Array 1 806216-806373 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLGU010000001.1 Streptococcus equi subsp. zooepidemicus strain SEZ_19-053 tig00000001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ========================================= ================== 806216 26 100.0 39 .......................... AAACTCAGCAATAGCTGATAGGAGGGTCAAAAAGTCTCG 806281 26 100.0 41 .......................... CCGACACTGCGAACTAATCATTTGTGACTCCTTTCGTCTCG 806348 26 88.5 0 ...TT.G................... | ========== ====== ====== ====== ========================== ========================================= ================== 3 26 96.2 40 CCCCATACGGGCGAGTGGATTGAAAT # Left flank : ATTCGAGGGGATATTGATAGCTACCCACCTTTTATGATTTAGGAGATTACTGATGATGGTATTGGTTACCTATGATGTGAATACAGAAACAGCATCAGGGCGAAAACGGCTACGTCAGGTAGCAAAATTGTGTGTTGATTATGGCCAGCGCGTGCAGCATTCGGTCTTCGAATGCTCGGTAACACCTGCTGAATTTGTTGAGATCAAGCATAAGCTGACGACGATTATTGATACAGAAGTGGATAGTATTCGTTTTTACTTGTTAGGAAAGCACTGGCAAAATCGTGTCGAGACGCTAGGGCGTTCTGATAGCTATGATCCTGATATAGGTGTCCTACTTCTGTAAAAGGAGTGAGTGCGAGCCTGAGTCACTCATAAAATGCTAGGAGACTCGCGCTAAAATAAGCTAAAAAAATAGAGAAATGAGAGGTTATAGCTAAATATGTTATTGGCTAGCCTATGTCAGTTCTCTATAAACTGTGCTATGCTGCGCAGTCTCG # Right flank : TTTTGCTGCTATGCAAGGAGTGACACTGATTGAAGTCGCTCTCTTCTCGAGGGCGTGGTCCGTATCCCTGGTACTTTTCATGAAGGGATAAATCATATCACATTAATCAAGTTGATTTAAGTTTTTTATGGTACTATGTCAAATAGATAAAAATCTCTGTGTCAAGTGTAGTGGGTGACTGATAACTAAGCACGAGAGGAGACGAAGGTCGTCTTCTCTTTTATGATGTTCAAAGCAAGGTAAATACTTTTCTTGAAGTTGTCAACGTTTCTGAATCCAAAAGCATTGCGCTTGATACCTTTGATAAATTTGTTAGTTGCTTCAAGCTTGGCGTTAGAATAAGGCAGTTCAATGGCATTGATGATATAGTCGTTATAGCGTATAAAGGTGTTTAAAGTCGTTTTGAAGGTGTGATTGAGATGAGGCAAAGCATCTTGACTTAACCCAAAGAAGAGCTCTGTCTTCTTTTCTTGCAAGTGAAAAAGAAGTCATTGGTACAG # Questionable array : NO Score: 8.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.81, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCCATACGGGCGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CCCCATACGGGCGAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1111538-1111675 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLGU010000001.1 Streptococcus equi subsp. zooepidemicus strain SEZ_19-053 tig00000001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ================================= ================== 1111538 24 100.0 33 ........................ CCAGGGTGATGATATCAGAGAGCCAGAAAAGCT 1111595 24 95.8 33 .............G.......... TTATGGTAATGATATTAGAAAACCTGAAAAGAC 1111652 24 95.8 0 .....................G.. | ========== ====== ====== ====== ======================== ================================= ================== 3 24 97.2 34 CCCAGAATTACCAAATGAAAAAGG # Left flank : GGTAAAGCAGTAAATATACAGAATGTCGTTAAAAAAGATAGTATAGAAACTTCTTTTACTATTTATAGTGATTCAATTGATCTAGAAAAAATTAATTATTGGACAGATTCCTTCAATAATTGGTCATAATAACTAACTCTTTATAGTAATATGATTACTCCAGATAAAGCACACAGCAATAGACTCAGCCAGTAAGGAAAGGACGATAACAAAACGATGCTAACAAACCAAACGGGGTACAGGCATAGACTTAGTAAGCAGAAGCTACCTATTAGCATGGTTTCCTGCTTGCTAGGAATGGGGGTATTTATCTCTCCAACCTCTATCTCAGCTGATAGCCCTCCTACTATCACTATTAAATCCGCTGCAGATAAGGATATTAGTTCAAATCTACCAAAAGTTCCCCTGTCTAACGCTAAACCCGAAGAAAAACTGGAAGATACGCCTCAGCTACCAAATGAAAAAGGTCAAGGTGATGATATCAGAGAGCCAGAAAAGCT # Right flank : GTCAAGGCGATGATCTAAAGAAGGAGGAGGATCTCAAAAAGCAACGTAAAGAGCTTACAGAAAAGCTTCGTGGCTTAAAGACTGTTGAGGAAGTTTTAGAATTCCTGAAAATGCCAATTCCAGGTTTTGTAACAGATGTGGACTGGCAATTCCTAATGGCATTTGTTGAAAAAGGAACAGCTAATAAGACCTTTGAGAAAGACAAGTTGACATTACTAGATATTTACTCAACCTCAAGTGGTCATATGATATGGCTAGGCTACCTAGTGCCAGAAAAACCAGAACCAATGCCTAAACCTGAGCCTAAGCCGGAACCAATGCCTAAACCTGAGCCTAAGCCAGAGCCAATGCCTAAGCCAGAGCCAATGCCTAAGCCAGAGCCTAAGCCAATGCCTAAGCCAGAGCCAATGCCTAAGCCAGAGCCTAAGCCAATGCCAGAGCCTAAGCCAATGCCTAAGCCGGAGCCAATGCCTAAGCCAGAGCCTAAGCCAATGCCAGAG # Questionable array : NO Score: 2.53 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCAGAATTACCAAATGAAAAAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.50%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 3 1681174-1679422 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLGU010000001.1 Streptococcus equi subsp. zooepidemicus strain SEZ_19-053 tig00000001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1681173 36 100.0 31 .................................... TTACCTGTCAGTTTTGTAGTCTTGCTGATAG 1681106 36 100.0 30 .................................... CTGATAGATGTATGATACATCATCTCTTGA 1681040 36 100.0 30 .................................... AAATTGTTGCATTCCCCCACCCCCTTTCTG 1680974 36 100.0 30 .................................... CCAAAGCTTTCGCCAATTTCTTCAGAGATG 1680908 36 100.0 30 .................................... CTGACAAGTGTTCAGTCTGACAATGCAGCT 1680842 36 100.0 30 .................................... CGGAAGTCTGTCGCAAACTCCCCCAGATAG 1680776 36 100.0 30 .................................... AGCTACAGGTTATCATTATGATTATCCTTT 1680710 36 100.0 29 .................................... ATCAACAGGTGTTTCTTCAATAACCTTTA 1680645 36 100.0 30 .................................... TAATCAACGTGAGAACTGGCAATTAGCCCA 1680579 36 100.0 30 .................................... TTGTCATCAAGATAGGTACTGGAATGTGCT 1680513 36 100.0 30 .................................... TACGTTTGTTCTTGATACGTATGATAAGAT 1680447 36 100.0 30 .................................... CTAAGGTGCTTGAAGCCGAGAAGCTAGCCA 1680381 36 100.0 30 .................................... TGTAGAGGCTACAGCTACCCTTTACGCAAT 1680315 36 100.0 30 .................................... CAAAAAACAACACACTTTACCTGCCACCAG 1680249 36 100.0 30 .................................... ATCATTGGATTTGCTCATACAATCCCTCAA 1680183 36 100.0 30 .................................... AGCTATCAGACAGTGGAAAGATGATGGTAA 1680117 36 100.0 30 .................................... ATTTAAAAATGCTAACTGCTGCAATTTATA 1680051 36 100.0 30 .................................... ATCATTGGATTTGCTCATACAATCCCTCAA 1679985 36 100.0 30 .................................... ACAAGTATCAGCTAGAAGAGCGGAAGAACT 1679919 36 100.0 30 .................................... GTCAGTACCAAGCCTATGACGTGTTTACGG 1679853 36 100.0 30 .................................... TATCAAAAATAGTTTGTAAATTATCAATAT 1679787 36 97.2 30 ..................T................. ATGGCCGCATGCACTATACATTTACCGCAA 1679721 36 97.2 30 ..................T................. TCGTTTCACATTCAAGTAAGTGTGCCCGAT 1679655 36 97.2 30 ..................T................. ATGGCCGCATGCACTATACATTTACCGCAA 1679589 36 97.2 30 ..................T................. TCGTTTCACATTCAAGTAAGTGTGCCCGAT 1679523 36 97.2 30 ..................T................. AGATGAGACGTGTAATGAATGGTTTGAACA 1679457 36 86.1 0 ..................T..........TT..T.T | ========== ====== ====== ====== ==================================== =============================== ================== 27 36 99.0 30 GTTTTAGAGTTATGCTGTATTGAATGGTTCCAAAAC # Left flank : TTACAGGTGTTTAAATACCTCACAAAAAAGAAATTATTAGTTTTTGTTAACAGTGGCTCCTACTTTACTAGAGAAGAATTTGAGCAACTAAAAGAATATGTTGAATTGTCAAATCAAACTGTTCTCTTTTTAGAGCCAAGACCTCTGTATGACTTCCCACAATATATTTTAGATGAAGATTATTTTTTAGTTACACAAAATAAGTTAGAAGGTATTGAACATTAAGGATAGGGTAAGTGTTTATGTTCTCTTAGAAATCAACCGTCCAGTCAGGTAGCGGTTAGTTAAGCTCTCTAAGTAGATGAAAGTTGGATTAATCATGTATCATAGCTGGTAAATTAAAGATTGACGATAACAAAATGGCTTGGGATAGGGGAAACCATTGAGATAATATACTTCTTGAGTTATAATCTTGATAGTTCAAAGATTATTTGCAATTGAAGTTTAGCCACGACAAATAATCTGATAATGACGTCTTATAGCAAAAGATGGTCTACGAG # Right flank : CAGTAAATGATTAAAAGGTAACAGTTGCAGTAGTAATTGGTCTTCATGCTTGCTATTAAGCAAGTAACGATTGCTAATGATGGGTAATACTACGATAGTGATTGTCATTGTATGGCCTCTTTTCTGCTGGCATAATGGGGACAAATTAAGGGAACTGTAACTTCCCTTTCCCCACCAAAGGGGATTTATGCTTGCGATAGCTTAGGTTGTCGGTCAGGTTAATCAATATTTTCAGGTAAGATATGTTTGATGTAGTGGTTGTTGAGGAAATTACCCTTACTTTTATTTTTCTACCCTACTATTGGCAGAAAATGACCATAGAATGAACTGGTCTGTTTAATCTGTGATTTATCAAACGATTGTCAATATTTTAGTAATAGCTCGTTTGCTGTTACACCAAAAATGTTATGCAGCTTGATTAACTTTTTGATTGGAGCTTTGCGCTGGCCATTTTCTGTCATACTGAGAGTTTGTTTGTTGGTTTCTAGTAGCTCAGCAAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTTATGCTGTATTGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTAGAGTTATGCTGTATTGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //