Array 1 3127089-3128213 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP044181.1 Salmonella enterica subsp. enterica serovar Heidelberg strain AR-0404 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3127089 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 3127150 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 3127211 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 3127272 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 3127333 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 3127394 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 3127455 28 96.6 32 .....-....................... AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 3127515 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 3127576 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 3127637 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 3127698 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 3127759 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 3127820 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 3127881 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 3127942 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 3128003 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 3128064 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 3128125 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 3128186 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3144472-3146133 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP044181.1 Salmonella enterica subsp. enterica serovar Heidelberg strain AR-0404 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 3144472 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 3144533 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 3144594 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 3144655 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 3144722 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 3144783 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 3144844 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 3144905 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 3144966 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 3145027 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 3145088 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 3145149 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 3145210 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 3145271 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 3145332 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 3145393 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 3145454 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 3145515 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 3145576 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 3145637 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [3145679] 3145679 29 100.0 31 ............................. AGCCGTTTCCGCTAAATACCCCGCAGTGATT 3145739 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 3145800 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 3145861 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 3145922 28 96.6 32 .....-....................... TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 3145982 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 3146043 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 3146104 29 96.6 0 A............................ | A [3146130] ========== ====== ====== ====== ============================= ====================================== ================== 28 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCAGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //