGTTCGCGAAGG # Right flank : CGGTGATCTCACCCGCCCCATCCCACACCCCTCGGCAGCCCGCCGCCCGGCGGACGTGCCCCGATACAGTGCACCCCGTGACTTTCACCCTGCTTCCCGCCGTCGACGTCGCAGCCGGTCAGGCAGTCCGCCTGGTCCAGGGCGAGGCGGGCACCGAGACCATGTACGGCTCGCCGCTGGACGCGGCCCTTGCCTGGCAGCGCGACGGTGCCGAGTGGGTCCATCTGGTCGACCTCGACGCCGCGTTCGGTCGGGGCACCAATCGGGAGCTGCTCGCGGAGGTCGTCGGCCGCCTGGATGTGAAGGTCGAGCTGTCGGGGGGCATCCGCGACGACGAGTCGTTGGCGGCGGCCCTGGCCACCGGATGCAGCCGGGTGAACCTGGGCACGGCGGCGCTGGAGGACCCCGTCTGGTGCGCGAAGGTCGTCGCGGAGCACGGGGACGCGGTCGCCGTCGGGCTCGACGTCCGCATCACCGAGCAGGGGCATCGCCTCGCCGCG # Questionable array : NO Score: 5.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCGCAGGCGGGGGTGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCGCCCCGCGCAAGCGGGGGTGAGCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.90,-11.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 2236413-2237051 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016076.1 Actinoalloteichus fjordicus strain ADI127-7 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2236413 29 100.0 32 ............................. CAGGCATCCCAGGAGTACCACCGTGCCGCCCG 2236474 29 93.1 32 .........................T..C CCGTCAAGGTCGATCTCGAATTCGTGATGCCC 2236535 29 96.6 32 ............................T TCCGGTTACACGTCGGGGGGATGTCGTTGTCC 2236596 29 100.0 32 ............................. CCCGCCGTGCCGCTGAGTCCGCCGCCGAGGAG 2236657 29 100.0 32 ............................. TGGTTGTCGCGGGCGCAACTCCGATCGGTCGT 2236718 29 100.0 33 ............................. GAGCGCGCGACGCGGATGCGGCAGGCGGCCGAG 2236780 29 100.0 32 ............................. CATCGCCGTCGAGCCCGGGTCTCCGAGGTTCA 2236841 29 100.0 32 ............................. ACCCTCGCGGAGCAGCCAGGCGACGGCGCGGA 2236902 29 100.0 32 ............................. ATGTGGGCCTGGGCGCGGTACTTCGGCGGCGG 2236963 29 100.0 32 ............................. GCGGGCCTACCGCCTACCGCGCAGAACATCCA 2237024 28 75.9 0 .C.........CC.A..A.....-T.... | ========== ====== ====== ====== ============================= ================================= ================== 11 29 96.9 32 GTCCTCCCCGCGTAGGCGGGGGTGAGCCG # Left flank : GACCGGCGAGACGCCGGCGGTGCGTCCTCTGAACGGGGTGCCTCGGGGCCGGATGCTTCGGACTCCTCGGGGTCCTCGGGGAGCCGTGCCGAGGTGAGCGTCTCCTCGACCGCCGATGCCGGGGTCTCTTCCGGCTCTTCGTCGTCTTCGTCCTCGTCTTCGCCCTCGTCGGACTCGGGTTCCGGGTCGGACGGCGGCGGTGGCGGCGGTGACTGAACCGGTCGGCTGACTGACTTGGGGACTGCCCGCCGCGCTCTTGTGCGGCGGGCAGTCTTGTTCATCGGGGGATTCGCGGCGTTTGGAGCGGTCCGCTTCCGGGCGGCTGCGGAGCCGAGGTCTCTGGCGGGCCGCCGACGCCCGCTGCCGAGGGCGACCCCATGCGGCGGCACTCAGACGAGCGCTACTCGGCGCTGAGGTATGGTGACGCCGTGTGCCCAGTCAAGGCTGCAAGAATAAATCACAAAAGGATAACGCCCTTCTGAAGCCCCAGGTCGCGAAGG # Right flank : GTACGCGCGAGCCGGATAACGGGACCTGCGTGCCCCGAGACGCCACGTCACTCACCGGGAGCAGCTCAGGGTAGAACGACCCTGATCACCGTCCCCCCGAGCAGAGCCGACCGCCCAGGGCGGCCAGCAGGCGCCCGAGGCCCGCCGGGATCTCGCCCACATTCCTCGCGCGACCGCCCTCGGAGCATCCGACCCGAGCGGGCAGAATGGACGCCGGACATGCGGTGTCCCCCGATCGGGGCGCGGCGAGGCAGAGGCACGGCCGAACGGAGGCACGGTGGAGGGCGCTGAGTTGCGCGGGATCGTCGCGATGGACGGGCCGTCGGGGACGGGGAAGTCCACCGTCTCGCGTCGGCTGGCCTTCGGCCTGCGGGCGCGCTACCTGGACACCGGCGCGATGTATCGGGCCGTGACGCTGGCGGTGCTGCGGTCGGGGACCGATCCGGCGGACGCCCCTTCGGTCGCCAGGGTCGCCGCCGAGGCACGGCTGAGTGTGGGCA # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCGTAGGCGGGGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTAAGCGGGGATGAGCCC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.90,-11.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 2265169-2264489 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016076.1 Actinoalloteichus fjordicus strain ADI127-7 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================================================================================================================================================================== ================== 2265168 28 82.1 194 .C..T......T.C.....C........ GTCGCGTGATCGCCTGACAGCGCCACGCGCGATTCGCCATCCGAATGCCCGCCGGTGCGCGACATATGACCTGCCGACCACGGCCGGAGCGACTCCGGCCGACGCCCAGGCACGGCGACCCCAGGTGCCCTCAGGAGGCCTCACCCCATGATCACAAAACAATAACGCCCTCCTAGAGGAGCAGGTCGGTAAGG C,A,G [2265143,2265146,2265160] 2264943 28 100.0 33 ............................ CCGGTGTGGTGACGACCCAGGCGTGGTCGGTGG 2264882 28 100.0 33 ............................ CCCGGTGCAGGTGGTCCAGGAGGTAGAGCAGGT 2264821 28 100.0 33 ............................ GACCCGCCCGACGAAGCTGCGCGCGCGTCGCGA 2264760 28 100.0 33 ............................ GGGCATACTCCTGCGCGGGTCCGGGCGTCGGGT 2264699 28 100.0 33 ............................ GTCGCGGATGCCGAGTCTGTCGCACGCGGTGAT 2264638 28 100.0 33 ............................ GGGGATCGGCGGCGCGGCGAACAGCGCCCGAGT 2264577 28 100.0 33 ............................ GGCCAGGCCGGGTGCGCCTTCGGTGTGTCTGTG 2264516 28 89.3 0 .................C.....AC... | ========== ====== ====== ====== ============================ ================================================================================================================================================================================================== ================== 9 28 96.8 53 GTCCGCCCCGCGCAAGCGGGGGTGAGCC # Left flank : TCCACTGCTGGTGGAGCAGATCACCAGAGCACTGCCCGCCGCCGCGCCGCCGTCCGTCCCGGCAGGGCCTGCCGCCGAGGAAGCGGCGACATCATCCGAGCAGCAGACCGCCGACCTGAGCGGGGTCCGAGCCGAGGCGCACCGCGAACTGACCGTTCACCGAGGCACTGGAGGCGACGATGACTGAAGGTTTCCTAGGCGCCCTGGTGCGCGCGCTGGCCAGGAACACCCCCGCGTTCGATCCGCCGCGCGCGCAGCACTCCGACGGCAGGCCGGGCCTGCGCGCGGCGCTGGCCAGGAACTCGGCCGGACCTGGATCGTCCACTTCGGACGGCGGGCCGACGGATCTCGCGGGCCGCACCGACCGGAGTCGGATGCGAACCCGGCGGGAACGCGATTCCGCCGCCTCGGTCAGCGGCCTCCCGCGCGCGGCCGCGACCCGCGCGGGTCATGTCCCGGCGACGACGCGACCGAAGCCCGCCTGAGGCAGGCGAAGCTCA # Right flank : GTTACCGCTGCCCGTCCCGACTCGTCCGAATCCCGCCCGATCCGCAGGACGATCCTCGTCGGGCTCCGATTCGGACTCCAGGCCGTGCGCCGAGGGCGGGACTCCCACCAGGCTCCGAGTTCGACCGAAGGAGGCCGGCGGTCGGCGAATCCTATAGGATTTCGGGCCGCCTCAGCCTAGGGTGCAGGACGAAGGGTTGCCGTCGAGGCGGCTCTGGCGCACGGACGCGGGAGGCACGATGGCCGTCGGCACGGCAGAAACCGACCCCGGTCCCGCGACGACGACCGCGCCGCAGGGTCGCCGCAGGAACGTCCTGGTCGACGACGTCTACGAGACGATCAAGAACCTCATCATGGATCACGCGATCGCCCCCGGCGCCAGGGTCTCGATTGACGGGCTCGCCCGCACGCTTGCCGTCTCCCCCACCCCGGTCCGCGAGGCGCTGGCCCGGCTGGAGTCGGCCGAACTGGTCGTCAAGGAGCCGCTGCGCGGCTATCGGA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCCCCGCGCAAGCGGGGGTGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCGCCCCGCGCAAGCGGGGGTGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 2479012-2479417 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016076.1 Actinoalloteichus fjordicus strain ADI127-7 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ===================================== ================== 2479012 38 100.0 35 ...................................... GTCTTGATGGTGTCGTGCTGCTCCTCGGGGTTCGC 2479085 38 100.0 37 ...................................... TGATCCCATCGCGAACCAAGGAGACGACGTGTCAGCA 2479160 38 100.0 37 ...................................... AGGTCGGCGATGCGGATCTCCACATGCGGATCGAGCA 2479235 38 100.0 34 ...................................... TACCGGCGCGAGAAGGTGCGCCACGTCGCCGAGG 2479307 38 97.4 36 A..................................... CTCGCTGGCTGGACGGCGCGGCACACGCCGAGGGCC 2479381 37 94.7 0 ...............G..................-... | ========== ====== ====== ====== ====================================== ===================================== ================== 6 38 98.7 36 GGTGGCACCGGCCCTCCGGGGCCGGTGAGGATCGCAAC # Left flank : CGAACTGCGTGCCACGCCCGAGCGGCTGCTCCCGGTGGAGTGGGCGCCGTCCTCCTCCTCGGTGTTCCTGGTGGCCATTCAGGTCGAGGCGCTCGATCGGCACCGGCTGCTCTCCGACGTCACGAAGATCCTCGCCGACGAGCGGGTCAACATCCTCTCGGCCTCGGTCACCACCACCAGGGACCGGGTGGCGGTCAGCCGCTTCTCCTTCGAGATGGGCGACCCGAAGCACCTCGGCCACGTGTTGAAGGCGGTCCGCAACATCGAGGGCGTCTACGACGTCTACCGGGTGACCTCCACCGCCTGAGGCCCGGAGTCCTCGGCGCGAGCTGCGCAGGCCGTCCGGCGCGTCAGCGGGAACTGCGGTGTGCCGCCCGAGCCGCTTGGGGAGGGGAGGCGTCGGGCGACACGCCGGGTCAGTCCGAAGCGTTTCTTGGGCGTGTCGGTCACGAGTCGGTAACCTGGGGTCGCTTGATCACGCAACACCCCTGGAAGTACAG # Right flank : CGCCCGCCGCCGAGCGAGATCGCACCAACGCCGCCGAGCGACCCGCAGCCCGCCCACCCCGGCCCCTGCACACACCCGAACATGCAGACAGCCCCGGCCCGCCGTCAGCGGCGTCGACCGGGGCTGTCGTGGTCGTGCGGGGAGAGGATCAGCTCGCGATGCCGACGCTCTCGATGATGGTCTCGGTGTTCGGCGGACCGTCGCCTGCACCGGTGGCCTCGCCTGCCTCGGCGATCTCGTCGACCACGCCGAGTCCGGCCTCGTCGACGGTGCCGAAGACCGTGTACGACGGGGGAAGCTCGGAGTCGCCGTAGACGATGAAGAACTGCGAGCCGCTGGTGTCGGGGCCCGCGTTGGCCATGGCCAGCGTTCCCCGGCCGTAGGTCTCCTCGCCGGTCAGCTCGTCGGCGACGGCGTAGCCGGGGCCGCCGCTGCCGGTGCCCGTCGGGTCGCCGCACTGGAGGACCTCGAGGGAGCCCTCCGAGGTGACCAGCCGGTGG # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTGGCACCGGCCCTCCGGGGCCGGTGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-21.70,-19.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 6 2504428-2504157 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016076.1 Actinoalloteichus fjordicus strain ADI127-7 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2504427 29 100.0 32 ............................. TCCGGTGGCATCAGCGACGAGAAGATCAGGCT 2504366 29 100.0 32 ............................. TCCGACCTGACGTCCGCAGGCGTACAGGGCTG 2504305 29 96.6 32 ............................C GATGCACCGCGTCCGGGGCCGTGGTCGACGAG 2504244 29 96.6 31 .................A........... GGGCCGAAGAGAAGGCCTACTTCATCCGGGA 2504184 28 69.0 0 T..G....-....C.T....AC.....GC | ========== ====== ====== ====== ============================= ================================ ================== 5 29 92.4 32 GTCCTCCCCGCACGCGCGGGGTTGTTCCG # Left flank : GGGCCGGGCCGTCCTCCTGCTCGGCCAGCCCGCCCGCGAAGACGTGGGCGACGGCGGCCGCGAAGAACACGCCCGCCAGCTCCAGCGCCTCCCTGGCCCATCCCGGCACCCGTGGCGGCACGGCCTGCGGCGACCCTGGCGCCTGGGGCGGGTGCATCGGTGAGACTGTGTGCCGGGTCGAGTGATCGCGCCTCTGCGCCGTCCTGTCACTGGTCACGTTCCCAGGATTGCCACAGCGTGTTGCGGCCGATCGACCTGGCGTGACGATTCCATGAAGTGCCCGGCGGCGGTCTCGGCCCAGGCACGAGACACCTCGAGCTGCAACCACGAACGGGTGACGGGCAGGGTCGGATCAGCGTCCGACGGCCGTCGACGACGATCGCGTATCGTCACCGTTCATGGAGATTCGCTCGCGCTTCGGAATCGACATCCGGGCACTGGGCCGATTAGCAGTGAACGAGAATCCGGTTACCGGCGAGTAGAACCCCAGGTCAGCAAGT # Right flank : TAGCCGCACGCCTGACACCCTTCACTCGGGAAAGCGCAGCTCCCGAATGCGGGTCAGGTCGATGCCGTAGCGCGCGTAGACCTTGGTGGTGTTCTCGCCGGTGAGCTGGTGTTCGACGAAGCCCAGCCGGGCGGCCGTCGCCACCACCCGGTCGCGCGTGGCGGCCTCGATCTCGACGTAGGGCGGGATGAGCGGCCAGGTGTCGATCTCGATCTCCGCGCCGTCGCAGCGGTAGGACTCGCGCCGGTTCTCCTGATAGGACTTCGGTTCGTAGCCCAGCCGGGACAGAAAGGTCAGCGTCTCGGCGAAGTCGCCGACGGCGGTCTCCCACTCGTGCGTGCCGCCGATGCCGTCATGTTCGATCTTCTTCACCGACAGCGTGGCGACCGTGCCGTTGTCGCGCAGCCGCATCCAGGTGGCGGCGTCGCCTTCCACGATGTCGAACACGTAGCGGCGCTGGGCGGTCTCGCCGATGAACTCGGCGTCGGCCCGTCGCAGCG # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.62, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCACGCGCGGGGTTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCCCGCGCGGGGGTGTTCCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 7 3113703-3114476 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016076.1 Actinoalloteichus fjordicus strain ADI127-7 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 3113703 37 100.0 34 ..................................... CCCCACAGGTACACCCCCCCCTGCACGGGTACGG 3113774 37 100.0 37 ..................................... CACTCCTGGAAGGCGCGGCCGGCCTCTCGCTGGCCCG 3113848 37 100.0 36 ..................................... TCCTTTCGTCGTGCCCCGGCCGGTCCGGCCGGGGCG 3113921 37 100.0 36 ..................................... CGCTGCGACCACCAGCGCCGCCGGTGACGCTGGCCG 3113994 37 100.0 37 ..................................... CAGCGGCTGTGACCGATCACCCCACCGGTGACCACAC 3114068 37 100.0 40 ..................................... CTGGAGCACTGCCGCCACGTGGCTGGCGTAGAACTCGGGG 3114145 37 100.0 37 ..................................... GAGATCCGCGCCGCCTCATCGAGGAGTAGGCCGACGG 3114219 37 100.0 36 ..................................... TCGAGGATGCGGGGGTTGTACTCCCCCGGGTAGGGG 3114292 37 100.0 37 ..................................... CCGACCTCGTGAAGGGCGGTGTCCCCGGAGTCCGTCA 3114366 37 100.0 37 ..................................... CATCGCGTCCGTGCAGTTGCCGGATCTCGGAGTGCGG 3114440 37 97.3 0 ....................T................ | ========== ====== ====== ====== ===================================== ======================================== ================== 11 37 99.8 37 GTGGCACCGGCCCTTCGGGGCCGGTGAGGATCGCAAC # Left flank : ATGGCTGGCGACCTCACGTCACCCTCGCCTACTCCAACGTGAGCGGCCCCGCCGAACCGATCGCAGACCGTCTCGCCGCGCACGGTGCGCACATCGCGGAAGTCACCGTCTCGGCCCTGAGCCTCATCGAACTAAACCGTGATCACCGACAGTACGAATGGACCGACGTCGCGACCGTGGGTCTCACCGGATCACGCAGCGACATGGCCACTGAGTGACTGATGGGACTGAAAGACCCCGTCCGGTCCACTCTGGAGACTGACGCGACCTGCCGAGCTTGCCCGTTCGATGCTGCCGCTCTCGGTACTGTCCGATGACTTCCTACGTTCGCCAGCAGCGAGGGATGAAGGGCTGCTGATCCACTGGCCTTGTCGCTGGCCGCTTAGGGAGGGCAAGCGTCGGGCGACACGCCGTGTCACTCCGAACCGTCTGCCGGGCGTGTCGGTCAACATCCGATAACCTCACGACGTCTCGAACTGCAATGCCCCTGTACAAGCAGG # Right flank : CACCTACTTCGACACCGCCACCGAACCCGTGCCCTGGGCCGATCAGAACAAGCCACGCTGTCGGCGTACGAGTCGCAATGCAGCGCCGCGCACGCCACCGAGTACACGACGACCATCGACATCCGTAAGCTCAGCGACGAGCCAGCGGTCGAGTCGGCGTCGGCACATCGAGATGATCGACTACACAGGGTGATGCATGTCAACCCGGCGGCGCCCTGATTTGCCGAGCTCAGCGCGCCCGGCGCTGTTAACGTGCGCTCGCACATCTGAGAATTCGGAGCGCGCCGCCATGAAGTACACCGTCTCGATCGAGATCGCTCTGCCGAGGGAGCGAGTGGTCCAGCTGCTGGCAGACCCGGCGCATCTGCCGGAGTGGCTGCGGGGCTTGGTGCTGCACGAGCCGCTCAGTGGCACACACGGGCAGGTCGGCACCACGTCGCGAGTCGTGATGCAGATGGGCAAGCAGAAGATGGAGTGCACCGAGACCATCACACGTCGGG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCACCGGCCCTTCGGGGCCGGTGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-17.80,-16.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 8 3123936-3124934 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016076.1 Actinoalloteichus fjordicus strain ADI127-7 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 3123936 37 100.0 36 ..................................... GACACCCTCACCACCGAGATCGACGTCGCCGGTCAG 3124009 37 100.0 37 ..................................... TCCAGAGCCTCGGCGTAGGCTTCCGCGTCCTCAGCGG 3124083 37 100.0 38 ..................................... CAGCTGTTGGGCCAGGTGCCCCCGTCCTCCCAGTCCCG 3124158 37 100.0 36 ..................................... TCGTCGGAGCCCTTTCCTCCGCCGAACCAGCCCCGC 3124231 37 100.0 37 ..................................... GCGGGCCACGGCCATGTCCGACCGGGCACGCAACACG 3124305 37 100.0 35 ..................................... CTGTCCGTGCAGGACCGCGCGGACGCGGTGCAGGT 3124377 37 100.0 38 ..................................... CACGCCGGTCGTCCGCCGATCACCTGATCGGCCGCAGG 3124452 37 100.0 36 ..................................... ACGGTCAACCGGTCTGGAGTGTGGCGGATCTCCGCA 3124525 37 100.0 39 ..................................... GTCGAGTACTCGGTGAACGTGTCGAGGAGGTCCTCCCCA 3124601 37 100.0 38 ..................................... ATGAGCGGCTGCCACGGGCCTTGGCTGGTCAGGTTCGG 3124676 37 100.0 36 ..................................... TCCGTGGTGCCCGAACTCGTTTGTCGGAGGGTGGCG 3124749 37 100.0 38 ..................................... CCCATGTACGCCAAGGACGACCTCCGCCGCACCCCCGA 3124824 37 97.3 37 .....................G............... GGTCTCCCCACGCGATCCGGACGGTCGAGACGACGTC 3124898 37 89.2 0 ................C.........C.....A.C.. | ========== ====== ====== ====== ===================================== ======================================= ================== 14 37 99.0 37 GTGGCACCGGCCCTTCGGGGCCGGTGAGGATCGCAAC # Left flank : GCCCATCGTGCAGACCCGGCTGTTCGCTCGTCATCTGCGAGGCGACGAGCCCGCCTATACCCCGTGGATCGCGAGCTGACGATGGAACTGCTGGTCACCTACGACGTCGACACCACCACGCCGGACGGCGCCCGGCGCCTACGGCGGGTCGCGAAGGTGTGCGAGGCCTACGGGCTTCGGGTGCAGAAGTCGGTGTTCGAGATCGTGTGCTCCGACGTCGACTGGATGATCATGAAGAAGCGCCTGCTCGACGTGATCGACGGCGACCAGGACAGCATCCGGGTCTACCAGATGAACGCGGGGGCACTCGGCAGGGCTCAACACCTCGGCCGCTCGCCCGAGGCGCCGCATGGCGCACCGCTGATCTACTGAGTCCTGGCGCTTGAGGAAGGTGAGCGTCGGGCGACACGCCGTGTCAGTCCGAAGTGCCTTTCGGGCGTGTCGGTCACCACTCGATAACCTCGGGGCGTTTGAGAAGGCAATGCCCCTGTACAAGCAGG # Right flank : CTGCCGCACCTATGTCGGGTGAACGCAGGGGAGTCGTTGTGGCACCGACCCGCCGACGCCGACACTGCCACCCGACCCCGGACCGGCAGTCTCCCGGTCCAAAGACGGCAGGCGGTCGCGCACCCGCCATCTCCGCCTGTTCCGCAGGCAAGCCGGACGCCCGCCGGGAAGTCCGCTTCAGCCCCCGTCGCCGTCCCCATCAGGCTCCTCGGAAGCCCTCAGTATCTTGCTCATGCGCTGCATGACGTCGATCTGCGCCGGGTTGTAGAGATCGGTGATGGCCACGCTGAGCGTCTGTGCTGTGACGTACTTGCCGAGCGGCGTGTCCTGACTCACGTCCAGGAGCCCGGGATGCCGGGCGTCGAGGTCGCTGACGTGGGCGGCCAGTCGCTTGGCCAGCTCGTGGCGAGTCTGGTCGTCGGCATCGGGCGGCAGGTCGGTGAGGTCGTTGTCCGCGGGGTGCGGTTCGGTGGTTCTCAGCAGCTGAGCGTAGGTGTTGA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCACCGGCCCTTCGGGGCCGGTGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-17.80,-16.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 9 3583528-3584081 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016076.1 Actinoalloteichus fjordicus strain ADI127-7 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 3583528 30 96.7 37 A............................. GTCATCGCGTCCAACCTGGTCGGCGGGCTCGCGGACA 3583595 30 100.0 36 .............................. CTCCTGCGCGGATTCGGGAAGCTCAACAGGCAGCTT 3583661 30 100.0 36 .............................. CCCACCGTGACCGTGAGGAGCCCCCGTGCCCGTCCC 3583727 30 100.0 35 .............................. CGGGGTCCCTTACTGTTTGTGCGTGAGCCTCCTCG 3583792 30 100.0 34 .............................. GACGCGCGCGCATGCAACGACGGCCGTCGCACAG 3583856 30 100.0 36 .............................. CCCCTCGCACCCCCGATTCCGGGGTGCGGGGGGCTT 3583922 30 100.0 35 .............................. ACCTGCTATCTCGACCACACGGCCGTCGTCACGCT 3583987 30 100.0 35 .............................. GACGGTGGCACCGCGCGCTCAGTCGCCGAGTACAA 3584052 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 9 30 99.6 36 GTTGCGAACCCTCGTAGGGACTATGAAGAC # Left flank : GGCGAATCGAAGCGCCTGGGGCTCGCCGAGTACTCCGACCAGGGTCGTCCAGCCCTCCCGCACCAGCGGGTCCACGCCGTAGCGAAGCGCCTTCTCCCGGTCCATCGTCAGTCGGTCGAGAGGAGGCACCGGCATGTCGCCCCACGCGGCGGTCCGGCCCACCTCTTCCCCTGCGCACGCAGTCACTTCAGTACCCTCCCGATCGTGCCGCATCTGGGCTTCTTCAGCAGAACCACCACAGCGCTATCAGGGCTTGTGTCCCAGAGGCTAGCGCCGTGAAATTCGTGAACCGGGAGCCATCTGTGTGAAATCACATGAAACCGTGCGGCCATTGCGCGATAGAGTCATCCTCTTCCAAAGGTGAGCAACAGCTAGTCGAGCAGCGAGTGTCAGATCATCAAGATCGCGCCAAATCTCAAGGGTCACCGTTAGCAGCGGGTTGAGCCGGAAGACTGAAAGCAAGAGGCGAACGATCGCCGCTAATCACCCTCCAAGCTGGT # Right flank : CCCGAGAGTAAAGTCGCAGGTCAGCACCTCTGCCACCTTCGCTCTGGAGGCTGATTTTTCAGGGATCCTCCGGTTTGACGTGGAGGCCCGGGGGTTCGCTGAAGATGGGTGGGCCTCGCTGCTGATGGTCATCGACTAGCGAACAGCCCTTCTCCGTCAATCCCGACCTCTTCACAACGCGCCGAACGGCATGCCGGCTTCTTTCTCATCCATACTGCTCCGCTGGCCGTCGAGCCAGACCTGGGCGTACTCGCCCGTGCCGAGTCGCGACCACCGACTCAGTCCTCCTGGAGCCCAGCACAACCAACTCGGATCGGGTGCTCTTCAGGACGGATGTTACGGCTTGGACCCGAGCGCCTCAATCATGCCGAAGAGAGCCGCCCCGGACGCAAATGACACGACCTTGATCAGTTTCACCCCCGCTTCTTGCATGCCTGTCGGCTGCGAACCGGTGTACACCGCCACCCCAACGACGGTCAGTACTGCTCATCGGTTGAAGT # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGAACCCTCGTAGGGACTATGAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.90,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.41 Confidence: LOW] # Array family : NA // Array 10 3593586-3594674 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016076.1 Actinoalloteichus fjordicus strain ADI127-7 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 3593586 30 100.0 38 .............................. CGATGATGCCGTCCTGCGGAAGCAACACCGGGGTGAGG 3593654 30 100.0 36 .............................. CGAACCACTTGTACCTGATCACCGAGGTCGACGCGG 3593720 30 100.0 36 .............................. GAACGTGGCACACGCCCGGCCGCGATCCACGCGGCG 3593786 30 100.0 36 .............................. GATGAGCGTCCTGCCTGGTCGGCGGGCGACCGGGTG 3593852 30 100.0 38 .............................. CTGAGTGCCTGACACGATCTAGCGCATGGACGACTGGG 3593920 30 100.0 37 .............................. TGGAGCCACCTCATGAGGCCGCTGCCGGGCGCGGTGG 3593987 30 100.0 37 .............................. CGCCTTCCAGCTCACGCGACGAGGCGGTGTTCGTGCG 3594054 30 100.0 38 .............................. CCGTCTTCATAGATTGACGGTTGGATGGGCGCGGCGAG 3594122 30 100.0 36 .............................. GGGACATCACCGCCGCGAACTGGGCCACTGTCGAGC 3594188 30 100.0 33 .............................. CTGCCGGCGGTGCTGCTGCCTGGCCTCGGCGCG 3594251 30 100.0 36 .............................. AAGTTGGCGGGCAGCCGCACGACAGAACAGCCCGGG 3594317 30 100.0 36 .............................. ACGAGCACCCCGACGCGATCGAGGCCGATCTGCACC 3594383 30 100.0 35 .............................. GCGGGGACGTCCTCGGGCGGGACGCCCACGGCGCG 3594448 30 100.0 36 .............................. AGGTGCGCCGCGTCCACATGCAGCAGGCGTGCAAGT 3594514 30 100.0 35 .............................. AAGGCGTGGCTGCGGGCGATGTGGGCGTTCGCGGC 3594579 30 100.0 36 .............................. TGCTCCGGCCTGACCGCGTACGTCTCACCGGGGCCG 3594645 30 96.7 0 ............................C. | ========== ====== ====== ====== ============================== ====================================== ================== 17 30 99.8 36 GTCCTCATCTGCCCTAGGAGGGTTCGCAAC # Left flank : TCAAACACCGAACCCTCGGCCGCAACGTCTCCTACGACGAACTCATCTACCTCGACGCCCTCGCGCTCACCCGCACCTGCCTCGAAGGCAGCACCTACGCACCGTTCCGCGTCTGGTGGTGACCATGTACACCATCCTGGTCTACGACACCGCCACCGAACGCAACGCCGCAGTCCTCCGCACCTGCCGAAAATACCTGCGACACCAACAACGCAGCGTCTTCGAAGGCGAACTCAGCACAGCACAGATGCACCGGCTCCGCACCGAACTCGAACAACGCATCGACCGCGCCTACGACCACATCCTCGTCTACACCTTCCCACCCGGAACCGACCCCAGACGTCAATCCTGGGGACGCCCCGACGACCAACCACACGACATCCTCTGACCCCCACATTTCAGCGAAACCCCCGGGCCGGACGTCAAACCTCCGGTCCTCTGCAAAAACACCACCAAAAACCCGACTGGGAACGCCAGTGACCTGCGGCTTTACTCTCGGG # Right flank : CATGTACGGCGCCTACTCGGGTGACGTTCCGGCTGAGATCTTCATTCGCCCTCGAAGCTTCAAACATCCAACGGGAACATCCCTCGAGCGCGAGCCGGCCGAGCCGACCAAGACCCTTGGCCCTGTGAAAACAGGCTGCTCGAACTCAGCTCGCCACGACGCACCCGGCATCATGGCGACTCGCTGATCGTCTTCCAGAATCCGCGAGTTCCCGAACGGCCCGCCTGTGCCGCAACACGCGTTTACCAACCGAGGAACACCGATGCAATCGCCCGCCGCCAGGCGCCCGCTATCCGATGCGCGGATGGCGCCAGCGTGGCGACGGGAACCCGCCGCAGCCCGTGCCGCAACGGCGCAACAAGAAGGAACAGGACCATCTGACCTGCGGCGGAACGAAAACCACCAGGTCGCGAACCAGGTCAACCAACCTTGACACGGTAGAGGTCACAGGTTCAATCCCTGTATCGCCCACCAGTTATATGCACTGGTCAGATGCCCCG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCTGCCCTAGGAGGGTTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.30,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 11 4142416-4141873 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016076.1 Actinoalloteichus fjordicus strain ADI127-7 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4142415 29 100.0 32 ............................. GGCGACGCGGTCGCGTCGTTCACCATCGCCTC 4142354 29 100.0 32 ............................. TCGTCGGCGCAGGGGTCGCGTTTCGGTCGATC 4142293 29 100.0 32 ............................. GGACGGAACCCCCAGTGGTTCGAAAGCGTGTG 4142232 29 100.0 32 ............................. GCGTCCGGGTCCACCCGTGCCCAGTCGGAGAT 4142171 29 100.0 32 ............................. TGCACTTGCCATCAGGGCGAGGCCGAGCGCGA 4142110 29 100.0 32 ............................. TCGGCGAAGGGCGAGGACAAACCCATCAAACA 4142049 29 100.0 32 ............................. TCCCCGCCGAACTGGTCTCCCGTGCCCCGCTG 4141988 29 79.3 0 ..............C.......GC..AGT - Deletion [4141960] 4141959 26 75.9 32 --.G........T.C......T.-..... CCTGCGGAACTGGTGGAGATGATCGCGCAGGC 4141901 29 82.8 0 ........T..C.G......A..T..... | ========== ====== ====== ====== ============================= ================================ ================== 10 29 93.8 29 GTGATCTCCACGCATGTGGAGGTAGGTCG # Left flank : CCGGCTCTACCGGTTGATGCCGAAGATGGTCTTGGACATCCAGCGGCTGCTCGCGCCGGAGGAGATCACCGAGGCCGAGGAACCCGAGGAGGTCGAGCTGGTGCACCTCTGGGACCCGGATCTCGGTGCGGTCGAGGCCGGGCGCAACCACGCCCACGACGTGGACTGGTGAGGCGATGGCGAATCTGATCGTGATCTCGACGACGGCCGTCCCCGACTACGTTCGTGGCTCGCTGAGCCGATTCCTCACCGAGCCCGCGCCGGGCCTCTACGTCGGCAGCGTCTCCGCCCGCGTGCGGGACCTCCTCTGGGAGGCCGTCAGCGCGGCCGTCGGGGACGGGGCTGCGGTCTGTGTCCACCCGGCGGAGAACGAACAGCGGTACATCATCAAGACGGCGGGCGAACGACGACGGCACATCGCGGACTTCGACGGCCTGCAACTCATCGAGTTCCGGGACGAAAACGGTAAATCCGCTTTGTAAAAGCCCAGGTCGCGAAGG # Right flank : TAGTCTTGATCGCATGGGTGCGACGAGGGCCATCACCGACATCCCCGTCATCGCCGTGGTGAGTGGAAAGGGCGGGGTCGGCAAGACCAGCGTCGCCGTCGCCCTGGCCCGCAGGCTCGTCGCCGCCGGGCGGAAGGTCGGGCTGGTGGACGCCGATCTACACGGGCCGGATGTGCCTCGGATGCTCGGGTTGCGGCGGGACGTGCCTGCCAAGTCGTTGACCATCGCCAACTGGGTGGGCGGGCGGAACTCGGGGATCGAGGCGATGGAGGTCGACGGGTTCAAGGTCGCCTCGGTCGGGTTCCTGCTCGCGGGACAGCAGGGATTCGCGGTCGACGCCTCGATCGGCGACATGATGCTGGGCAGGCTGATCCGGGACACGCGCTGGGGTGACGTCGACACGCTCGTCGTCGACCTGCCGCCGGGCACCGGGGACGTGCAGCAGGCGCTGTTGGCGCTGGCGGGTCCGGTGGCGGCGGTGCTGGTGGTGACGCCCGCCG # Questionable array : NO Score: 2.61 # Score Detail : 1:0, 2:0, 3:0, 4:0.69, 5:0, 6:0.25, 7:-0.33, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGATCTCCACGCATGTGGAGGTAGGTCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [17-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 12 4149099-4150648 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016076.1 Actinoalloteichus fjordicus strain ADI127-7 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4149099 29 100.0 32 ............................. GTGCCCCTTTTCGCTGATCACGGCCCTGGTCG 4149160 29 100.0 32 ............................. TCGTGACCGACATCGTGGCAGCGATCGACGCG 4149221 29 100.0 32 ............................. TCACCGGTGGCCGTCGCGGCGGTCCAAGTGCA 4149282 29 100.0 32 ............................. GCGCGGTCGACCGCGCGCGCACTGCCTGGTCA 4149343 29 100.0 32 ............................. TCCGCCGTGGAGTACGACACCGGTCTGACCAC 4149404 29 100.0 32 ............................. TGCCGTGCCCTGTTGGCGGCGTGGTGCAGGGC 4149465 29 100.0 33 ............................. CGGAAACCCGATTCCTCAGTCATCGAAATTCAC 4149527 29 100.0 32 ............................. CAGGCGTCCGAGCTGCTCAAGGCGGCGCACCC 4149588 29 100.0 31 ............................. TGCTGTCCAGCCGCCGACCCGACCCGAGCCT 4149648 29 100.0 32 ............................. CCGGGACATTCTCTGGTGACGACCGTAGGGAG 4149709 29 100.0 32 ............................. CGACATGGGATGGCTCCCTTCCAGCCCCCGGA 4149770 29 100.0 32 ............................. TCCGTTGACCACGTCGCTAACCCCCGCTGGAC 4149831 29 100.0 32 ............................. GGGTGGACCGGCCGTCTGCTTGGCCGCGCTGG 4149892 29 100.0 31 ............................. CGGTGGATCTCGGTCCAGTCGATGCCGACGT 4149952 29 100.0 31 ............................. ACGTTGTGCCGGGTCACGCCCAGCTCGGAGC 4150012 29 100.0 32 ............................. TCCGGCCGCCCGTGCTTCAGCGGACGTATGCC 4150073 29 100.0 32 ............................. TCTCGGATGCCGAGCCTGTCCCATGCGGTGAT 4150134 29 100.0 33 ............................. CGGCTGTATCCGGGGGGGAGGTTGCCTGATCCG 4150196 29 100.0 32 ............................. GCGCCGTTATGCATGGGACAACCGCCACGATC 4150257 29 100.0 31 ............................. TCACGCGGGTCGATCATCATCATCGTGACTC 4150317 29 100.0 31 ............................. CCTGTGGAGAGGGCCGATCCGACGTCGCGCC 4150377 29 100.0 33 ............................. AGACCGGGCGACGGCCCGCACGCGCAGGCGCTC 4150439 29 96.6 32 .................A........... CGAAACCCTGGACGGGTCCGTTTCCGCTGGTC 4150500 27 89.7 32 ...............T--........... ATCCGCCGATGTACTGCTGCCACAGCTCCGGC 4150559 29 100.0 32 ............................. CTGTACGGACTGACGGGCGTGCCGCAGTGGGG 4150620 29 86.2 0 ...........G.C......C.C...... | ========== ====== ====== ====== ============================= ================================= ================== 26 29 98.9 32 GTGCTCTCCACCCGTGTGGAGGTTGGTCG # Left flank : CATCCTGTCGTGAGGCCGAATGCTGGTGGTGCGGAGCTAGGGTGTGGGCCGTCTCCACGGAGGTGGAGGTGGGTCGCTAGCGGCGTGGTCGCTCGACAGTTCTTCACGGACGTGAAGGTGAGGTGTGCAGCCGGGTTACGGCGAAGGCCTTCGTCACCTCAGCCAGCTCTATGAAGCTAGCTGCGTACTCGCTTACCGCATGTAGAGATTACACCCTCAGTGCTGGATCGAACACCAGGGGTCAGAACACGAGATGGCGGACGCTCACCTGCCCGACCCGCTGAGGCGGTGCTTCTGCGACATTGACCGACACCCTTCACGACCAGACGGCCACCGAGAGCGCCATCCCAGCCAACGTATCCGGTGACACCGACATATCGACGGGTGTCCGGGCCTGCGTACTGATCTCTGTCCGTGCCATCTGAGAGGATTCGGCCATGAACCTCCCCCACCGCATCGAAAACGGTAAAACGGCTTCCTAAAACACCAGGTCGCGAAGG # Right flank : GACACACCGCGCTCAGCCCTTCACTCCGCCTTGACCTCCACCAACCCCCGATCCGCATCGAGCACGAACTCCCGATCCCCGATGCGTGCAGTCCCGATCTGCCCCGCCTCGTCGACCGAGTGCCGCAGCAGCACCAGGTCGCCCAGCGGCCAGATGTCCCGCCACGGCGACGGGAGGACGTGGTCCTCGCCTCGCCCGAGGACGAGATGTCCGGAGACCGGAATCGTGTGACGCATGACGGAGATCAGTTCGGCGCGGGAGAGTCGCCCCTGCGCATCCGGCACCGGCAGCGTCTCGCCGTTGGGTCCGCCGAGTCGGAGTGCACCGTCGACTCCCTCATAGCAGGGCAGAACTCGCACCGAGTCGGCATTGAAACGGGTGGCCGCGTGGTCCTCCGGCGGCATGTCCCCTGCGGACAGTTCGGCCAGCCTCAGCAGGCGGGAGGGCTCCGGAATCCGTCGGTTGTGGGCGAACTGTTGTTCCACCATCACGTCCGCGCC # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCACCCGTGTGGAGGTTGGTCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-8.70,-8.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA // Array 13 4153631-4154875 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016076.1 Actinoalloteichus fjordicus strain ADI127-7 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4153631 29 100.0 31 ............................. CGTCCTCGGAATGAAGCTCGGCCAGATAAGC 4153691 29 100.0 32 ............................. CACGCCTACGAGGACCCCTGCCCCGAGGCGTA 4153752 29 100.0 32 ............................. TCGTGGTGATCACGCCCAGCGTGGTCGTGCTG 4153813 29 100.0 32 ............................. AGGTCGCTGTCGAGGTCGAGGGTGACTACGGC 4153874 29 100.0 32 ............................. CCGCCGATCACGCACCGACGACACGCACCGCT 4153935 29 100.0 32 ............................. ATCTGCCGTCGTTTTCTCGCTCACGGTGCGGG 4153996 29 100.0 32 ............................. CCCGGCAAGGAATCGGTCTGCATCATCGGCGA 4154057 29 100.0 32 ............................. ACCTCCCCCAGAGTGGTGTTGACGTGGCCGAT 4154118 29 100.0 32 ............................. GGGAGATGGCGGCGTCGGGCATGATGGCAGGC 4154179 29 96.6 32 ............................C GACCTGGCGGCGGCGGCAGGCCGGCGCGGTCC 4154240 29 100.0 31 ............................. GCGGGACGGGCTCGGGCAGGACACGAGTAGC 4154300 29 100.0 32 ............................. GTCGATCATTGATCGAACTGTTCTCAGTTGGT 4154361 29 100.0 32 ............................. CAACCCGCGCGCCCACCCGAGCCGGTCTTCGC 4154422 29 100.0 32 ............................. GACATCGTCGCCGGGATCTTCGCCAGCACCGC 4154483 29 100.0 31 ............................. TCGCTGCGGACCCGTTGACCAGAGGAGCAAG 4154543 29 100.0 32 ............................. CTGCTTCCCGTCCTCGTCGACGAAGTCTTTCT 4154604 29 100.0 32 ............................. TGACGGTCGTCGGGTCCTCGGGCACTGGCGGT 4154665 29 100.0 32 ............................. ATGCGGCGGCGGGCGTGGTCCGAGCGGGATTT 4154726 29 93.1 31 .........G.A................. AAACCGGGTGCCCGATCATCGCGGTGACCAC 4154786 29 93.1 32 .........G.A................. TCTGTTGCGCAGAAGATTGACACTGATTGCCA 4154847 29 86.2 0 .........G.A............C..G. | ========== ====== ====== ====== ============================= ================================ ================== 21 29 98.5 32 GTGCTCTCCACGGACGTGGAGGTTGGTCG # Left flank : CTCATGGCCCGGCGGTGGATATCCGGCGGGCAGTCCGAGCTGCGCCTGGAAATGAGCCGTCAGTTTCCCGATGTCGTGCAGCGCGGCCCAGAACTCCACCGTCCGCCCGGTATCGGCCACGGACAGACCCAATTCCCCCGCGATCTGCTCGCGGAATCCCGGTGCCACCATGTCGGCCCAGAGCGCCCGCGCCACTGCGGCGGTGTCGAGCAGGTGGCAGATCAGCGGGTACGGCGTGCCGAGCCCGTGCTCCTTCCCCCACAGCACCAGGTCGAGCAGCTCCCGGTGAGCGCCCGCCTCGTTCCCGCCTGCGCCCGCACCGCACGAACCGTCACCATCGGTGCTCACGGCGAGCACCCTAGATGAACCCGCCGACAGTTCTTACGGCCTACCGGAGTCCGAGTTCGGTGTCAGCAGGGTCTGCGAGGATATGCGTCATGAACGCACACCGCTGCGGCGAAAACGGTCAAACGGCCTTCTAAAACCGCAGGTCGCGAAGG # Right flank : GCGACCGGGAGACCGAGAACGTCGACAGCCGTCCTCCACCCATGTGGAGGCCTTCCAGCGCTGCACCACATCCCGCACCACCTGACGGCCGAACACCCGCCGCCCCCGCCAGCCGCCGCATCCTGGCAGAGGAAACGTGAACTCTCTGCGAGAATGCCCCCGTGGAGGACGAGCAGATCGAGGTACGCATCGGCGATCGTGAGCGCCGGAGTGTGGACGCCCGCTTGCGGGCGGCGCTGGACGACGGTGTTCTGACGTTGACCGAGTATGACGAGCGGACGGCGAAATGCTGGGCCGCGCGCACCCGGGAGGAACTGCGGCTGCTCACGCGCGACCTTCCGGAGCCCGCAGCCGAGAACGGCGCCGAGGGCACGACCTCCACGGCGCCGCAGACTGCCCCGCGAACGACTCCCACCAAATCAGACGAGGACGACGAGGACGAGGCGAAACCCGGCATCGTCTCGCGCGTCGTCGGCGGGCTGGTCACCGGCGTCCTGGTG # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCACGGACGTGGAGGTTGGTCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 14 4171273-4170721 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016076.1 Actinoalloteichus fjordicus strain ADI127-7 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ====================================== ================== 4171272 38 100.0 38 ...................................... GCCCCGGTGCTCACCGCCGTGACGAGCGCGCACCTGGG 4171196 38 100.0 36 ...................................... TCCAAGCGGCGCGGGCCGCCGCGGCGGCCGAGGGTG 4171122 38 100.0 34 ...................................... TCGCGTCGGCGACGGCCCGCATCGGCGGCGTCGG 4171050 38 100.0 35 ...................................... GCTGCGGCACCTCGCGGTGGGTGCGGTGATCACTG 4170977 38 100.0 35 ...................................... CGGCCTGGAGGTCCAGCAGGTGTTGACGACCGGCA 4170904 38 100.0 34 ...................................... GCGCCGCCGCGCAACAACGCGACGGCGACCTCGA 4170832 38 94.7 36 ..............T......................G ACGAACTGAGCCGGACGGCGTACCGCGACTATGTCT 4170758 36 86.8 0 ..............T...........C....G.--... | CA [4170731] ========== ====== ====== ====== ====================================== ====================================== ================== 8 38 97.7 36 GTGGCATCGGCCCTCCGGGGCCGATGAGGATCGCAACC # Left flank : GATGGCTCGGTTCGTCTGGCGGACCTTCGGCGCCGTCTTACGCAGGCTGGTGCGACGGTTCAACAGCAAGGAAGCAGCAGGCGGTAACCTCGCCGCGATCGCCCTGGGAACGGTCCGCCCGCCCGCCGGACGCTATTACGCGGCCGTCCGACGCGACGCGCTCACGTGGCTCGAACCCTCGGAACTCGCCCGCGACGAGGAGGCCCGGGACGCCCTGTGGCGGGACAGCGCTCCCTTGGTCGGCCTGCCTGCCTGAGAGCGCCGCCGATACTGGTCGCGAGCGGATCGGCGCGGATCGCCAGCGCCGTCCTTCGCCCTTTCGGTTCGAGCGTGTTGACGTCGAAACGCCCTCGGAGCGCGATGATCCCGCACCACTGAGCTTCGGGAAGGCAAGCGTCGTGCGACACGCCTGACCATTCCGAACCGTTTGCCGGGCGTGTTGATCACCACCAGGTAACCTTGAGGCGTTGAGGAAGGCAATACCCCTGCTGCGGCAGGGT # Right flank : TGCCTCGCTACCCCGCCGTAGCCAGCCCCGTCTGAAACGCGATCACGACGAGTTGTGCCCGGTCCCGCGCGTCCAGCTTCATCATCGCCCGGTTGACATGCGTCTTCGCCGTCAGCGGCGAGACGTGCAGGCGGGCGGCGATCTCGTCGTTGGACAGGCCCGTGGCCACCAGCCCCACGACCTCGCGCTCCCGATTCGTCAACGCCGACAGCCGCTCCGGCTGCGTCGGCTCCGCCACCTGCGGGCCGCTCAGGAACCGTTCGATCAGCCCTCGGGTGGCCTTCGGCGACAGCAGCGCCTCGCCTCGCGCCACCGTCCGGATCGCCGCCAGCAGCTCGCCAGGCCGCACGCCCTTGCCCAGAAACCCGCTCGCCCCGGCCCGCAGCGCCTCGAAGACGTACTCGTCGACCTCGAAGGTCGTCAGCACCAGCACTCGGACCCCGACAAGATCATCGTTCGCGATGATCTCCCGCGTCGCGGCGAGGCCGTCCAGCTCCGGC # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCATCGGCCCTCCGGGGCCGATGAGGATCGCAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-14.70,-16.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 15 4176644-4176311 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016076.1 Actinoalloteichus fjordicus strain ADI127-7 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 4176643 37 100.0 37 ..................................... ACCCTCATGGGCTAACGGGGGTGATGTCGGTCGCCTT 4176569 37 100.0 36 ..................................... CCCTCCTTGTCCTCCCACTGGTTGGTCTTGATCCGT 4176496 37 100.0 38 ..................................... CAGGCCACGTGGCCGACCGGGTCCTGCCACATCTCCGG 4176421 37 100.0 37 ..................................... GCGGTGCGGGCGGTGGCCCAGGGCAGGTCTGTTCGCG 4176347 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 5 37 100.0 37 GTGGCACCGGCCCTTCGGGGCCGGTGAGGATCGCAAC # Left flank : ACGCTAGGTGTGACCCCGGACACCGTCAAGCGGCCGTTCGGTCGCCGCAAACTCGCCCGCCCAACCCAATTCGCCCGCCCGCACCGTCGGCGCGACGCACCGCCGTCTGCCGTATCGCGTCGGGCGATGCCGGGGTTCGGGGGCGGCGACGGTGGCGAACTGCGCACCCTGATCTGTGGGTGACGGGTTGGACTTAGCGGTGATCAGCGCGCGTGGTCTGTGCTCGATCCGGTGCTCTGCGACCTCCTTGCGATCCCGAGGGCGTGGTCACCATAGGACTGCCCGTGCTGGCGTATGCAAGGATGTCATCGTCAGCCGACCGCTTGTCCTGGGGAGTCGGGCTGTGGCTCTCTCGCTGGTATCGGTCATAGGCTCGGCCCGGTTAGGGAGGGCAAGCGTCGTGCGACACGCCTGATCCTTCCGAACCTGCCGACGGGCGTGTTGGTCTCTACCCGATAACCTTGCGATGCTGGGAGACATGACATCCCTGCTGAGGCAGG # Right flank : CCCACCGGACTGCTACTGCGACGCATCTCGGAGGCCTGACGGACGTACGCAGCGCCCCCGCACCAGCGCGGTGCGGGGGCGCTGTCATTCGCGGGGTCAGTACTCCCATTCCCAGCCGTTCCCCGCAGGCCGGATTCCGAACATCGGATCGAACGTCACAACCCCGCTGGCATGCGCCGTGTCGAGCGTGATCCGTGCGTGATAGGTCGTGCCCGACCGCATCCCGCCGATGGGGAACTGGTCTGCGTCGTCCATACACGAGTAGGACTCGATCGACGCAGAGTCACCCTCACCCACGCCGTCTGCGGAGATGATGCCGAAATCGAACGGGGTGATGTTCAACGTCCCGGCCGTCTGGTGGACCTCGACGGTGATGTCCACGACCACGAAATGCCCGCGCGACGGAGGGCTCGCCCACTGCGAGGTACATCCCGGATCGACGGCGGTGCCGGTGACGGTGGCCGTAGCCGTCCCCTGACCGAGGTCGATGGGTTCGCCGA # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCACCGGCCCTTCGGGGCCGGTGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-16.70,-17.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [28.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 16 4206589-4205596 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016076.1 Actinoalloteichus fjordicus strain ADI127-7 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 4206588 37 100.0 37 ..................................... TGTCGTCGGCGGGGGTTGCCAACACGCCGGGGCTGGC 4206514 37 100.0 37 ..................................... CGGGATCTCCACGCCGTCGCCGGCGACGACCAGGCGG 4206440 37 100.0 37 ..................................... GAGGCGCACCGCGATCACCGCCAGCAGTTCGGCGGCG 4206366 37 100.0 38 ..................................... TGATCTGATCTGATCGCAGGCTGACGAAGCCCCGCCGG 4206291 37 100.0 37 ..................................... TGCCCAGACCGGCCCGCCTGGCGGCCGACGGGCTCGA 4206217 37 97.3 36 ..............T...................... GTCCACAGCCGTCACCAGGGCGAGCTGTCCGCACTG 4206144 37 97.3 36 ..............T...................... AAGGCCAGTCGGTCGCGCAGCCGTTGACGAGTGGCG 4206071 37 97.3 36 ..............T...................... CTTCTCGTGACCTCCTCCAGACCGACCGCGAGCTGC 4205998 37 97.3 35 ..............T...................... GACCGCGTGCCGACGGCTCGCGATCTGCGCGGGGA 4205926 37 94.6 34 .......T......T...................... CCCCACCGACACCGCCGACAACATCCCCGCGTGG 4205855 37 94.6 38 ..............T....T................. ACCGAACAGCAGCTGCGGGTGCTGGGCGGCCGAGACAG 4205780 37 100.0 38 ..................................... TGGCCGATCCACGAGGCGAAGCCCCTCGATCCAGGGCG 4205705 37 94.6 38 ..............T...A.................. TCCATCTTCGACAGCGTCGAATTACGTAGACGGATGAA 4205630 35 83.8 0 ...C..........T...........--....A...G | ========== ====== ====== ====== ===================================== ====================================== ================== 14 37 96.9 37 GTGGCACCGGCCCTCCGGGGCCGGTGAGGATCGCAAC # Left flank : CCAGGACTGCCGCGATGGTGAGCGGGACCACCCGGACCGGCTCCTCCGGGGCGGGCGTCGGTGCGGCGCACGACGTCGGCGACCTCAGGAGCAGATCGGCGGTTCTCCCGGCGTTTCCGCCGGTGGGCTGGTCGGTGGTGGCGGACACGGGGCACTCCAGGACGAGAGTCGGCTGCGCGGACTATCCCGGGAGGCTAGGTCGTCACCGGTCGGCCGGGCAGGGTGTCTCACTGGATGGACGTCGCCGTGCCTGCCTGCTCGACGGGCAGACACATTCGTCCCGGCCGTCGTGAGCATGTGTCGGACCGGCCGTCTCGTAGAGTGGGCGGTCGGGCTTGTACCGCTCCGGCTGATCCGGTGACGCCAACCGTCGCCGAATCGCTTGGGGAGGGCAAGCGTCATGCGACACGCCTGGCGACTCCGAACTCAAATTCGGGCGTGTTGGTCACTGCTCGGTAACCTTGGCGCGTTGAGGAAGGCAATACCCCTGCTGCGGCAGG # Right flank : GCCGCTCATCAACCGCGACCCGTCGCGTTCAGGCGAGCACGGTCCACTGGCCTCTGGTGCGGTGGGTGAGCGTCCAGGCTCGCGTCTCGGCGACGGCGGCGGTCGCGGAGACGACGTGGTCACCGATCTGTCGGGCGATCTGCTGGTCGCCTGCCGTGAAGCGGACCGTGACTCGGGCTTCGCCCGCCACGACGTCCACTGCCGAGGCCTCGACGGTGGCGAACTCGGCTGCGGCCTCGGCGGCGGTCGGCACGACTCGCTCCGGTGCGACACCGGGTCGCAGCATCCCGATCGTCATCGTCACGCGGAAAGATGGCATGGCCCGGCAGAGTACGGCAGCCTCGCTCCCGTCCTGCCGCACGAGGTCTTCTCCGGCCGGGCGGCTTGGGCTCACCTTGTATTGCGCGGTGTGGTGACTCGATTCCTGGTCTGAGATCGGCAGCGCACCCGGCTCGCGGTGACCAGCCCGGTCATCGGCCGCACCTCGGAGCGTCCTCGTC # Questionable array : NO Score: 2.80 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCACCGGCCCTCCGGGGCCGGTGAGGATCGCAAC # Alternate repeat : GTGGCACCGGCCCTTCGGGGCCGGTGAGGATCGCAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-16.70,-18.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 17 4282076-4282287 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016076.1 Actinoalloteichus fjordicus strain ADI127-7 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4282076 29 93.1 32 .C............G.............. ACCATCGCGGAGCGGTCGTCGCAGGTCCGGGT 4282137 29 100.0 32 ............................. GGCAAGGACGCGCAGCTGTCGTGCAACCGTGC 4282198 29 96.6 32 ............................A CCGCCGAGGCTGATCTCCGACAGCAGAGTTGC 4282259 29 93.1 0 .....................A...C... | ========== ====== ====== ====== ============================= ================================ ================== 4 29 95.7 32 GTAAGCCCCGCGCAAGCGGGGGTGGTCCG # Left flank : GCGGCGCGGGACCGCTGCGACAACGGATGCGACGGCGGGTCGCGGGCGGCGGCCGGGTGCTGTTCGTCGGCGACGCGGCAGGCTATGTGGACGCGCTGACCGGTGAGGGCATCACCTTGGCCATGGCGGGCGCGGCGGCACTGGTGGACAGCCTGCGCCGGGATCGGCCGCAGGAGTACGAACGCGCCTGGCTGCGCGCGACCCGACGCCACCGGCTGCTGACGGAGTGTCTGGTGCTGGCCAGGGCGAACCCGCTCACCGCAGGCCGGATCGTCCCGGCCGCCGAGCGCCTGCCCTCGGTGTTCGGCGCCGTCGTCAACGCACTGGCGTGAGCGAGGTGGCGGGCCGTAGGCGCAGGGTCGAGCGGAACGTGACCGCAGTGTTGTCCACAGAGGACGAATCGATCGGTGCGTTCCCTGCACAGAAGTCAGGTCGCGAGTCCGCCTACCATGGAGCATCACAGATGAATAACGCCCGAGCTGCGCCGCAGGTGGCGAAGG # Right flank : GATGTCAGCCGGGATGGTGGGCAGTTCGTCGGGGTGGGCCGCACCAGGAGGCAGAGGACTTCGACCAACTCACTCCGGCAAGGTCAAGAGCCTTCGCAAGCCGGAACGCCCCGCCCGCCCGTCGGCGCCCCGGCGAAGCAGGTCTCCGGCACGCGGCCGAGATGGGCCGGACCACCAACGGACGGCGTCGGGCTTCTCTGCCCGGCCAGCCTGCCCCGGCGGTTCGGCGTTCACCAGCGCAGCAGCACGAGTTCCGCGCAGAAGCCGGGGCCCATCGCGAGCAGCAGGCCCGGTGTCCCGGCGGGCGGGCGGGGTTGGGCGAGGGTTCTTCGCAGCACGTCGAGGACCGAGGCCGAGGAGAGGTTGCCCAGGGCCGACAGCGACTCCCGGGTGTGCGCCAGCGCGGTGGCGGGCAGTGCGAGCGAATCGGTGACGGCGTCGATGACCTTCGGCCCGCCCGGATGGCAGATCCACGTCCCGACGTCCTCGGCGACCAGGCC # Questionable array : NO Score: 3.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAGCCCCGCGCAAGCGGGGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCTCCCCGCGCGAGCGGGGGTGGTCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.20,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 18 4939116-4938844 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016076.1 Actinoalloteichus fjordicus strain ADI127-7 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4939115 28 96.4 33 ....G....................... CTAGCACAGAGGGTGAGTAGATCCCAAACCTCA 4939054 28 100.0 33 ............................ CAGGCCGCCGTAGGCGATCTCCCTGCCGTCGTC 4938993 28 100.0 33 ............................ GTCGGCCTGGGTGGTCGAGGCGGTCAGCGTCTG 4938932 28 96.4 33 ........................T... AGACACCAAGCTCTCGAACCTTGATCGAGGGCA 4938871 28 89.3 0 ...C.................C..T... | ========== ====== ====== ====== ============================ ================================= ================== 5 28 96.4 33 GTCTTCCCCGCGTACGCGGGGGTGCTCC # Left flank : CCTGCTGGCCGCCCGCCGCGCCCTGCGCCCGGCGTCGCTCGATCCCGCGAACGCCGCCCCCGTCGAGTCCTGGCGGGTCGCGGTCCTGACCTGCCTCGCCGTGACCTGGCTGAACCCCCACACCTACCTGGACACGGTGCTGCTGCTCGGCACCGTCGGCAACAGCTGGCAGGACCAGCGCTGGTGGTTCGGCGCGGGCGCGATGGCGGGCAGCGTGCTGTGGTTCGTCGCCCTCGGCTTCGGTGCGGGCCTGCTGCGCGGCTTCTTCACCAGGCCTGCGTCGTGGCGGGTGCTCGACTCCCTGGTGGCGGCGACGATGCTGACGCTGGGCGTGCTGCTGATCGTGCGGGGCGGCTGAGCTGAATCCGGCGGCTCTCTGTTCGTCCGCTTGCGCGGTCGTGGGCGGACGACCGCGAGATCGATCTGCTGATCGCGGCCTAGACTGATCGCAAGTGAAGGAGAATTCAGTTACCGGCCAGTAGAATGCCTGGTCAGGAAGC # Right flank : GGTTGTGCTGCTGCCGGGCTCGACAAAGCAGCGTCCGTGTTTTCGTTCTGTGCTGACTGCCCAGTCGATCCCGGCATGTTCCCGACCCGCTGACCTCGAGTCGCCGACGTCGAATTCGTGCCCCGGCCTCGCGCAGATGTCGGCGGGGACCGCGTCCGCGCGCCGTTCGGAGAACGTGTGGCAGGCCGTTCTCCCGAGAATCCCAGCCGGGAATCCCAGCCAGGCACCGCAAAGACCCCGCCAGCCTGTTCTGGGACTGCCACACCGTCGTCGATCCTCGCCCGGTCGCGTTCTGCCGAGAACGGACTCGGACGGGCACTGTGAATCCGGTGTATAACTCAGGTGTATAGTCAGCTCGACGCTAGTTCGGAACCGTCGGGGGCGGCGAAGGCATCCCCGGCGAAACACCGCGGTGGCCTGCGGTTCTCTCTGGCGGCCGAACGGCCGATGCCGTCCACGGTTCGATCACGGCGGCGGCATCGGCGAAAGATCGTCTTTCC # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGTACGCGGGGGTGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,1] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 19 5342864-5342533 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016076.1 Actinoalloteichus fjordicus strain ADI127-7 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5342863 29 96.6 32 ............................G TTGGCGTAGATCCGGTGGGCCAGGGCGCTGTC 5342802 29 100.0 32 ............................. GTCAGGTCGTAGAAGCCGTTCGCCTGCGGCCC 5342741 29 100.0 32 ............................. ATTAGGAAGCTGCTCAGCGGCAAGCGCGACGG 5342680 28 93.1 32 .................-..........T CAGGAAGGAAGCTGCGGTGGCTGGCATGTGCC 5342620 29 96.6 32 ............................G CAGAACGCGGGGAGCTGCCCCGCCGGTAGTCC 5342559 27 89.7 0 ...........-.-...A........... | ========== ====== ====== ====== ============================= ================================ ================== 6 29 96.0 32 GTTCTCCCCGCGCACGCGGGGCTGTTCCC # Left flank : GCAGCAGGCTGGTCTCCTCCGGGGCGGAGGCAGACGCACCCGACGCTTACCACTGGACTCATGTCGCGTCGGGCTCCTGGGCCAGGGCGGATCTCGACGCCGACGGCGTGACCATTCGCCAGGCGGGACCGAGGCGACTCTGGACCGAACTCGTGCCCATCCTCGATGCGTGGCATGCGGCAGGCCGCCCCGGTATAGACCGATTCGGGCTGACTGTCACAGCGGGTGGGCGCCACACACTCTGGCTGGACGAACCCGCGAATGTCCTCCGCGATCTCGGCTGATCAACTGGGCCGACGCGCACGGGCCGACTTTGTAGCCTGTGTGTTCCCCGTGATCTTGCGCCGGTGGCTCCGGGCGATCGATGCAAGAGCGAGGGTCGCGAGGAAGGCCGTCGGCGATATTTCGGTGTCAGCGCCGCCGTTCCGGATGGCCCGTTAGACTCGATCCGAGTGAACGAGAATCCTGTTACTCGCGAGTAGAGTCCCAGGTCAGCAAGT # Right flank : GCTGCGAAGGCCACCGGGATTGTTGAAGAGGATCATCCGCACAGCCAAGGCAACCCCGACCCGCCGGCTACCCCCAGCGGCGCGAATCAGGCCGTGCCGGCCAGGGAGCGGCCGACTCGCCCGGGCGAACCCCACGGCAGCAGCGGAACATCCGCCCTCCGGATCGCCCCGGCCTCAGATTCCGCCCGCGATGCCCATCGCGACCGACGTCGCCGAGCGTTCCATCTCCTCGCGGGCCCGGCGCATCGCGGCGACGATGTCGGCCTCGCGTGCGGGAGTCAGTCGGGCCAGGGGGACCGAGCAGCTGATGGCGTCCAGCGGCGGGGTCGCGTAGCGCATCGGCAGCGCGACGCAGTGCAGGCCGACGCTGTTCTCCTGCTGGTCGACGGCGTAGCCGCGTTCCCTCGTGTGGGCCAGGTCCTCGACCAGCGCCTCCCGGTCGGTCAGGGTGTGCGGGGTCAGCGCGGCCAGGGTCGGCGGCAGATGATTCGCCAGCTCCT # Questionable array : NO Score: 5.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCCCCGCGCACGCGGGGCTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGCTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 20 5793240-5793632 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016076.1 Actinoalloteichus fjordicus strain ADI127-7 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5793240 29 100.0 32 ............................. ATGTGGTGGAACGGCGTGATGAGGGGCACGGC 5793301 29 96.6 33 ............................A AGGGGGCGGCGGCGATGGTCGATGCACTCCCAG 5793363 29 100.0 32 ............................. ACGGTGAGCCCGCGCTGCCCGCCATCGCCGAT 5793424 29 96.6 32 A............................ GGCAGCAGGCCCTCCGGAGCACCGTCGACCGG 5793485 29 93.1 32 A........................C... CGCTGCCGCATCCGAAAGTCCGGGCGGGCGAC 5793546 29 82.8 30 A.......G.........A...C.....T GCCATCCCTGTTCCCGCTGTGGACACTCGG 5793605 28 72.4 0 .G.....T..T.A....-C.....A...G | ========== ====== ====== ====== ============================= ================================= ================== 7 29 91.6 32 GTCTTCCCCGCGTACGCGGGGGTGTTCCC # Left flank : GACCTTCGACGCCGCGCGGGCCGTCGACATCGGACTGCTGAACTCGGCCGTGGCCGCCGAGGATCTCGACGCCGAGGTCAGCCGGATGACGCGCATGCTGGCGGCGGGCGGACCGGCGGCGCTGGCCGCGACCAAGGCGATGCTGCGCAGCCCTCGATCGGGCCGGCTCACGGAGGAGTTCGCCGACATGCTGGCGCTCTCGGCACGCCACTTCGCAGGAGCGGAGGGGCAGGAGGGCATGCGGGCCTTCGCCGAGAAGCGCCCGCCGTCCTGGGTGCCCGCCGACGGGCCGCCGGGCTCGGCGGCCGGGCGAGGCTGAGCGCCCCGGCGGGACGGCGGCCGGTCGACTTCCCCGATCGGCGCGAGACCGCCGGGATGCAGGCGGCAAGCGAGACGTCGTCTATCAGTCGCGTTCGTCCCGGCAATGTGATCGACATCGAGACTCATCCGAAGTGAACGAGAATCCGGTTACCCGCCGGTAGACCAGCAGGTCAGCAAGG # Right flank : GACAGGCCGATCCAACGCGAGCCCCTGACCGGCGCGCACGCACCGTGTCGCACCCAGGAACACCGATCCCGTCGGCTACGCCGATACCCGCCCGCCCGGCTCGCCGCCACCGCCCGCCCGCATGACTCGGCAGGCCCGCTCGGTCTGTCGAACCGCCGTCGAATCGGCCGTGTCTCCTACACTGGGTGTCCTAGCGATGACGGAGGGTGGGGTGGCGATGCGTCAGTCGAGGGATCAGCCGGAGCAGGCCGGGGTCGTCCTCCCGGTCGATCCGTCCGAGACACCGGGGCCGTCGGGCGCCGCCGACCCGTCCGACCCGGCCTACGAGCGGGCGTTCGCCGCCTTCCTCGCACACACCGATCAGAAGCGTCAGATGTGGGCGCATCTGGAGTCGATCGTCGCCGATCTGCCGCGTCACGACGTGCTGATCGACGCAGGGGCAGGCGAGGGCGGCACAACGGCGTGGCTGAGCGGCTCGTTCCGGCGGACCATCGCCGTCG # Questionable array : NO Score: 5.40 # Score Detail : 1:0, 2:3, 3:0, 4:0.58, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGTACGCGGGGGTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGTTCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.70,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //