Array 1 6-1413 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADPHL010000037.1 Pseudomonas aeruginosa strain CCBH28850 37, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 6 28 100.0 32 ............................ TATTTGGGAGTACATGCCGCCCAGGCTGGGCT 66 28 100.0 32 ............................ TATCAGATAATCCGCGTCTTCAGCACTTAGTC 126 28 100.0 32 ............................ AGGTTGCCGGAGTCTGCCGAACAGTTCTGGCC 186 28 100.0 32 ............................ TCGATCCTGGGGCCGTTGTGGCCTCGCATAAT 246 28 100.0 32 ............................ AAGGTTCGCCAATGTTCTACGACTGGATATCC 306 28 100.0 32 ............................ AGGAGCTGCAACTTCTTCCGCCGCCGCTTGCT 366 28 100.0 32 ............................ TGGAGCTTCGCAAGCCGCGTGTGCCGGACTTG 426 28 100.0 32 ............................ GTAAGGTGGTGCCGTGTAGCAGTGCTCACCGC 486 28 100.0 32 ............................ TATGATCATGCCCCGTCCTCCGGCTCCAATAC 546 28 100.0 32 ............................ TGAAGGCCAACCCGCAAGTCAGCAAGGGCATC 606 28 100.0 32 ............................ AGGTTCGTGGCGGACCGGAAAGACCTCAACCG 666 28 100.0 32 ............................ CTGGACGCAAGCAAGATCGTAGGGCGCTGCCC 726 28 100.0 32 ............................ ACCACCAAGATGGTCCAGGCCGTGCGTTCGAT 786 28 100.0 32 ............................ GGCCAACCAGATCGTCTACACCGCCAACGTGA 846 28 100.0 32 ............................ TTGATGGGTTCGTACTCAGGCCCGGAAAACTC 906 28 100.0 32 ............................ TTCCACCCCGAGCAGTTCGATGTGCTCGAGGC 966 28 100.0 32 ............................ ATCAAGGTCAACCTGGGCTCCGGCGCCGGCGG 1026 28 100.0 32 ............................ AGGTCTTCGAACTCGAACAGCTTCGCGAACTG 1086 28 100.0 32 ............................ AATGCGTGTCGAGCGTTGGTGCTGGGATGCCG 1146 28 100.0 32 ............................ AACCAGCGTGTCGACGCCGAGGCCCAGGCACG 1206 28 100.0 32 ............................ CTCGATGACGCATATCGCGAGGCGCTGGCCAA 1266 28 100.0 32 ............................ TGTGTACCCCTGCGCGTGGAGCGCGGGGCGAC 1326 28 100.0 32 ............................ GTCATGGGCGAGCTCTACGCCAACCCGCAAGC 1386 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 24 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : GGCTAG # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGTTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAACAGCTTGAGCAGCAAACATGAAGCCCGCTCGAACGTCCCGTAGGGCGAATACCGCCACAGGCGGTATCCGCCGATGCCCTGGAGAGCCGGCGGATAACCGCAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [3.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 6-1874 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADPHL010000049.1 Pseudomonas aeruginosa strain CCBH28850 49, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 6 28 100.0 32 ............................ ACTAAAAGACTCAGAAATCGTGCACGCCTTCC 66 28 100.0 32 ............................ TGCAGACGATCAAGCCGGGTGCATCGAGTGAG 126 28 100.0 32 ............................ AGGCGATGGCTGAAGTTCCGGCTGATGCTACT 186 28 100.0 32 ............................ TATGCCAGCGGCAACAGCACGCGAGGCTTGAT 246 28 100.0 32 ............................ CGCAGTAGTACCCCGATCAGTAACGGCATCAG 306 28 100.0 32 ............................ AAGGACTACGTGTTCAGCAGTCTCGGCGGCGT 366 28 100.0 32 ............................ AGGGGGACGGCCTGTCGGCCAGTCAGTACCGG 426 28 100.0 32 ............................ TCTGGGAAACTGGTAATTCACATAGAGTGAAA 486 28 100.0 32 ............................ TCGGTCGGGCTACGCCTAACGTAACGTCTGCA 546 28 100.0 32 ............................ TCCAGGCTGCTGATGGCGTGTTCGAGGAAGGC 606 28 100.0 32 ............................ TGGATGTTGGTGGCGCCGTCCAGGGTGTAGGC 666 28 100.0 32 ............................ TGCGAGTCCAGAACCAGGTCGATGCCGACGGT 726 28 100.0 32 ............................ TCTCCGAGAAAATCATGACCAGCAGACGACGA 786 28 100.0 32 ............................ GGCACCTTCAACAAGCAGCTCGCCGCGCTGAA 846 28 100.0 32 ............................ TTGTCGTAGTAGGTGCTGACGCCACGGACCTT 906 28 100.0 32 ............................ TCGGGCCATATCGTCGACGCCGACACCCGCAT 966 28 100.0 32 ............................ TGGCGTAGGCGACGAGACTGTCCAATGGCCGC 1026 28 100.0 32 ............................ TCCATGTCCATGAACAACTCGGCCTGAGCCTG 1086 28 100.0 32 ............................ TGCCGCAGCGCCTGGCCCAGCCCGCTATGGTG 1146 28 100.0 32 ............................ ACAGGTCACAATGCGAACTGAACATCACACTC 1206 28 100.0 32 ............................ GGGACGAACATGCGCCGGAGATCGCAGCCACT 1266 28 100.0 32 ............................ GAACGGATCATCGGGTACCTCTACGAAACCTG 1326 28 100.0 32 ............................ TGGGCGATCGAGCACGGCATCACGCGCGAGAC 1386 28 100.0 33 ............................ AACACAGATCGGCGTGCCCGTGCGAAGAATGCC 1447 28 100.0 32 ............................ TGATTGGTACCCTGATTACTGGTTACCTGATT 1507 28 100.0 32 ............................ TACGTGCGGTTCTGCGCCGCGCCGGATGACGA 1567 28 100.0 32 ............................ TTGCAGTTCGGGTCTTTCGGGCCTGGCATGTC 1627 28 100.0 32 ............................ AGCCTGCCGGCCCAGGACATGCAAAACCAGGC 1687 28 100.0 32 ............................ TTTGCCTGTGCTACGCCCAGGCTGCGAGTCAG 1747 28 85.7 8 ...................C..GT.G.. CCGCACGT TTCC [1769] Deletion [1783] 1787 28 100.0 32 ............................ ATGTAGGCCGACTGCATGTTGGTCTGGTAGAT 1847 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 32 28 99.6 31 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : AGCTAG # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGGTCGCTGCCGTCTAGGCAGAACCACCCTCTCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTTGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [5.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 12465-10399 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADPHL010000049.1 Pseudomonas aeruginosa strain CCBH28850 49, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 12464 28 100.0 32 ............................ TCGCAGATGGGGGCAAGTTCTCGTTCGACAAC 12404 28 100.0 32 ............................ TATCAGATAATCCGCGTCTTCAGCACTTAGTC 12344 28 100.0 32 ............................ ACGGCGTTACGTTACCTGTGGCGGCCGCAGGC 12284 28 100.0 32 ............................ AGGTCCTGGGGCTTCTGCAAGTTGATGTGTGT 12224 28 100.0 32 ............................ GCCTGGACAACCTCTACGGCCTGACCACGCTC 12164 28 100.0 32 ............................ TGACCACGCTCGCGGACAACATGGCCGTCATC 12104 28 100.0 32 ............................ TTCCATGCTGAGGGTAGCTACAGCACGAAGTT 12044 28 100.0 32 ............................ AAGTCCCAGGGCCAGTTCAAGCACTCTGGGAA 11984 28 100.0 32 ............................ TGCCCGGGTTGCCCGGGGCTCTCCACAGAAAG 11924 28 100.0 32 ............................ ACGCAATGTGGTTAAAGCAGTCATCGAGTTCG 11864 28 100.0 32 ............................ AGCACAGCGCCTCGACGGTGTCGTTCTGGTGG 11804 28 100.0 32 ............................ TACGAGCAACACGCCAACTGCACCGAGGCCAG 11744 28 100.0 32 ............................ ACCAGGGCGCAGACGAAAGCAGAGAAGGCCAG 11684 28 100.0 32 ............................ TATGGGTCGGAGGAGGCTTCGTCATGCCTGAT 11624 28 100.0 32 ............................ ACACGAACTCGCCTGGATAGAAGACATGGCAT 11564 28 100.0 32 ............................ TTGATCAGTCTCAAGGTGTGAGATTCCGCCCC 11504 28 100.0 32 ............................ ATGTGGTAGTCGGTGATAACGAAGCAGTTCAG 11444 28 100.0 32 ............................ TGACTTGGGCGGCCCACGAGGCATGGTTGAAT 11384 28 96.4 32 ................A........... AACATCGACGGGTCGAACTGCTCCGGCACCTG 11324 28 100.0 32 ............................ TGGAATGACCGGGCCGTCGCTGAACAGTACTC 11264 28 100.0 32 ............................ AGCCGATGGCCCGCAGTAGTACCCCGATTAGT 11204 28 100.0 32 ............................ TCCTAGTTCTTCGCCCAGCCGGAAACCGAGGC 11144 28 100.0 32 ............................ TGGACGGCCGCAAGACAGTCACGCGGCGAGTG 11084 28 100.0 32 ............................ TTGTCCGTGCGCGGCGCCTTGGGCAGAGTGAA 11024 28 100.0 32 ............................ AAGACGAGTACCTGAAAGACACCACCGGCAAC 10964 28 100.0 32 ............................ ACGATGGCCGGGTGATCGGTATCCCTGATCAC 10904 28 100.0 32 ............................ ATCGCCGAGCTGGTGGAGCACTTCCAGAGCCC 10844 28 100.0 32 ............................ TGGCCGTCCCAGGCCTCTTGCGGTCTAGCCTC 10784 28 100.0 32 ............................ ACAACATCAATCGCCTGATGCTGGGGCACCTG 10724 28 100.0 32 ............................ AGCTTCGGCACCCTGATGCGCGCCGTCGAGGG 10664 28 100.0 32 ............................ AATGCGGTCCTGCGCATCCGAACTGGTAAGTG 10604 28 100.0 32 ............................ GACCCCCGGAGGACCAACCGTGGACAACGACA 10544 28 100.0 31 ............................ TCCTTCGGCTCCGCCGGCCGGATCGCTGCAT 10485 27 92.9 32 .....................A..-... TGTCGCGAAGTTCATAAGCGGGCTTAGGGCGA 10426 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 35 28 99.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTGGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGAGACCTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //