Array 1 9748-9389 **** Predicted by CRISPRDetect 2.4 *** >NZ_NUFW01000032.1 Bacillus thuringiensis strain AFS057244 AFS057244_104_C6_Contig32_140523, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 9747 31 100.0 35 ............................... CAGTAAACACTTGAGTAATACTAATCGGGTCTGGC 9681 31 96.8 34 ..............................G TAGGTACTAAACTTTCATTCATTTGCTACACCTC 9616 31 100.0 36 ............................... GGCAAAGAAAAACCATAAGAAAGCTGTAGCAAGCGT 9549 31 100.0 34 ............................... GTATATTCATCCACTATAGTTAGTGAAATAAAAC 9484 31 100.0 34 ............................... GATAACCCAAAAGCACGCTGTCCATTAAATTGGA 9419 31 93.5 0 .................AC............ | ========== ====== ====== ====== =============================== ==================================== ================== 6 31 98.4 35 GTTGAACAGAAACATAAGATGTATTTAAACT # Left flank : GAAATTCTTTTATTCCATTTAATCTAAAGGAGAAAAAATAATGAAAAATCAAATGAATGCTAATTATGCGTTTGTTTTTTATGATGTAAATGAGAAACGAGTGACGAAAGTTTTTAAAATCTGTAAAAAATATTTAAATCATTATCAAAAATCTACTTTTAGGGGGGAGATTACTCCCTCAAATCTATTAAAAATGGAAAAGGAAATTAGGAATATTATAAACGAGGGGGAAGACTTCGTTACTATTATCAAAATGCTAAATGAATATAGCTTTGATGAGATTGAAATAGGGTATAGAAATAATAACGATCTCCTATTTTTGTGAATTTACCAAGTGAAATGATAGTGGGAATCTAATAAACTTTGTTAAGTCAAGATTTATACTATTTCTTTTTGAGAATTTTATTTTTTTATGAACTGCTGGTAAAAAAATCACTAAACTTATATGCAGTATAGTATTATATAAAATATGAAGGTAATAAAAAGTTGATTTAATCGGT # Right flank : TTTGGTCTATTGATTTTACCGTAAGTACGTAACTTGTTGAACAAAAGTCTTAAATTAGAATTGATTTCGAGTAACTCAATAGATAAGCTAAAGGCAAATTTTTAAAGAGAGAAGTTTTTTCATAGAAAGGGGAATTAAGAGTAGGAAAATCTATGCTCCTGCAAAGTATTTTGAAACAGGAACGAAGTTGATTTCGTTTTAATAATAATCTTGTCTCTTTTACTTACTATCGTGGATAAATCTGCATGACATGTACTATAGTTGATGTTATAATATGTGTAGAAGTATTATAATAATAGTTTTTGCATAAACTAAAGAAGACGAAGTGCTGGTAACACTTCGTCATATGTAACTGCTACCGCAAGGTGGTTGGTTACTAAAAATTTAGTTATTTTTTATTGAACCACCAAGTACGTTTGCGGCGTTGGGTGGTTCTTTTCGTTTTTCGTCGCTTTTTTTGTCTTTTTTTCCAAAACGTTGATAGGTATTTTCCTATATGT # Questionable array : NO Score: 3.18 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAGAAACATAAGATGTATTTAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:74.19%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 19869-18923 **** Predicted by CRISPRDetect 2.4 *** >NZ_NUFW01000032.1 Bacillus thuringiensis strain AFS057244 AFS057244_104_C6_Contig32_140523, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 19868 30 93.3 36 ...........G....T............. ATTTCATACGTTACTTTAGGCATACAAGCTTTTAGT 19802 30 93.3 33 .......C.A.................... GAAACTAAGCCAGAGACTAAACCAGAGACTAAG 19739 30 93.3 35 .......C.A.................... TATAATGTGCCGATCGGAATTTTAGCGCCTTTGGA 19674 30 96.7 35 ................T............. AAGAAAAACAAATCACTAGAGGCAGATGTTATTAC 19609 30 100.0 35 .............................. GTTTTTAGAATGGGGCAGAACTAATCGGGAAGCCT 19544 30 96.7 35 ................T............. TATCAGGGTGTGATTTAATTTCAATTAGCTTTCTT 19479 30 100.0 36 .............................. AATGTATACGGGGAAGTTTTAGGGTGTGATGTATTA 19413 30 100.0 35 .............................. ATTAACGCATTCATTAATGATGACCACCTCTGAAT 19348 30 100.0 36 .............................. CACCAATCACTGTTCCATTTAGCTTGTAAAGTCGCA 19282 30 100.0 36 .............................. TTAGTTTCAACAAACTTCTGAATTTCTGCTTTCTGT 19216 30 100.0 35 .............................. TCAGGATCAAACATAACGTTATATGTTTCAGTAGA 19151 30 100.0 36 .............................. TTGTAGGTATTATGGAAGGTAATCTCTGTAGGATTC 19085 30 100.0 37 .............................. TCGTGTATGTAATCACCATTAATATCGTGGTACTCTT 19018 30 100.0 36 .............................. TACAAATCTTATCATAACGTATGATTTAAAGAATTT 18952 30 80.0 0 A.....T.GA.............A.....A | ========== ====== ====== ====== ============================== ===================================== ================== 15 30 96.9 36 GTTGAACAATAACATAAGATGTATTTAAAC # Left flank : ACAATAATATATCCATCATAAACTAGTAGCTGAATGGATAAACCAAAGGCACATCCCTTAATGGGATGTGCCTTTTTTTCGTAGAAAGGAGAAGTAGAAATGGATAAAAAGAAAAAACAACGTGTAAGATGTGCAATTTTTATAGGGGTTGTCGTAATGATTGTATCTTTGTATATTGGAAGTGAATTGCAGGATCGGAATGGGAGAAGTTATGCTCCTGCAAAGTATTTCGAGACTGGAACAAAATTAGTTTCATTTTAATTTTTTACATATTTTCATCGAACAATATGGGTTAATAAGGAATTTGACGAACGTTTTACCAGATTATTTAACAACCTAATGTATTAGTGATAACATGTAAATGTAGATAAAGTAAGGAATTTCTGTATGAATTCTAAGTTAATGAGGTTTATATCAATTAGATGGTAAAAAACTTATAAACCCCCGATTTCTATAGTATAATAGTGGATGCAGGAAATAAAGAGCCAGTATTACTTGGT # Right flank : ACTAAAAAATGTTATTGGTTTAGGAAGTAATCTGGTTAAATAATAAAGTAGAAAGTATTATAATTTCGAAATAAAAAGCACACTCTTGATTTGAACTACCCCCTATAAAATAGGCAGTTTAATAAGAGTTGTGCTTTTTTATTTAAAACGGAAATATAAGGTGGGGAGGATAGAGTGCTGAATGAGCTCAGTATAATTTAATTGTTTACATTTTTGCAACACAAATAAATCGTAATATTAATTATAATATGATATCCTGTTTTTAGGAGGTGCTAAAATTTGAATTTTGAGTTAATAATTACAACTTTATTGAAAGAAGATCTTCATTATGAGGATAGTTTGCAAATAATTGGTAGTTTCATCAACAAAGCGATGCTTCAAAGTGAAAAATTAAAAGCCTTGCATGAAAGAAAAGGTTATAAAAATTATGTTTTTAGCAATTTTTATCCATTTGAAAGAGATAAAATATACAAAAGTGGCCGAGTGTATGTATTTCGATT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACATAAGATGTATTTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //