Array 1 151415-150645 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015193.1 Thermococcus chitonophagus strain GC74 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 151414 30 100.0 36 .............................. TTTGACCCCGAGAAGGTTAGGGCAAAAGTTATCTTT 151348 30 100.0 38 .............................. AGCTTCATTCCGGACGGGCCCAGCTCGGCCGGGCGCCA 151280 30 100.0 38 .............................. AGTTTCGTGTTGTTCAGCCAGACCTCCACCCTTACGCT 151212 30 100.0 37 .............................. ACGAGACTGCGGCGACGGCTATTATTGCGGCGAGCAC 151145 30 100.0 36 .............................. ACTTCTATAATCGACACGTCAACATTTCCCATCTCA 151079 30 100.0 34 .............................. TGGCAAAACATCCAGCTCCTGCTGCAGTCCCCAA 151015 30 100.0 37 .............................. CCTAAGAAGTTGTTCTTCAGGGTATTAACAAAGTTTG 150948 30 100.0 39 .............................. ACGGTAGCCTGCCTTGAACGCCCTGTCGTCGTTCACCAT 150879 30 100.0 38 .............................. TTCTCAACGAATGCTTTAACGTCGATCGGAGGTTTGAA 150811 30 100.0 40 .............................. AAATGACGGCTTGGGGTAAGTATCGCTGCCCCTACTGCTT 150741 30 100.0 37 .............................. TTGATATCTCGATAATTTAGCATACCTCGCATTAAAC 150674 30 96.7 0 .........T.................... | ========== ====== ====== ====== ============================== ======================================== ================== 12 30 99.7 37 GTTCCAATAAGACTAGAAGAGAATTGAAAG # Left flank : CACCGCACCATTCTTCTTCTAAGAATTTTAGAAACACCTCCTTGGGTAGCTATTTTTCTTAGTTTCCCTGATCCTTTCTCGAATTTGCTAATTCTCTGCTCTTTAGTCTTTGGAGGGTTTTAGTAACATACTGTGAAAATATCACTAAATGTTTAAATTTTGGTTATACTATGTAACGAATTTTCTTCAAATTTGTCTGTTAAATTATCAGAAATCTTAGTTATATATTGACGCACGATATATCCTGAGCTTTTGGCATGATGGAACATGAGAGAAGAGTGGCATTCGAGAGAAGGCTTCAGGGCATTTTGGAGTCTGCAAGGGTGTTTAACTTTTAGATATTTTGAGGTTGCACCTCCTTTTATACATTGAATACGAGGTTTATAGCCCGAGTTAAGATCCGCGTTATTGGCAGGTATAATGTGGCCCGTCATCGAAAGGCTTATAATATCGGAGCTTTTTTAGAGGATATTGGGAGAATTGCACGAAAAATCGCGCCT # Right flank : AAAGGGGTATTAAATCCTGCCGTACTTCTTCATTATCTCCACTAGTTTATCCTTTGGGAGCTCGTACCTCACGTGATTATCTCGTCCATCCATAGTCCTTGCGCTCAGTAGTGAGTTTATTATTGCCTCTTCCACGGCTTCCGCCGTTGCCTTAAACAATGGTGAGAGAACTGAGTCGGGCAACGCTTTAATTTCCATAATATCCTTCTCGTAGTGCTTAACCCTGTTTGCAGTTGAGAATGCAACCGCTATGTCTCCGCTTCCGTTGTAGGCGTAGCCTCCAGTTCTAGCTAACCCCACCGTTGCCCTCTTGGCCAGCCTGTTTAGCTGTCTTGAGGTTAAGGGTGCATCGGTGGCAATGACCATTATTATGCTTCCCTTACCCTCTCCTCCTTTACCTGGCCAGTCTTTCAGCTCAATACCCACGGGCACTCCCGCTATCGTTAAATCCTCCCTCCTTCCAAAGTTGCTGAGAACTAATGCTCCGACCGTGTACTTCC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATAAGACTAGAAGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : III-B [Matched known repeat from this family], // Array 2 172991-174348 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015193.1 Thermococcus chitonophagus strain GC74 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =========================================================== ================== 172991 28 100.0 38 ............................ CATCGCCTTCTTGGCACCCTCCTTGATCCATCCTGGGA 173057 28 100.0 39 ............................ CTCAATAAGCCAGCCTATGGCTCCTCCAACGAGTTTTCC 173124 28 100.0 39 ............................ CATGGCCTTGACAACGATATCCCCCAATGCGGGGAAAGC 173191 28 100.0 39 ............................ CACTACAAACTTGCTCAATCCATGACTCCTTGCAAATTC 173258 28 100.0 44 ............................ CGAAAATCCACTCTTTCGACAGTTCGTCCTTTTCAACAACTCCA 173330 28 100.0 59 ............................ CAAAATTTCTTGAATGACTTTTATCGAGTGCTCTGCCCCCTCTATCCCTGCAATCTCAG 173417 28 96.4 37 ..............A............. GCTAAGTCGTCCGTATGAATTGTACCTGCCGCACTTG 173482 28 96.4 39 ..............A............. GGGGCCTGTTTACCGGGGCTAAGAAATACGGCTGGCTGG 173549 28 96.4 38 ..............A............. GATCTCAAGAACCCTAAGCCTGCTACCCTAGCAGTTGT 173615 28 100.0 46 ............................ GTTTTTCTGGGTGGGTTCTAACGTAGGTGGTTACTTGGGGTAGTAT 173689 28 100.0 48 ............................ GTGGATCCTCCTAAAGCGCCATTCGGCCATCCTGCTGGCCCTTCTGAA 173765 28 100.0 49 ............................ GAAGGCTTTCTGGAGTGATGGCCCGCTGTTCTGCCTGTCCTTTGTTTGT 173842 28 100.0 38 ............................ GACACTAACTTCCTGCTCCTCAAATCCCAATTTTATAA 173908 28 100.0 49 ............................ GGTCAAGTTGCGGACGATCTTGGCGTGGGCCCTGTCGAGGGCCTCGAAG 173985 28 100.0 38 ............................ GAGGGATTCTTGATCCATCAAATGTGTCACCAAAATCA 174051 28 96.4 38 ..............G............. GATTATCTTCTGTACCAACTGCTCTGCGTTTTCAACAC 174117 28 96.4 40 ..............G............. GCCGATGCTCTTTATTCCGCTCTCCTTGATTCCCCCTATG 174185 28 96.4 47 ..............G............. GTCCATATTTGATCTTGGCGATCCTACTCCTGATATTCGGAGCCATA 174260 28 96.4 34 ..............G............. GAAATGATGCATTTTCCTAATTAGCTTTTGATAA 174322 27 71.4 0 T.........T...T.G.....-..CTG | ========== ====== ====== ====== ============================ =========================================================== ================== 20 28 97.3 42 GTTTCCGTAGAACTCAATAGTGTGGAAA # Left flank : GTTTTTCATTTGTTGGTTTTGGGTTTGTTGGCGTTGTTTTATCCTATTGAAGGCCTGCTCGGGTCTGGAATTCTGGATTAAGGGTTTAGGTTGGGAACTACTGGGTTTAATGTCGTATTATAAATTTTTGCTCTGAGAGTATCTCGTTAGTGGTAATTTATTGGATGTTTTAGCTAACTAGGTGGTTATAACTTCTCCTGGCCCTATTCTTGATTTAAAGTCATAGAAACCTTAAATTGGATAGTCTAGGAGTTTTAGTTAACTTGCATTTTTGGATTAATTTAACGCCTCGAACTTTTTCGAGTTTACTTAGTTTCGATTGTTTGGAAGTTGATTTTACGGGTTTGTAAGGGTGGGTTAGTGAATTATTGTCATTTTCTGGCCCCGTTATTTTCAGGGTAAGTTTATAAAGGAATGACAGTGCTACGGGTTTCCCAGGAAAGTAAATTATTTAAGCCCTCAGAAGAGAGTATCAGTCGAACAAAGCCAAAAACCCCAAA # Right flank : GGAGGCTATGAAAAGCCCAATATATATTACCCAGCCCGGGATATTGGAGAGAAAGGCAAATACAGTTTTCTTCGTGAACGAGAACGGAAAGAAAGCTTTGCCAATACAGAACATAAGTGAGATCCACTGCTTCGCTCCCACAACATTAACCAGTGGGGTAATAAAGCTACTTGCAGATAACGACGTTCCCGTGCACTTCTACAATAAGTATGGCTATTACCGAGGCTCCTTCATGCCCGCCGAAGGCCAGATTAGCGGAGCTATAGTGATAGCCCAAGCCTCCCACTACCTCGACAAAGAGAAGAGAGCCTATATAGCCAGGGAGTTCCTGAACGGAATAAAGGCCTCGATGATAAGGCTACTCAAATCCCAGAGCGTGGACCCAATGGACATTGAGGAGATCGAGGTAAGAGGAGAGAGCGCCCAGGAACTCATGGGGATCGAAAGTCAGCTATGGAAAGCATTCTACGAAAACTTTGCTGGAATGCTAAAGTACTTCT # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCGTAGAACTCAATAGTGTGGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 3 769273-770319 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015193.1 Thermococcus chitonophagus strain GC74 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 769273 29 100.0 44 ............................. ACGCTAATATGTACGGTGGCTTCTCCGGGCACATGTAGCTCCCG 769346 29 100.0 36 ............................. TCGTCTCTTGGCAAGCTTGTAGTCAAGAACTACGCC 769411 29 100.0 39 ............................. AGAATAACACCATCCTTGTCAATTTCTTCTGCGACAACA 769479 29 100.0 46 ............................. TTGCTGGAAGCCTGTCAATGTGGAGTTCTGGTCCCCTCGTGCCCCA 769554 29 100.0 39 ............................. CACCTCACCCATCCCGACAGCCCGCACCACCCTTCCCGC 769622 29 100.0 47 ............................. CACTCACAATCGAAAAGCCCAACGAAATCGTGATAAGTTTCCGTAGA 769698 29 100.0 38 ............................. ATGTCTAGCCCGGGGTTTTCGCCCACCCGGGCCGAACC 769765 29 100.0 35 ............................. CTTTTCTTTGGGGGTGCAGCCATGAGGAGGGTGTA 769829 29 100.0 47 ............................. TTCCACCCCCACTTCTCAGCCCCGGGGCCTGAGCCGGGCTACCCCAG 769905 29 100.0 49 ............................. GTGTAGTCCACTGATGCGTAGCTTACTTTTTGCTTTGGTATTATGAAGT 769983 29 100.0 36 ............................. GAGAGGGAATGAGTTTCAACAAAATCATTAGTACAT 770048 29 100.0 46 ............................. CCGAACTCCCTGATCTGCTGCCTCCTCTTGAAGTAAATGTCCCTAG 770123 29 100.0 37 ............................. GGACAGGGCAAAGATGCTTGAAGACTTGAAGAAGTTA 770189 29 100.0 74 ............................. AGGTAGGGCCAGTGGAAGAGCCGAAGGTGGACTGGGATGGAGCCGAGGGTGATACTGACGTTGAAGAAGGATGA 770292 28 89.7 0 ..................-.G.G...... | ========== ====== ====== ====== ============================= ========================================================================== ================== 15 29 99.3 44 GTTTCCGTAGAACTAAATAGTGTGGAAAG # Left flank : TTTTTCATTTGTGTGTTCTTGTTTTATTGTGATTGTTTTGTCATATTGGAGGTCTGCTCGGGTCTAGATTTTCCAATTAAGGATTTAAGAGAGAGAATGCCTAATTTAATCAGAAATTATTGGTTTTTGTTTTAAAAGTATCTCATTAGTGGTAATCTGCTGGATGTTTTAGCTAACTGAGTGGTTATAACTTTTCCTAGCCTTATTCTTGATTTAAAGTCCTAGAAACCTTAAATTGGATGATCTAGGAGTTCTAATTAACTCGCATTTTTGGATTAATTCAGTGCCTCGAACTTTTTTCTGGCTTATTCAATTTCGATTGTTTGAAAGTTAATTTTACGGGTTTGTAGGAGTGAGTTAATGATGAACTCCCCGTTAATTCCTCTGTTATTTTCAGGGTAGGTTTATAAAGGAATGGCAGTGCTACGGGTTTCCCAGGAAGGTAAATTATTTAAGCCCTCAGAAGAGAGTACTAACCGAACAAAGCCAAAAACCCCAAA # Right flank : GGATTTAAAATAAAAATCAAAATAGGACGGGGTTGCCCCCGAGTGGCCTCCCCGTCTGAAACTCATGAGGGCGGGGACTTGCCGTGAGGGGGCTTGGCGAACGCCGCACCCCCGTCCTGATCCTGCTATAAGGGTTAAGAAGAGAACATGGTCACGAAGACAATAGCCTCTAAATACCTCTGTTATTTTGCATTTTCTTGTGTTTTCCTTGTACATAAGCAAACCTTAACCTTAATATCTCGCCCTCGTATTAAGCTGTGGATGGACATGATGAAGATGAACCCGCTGATCTGGTGATGAGGGCGCTCATAGCTGATACACAGAACTGTCCCCTAATGAAAATCCTTTTAACTGAATTAGGCGAACCAAATTCTGGCGAGGCCACATGGAGTACGTCATAGAAGCTGAAAATCTCACGATAACCTATAATGGTTATGAAGCCGTCAAAGACTTGACGTTTAAATTGAAAAAAGGCGAGACTATGCTCTTGCTCGGCCCCA # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.20, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCGTAGAACTAAATAGTGTGGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 4 873236-872340 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015193.1 Thermococcus chitonophagus strain GC74 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 873235 30 100.0 35 .............................. GCTGACGTGTTGACGTGGAGCTAATTCACTTTATT 873170 30 100.0 37 .............................. TTTATCAATGCCCCGTACTCCACGTTGGCCTGTTGGT 873103 30 100.0 35 .............................. GTTTGGGTTGATAGCGGTCTTGGCAATAATTGCGG 873038 30 100.0 36 .............................. TATGTGAAAGTCTCAACTACAGGTCTAACACTTAAT 872972 30 100.0 36 .............................. GAGCTTGTGGTTGTTGTTGGGGTTGGGGCCGGGGTT 872906 30 100.0 36 .............................. GAAGATGCCCTTGAACCTCAGTACCTTGCCACTCTC 872840 30 100.0 36 .............................. CAGGGTTCAACGATTGATTCTGCTGATTGGAAGGCT 872774 30 100.0 37 .............................. CAGTTAGATTTTCGATTGGAGGAACTATACTGATTGT 872707 30 100.0 41 .............................. GCATCCGTTGAGGACGCGGAAAGAGTCGAGGAGCTGATCGC 872636 30 100.0 37 .............................. GATTTCTCTTTTCTTTGGGGGTGTCACTATGGTGGAG 872569 30 100.0 37 .............................. AGCACACCCCGGTGTAGCGCTGGTAGATCTCGGTCAC 872502 30 100.0 37 .............................. GACGGGTGAGATAGTAGAACAGATGGCCATACCAGTT 872435 30 96.7 36 ...............A.............. ACGTTTGGTTCAGTCTTCACACTGAAGGATGGTAGT 872369 30 96.7 0 ...............A.............. | ========== ====== ====== ====== ============================== ========================================= ================== 14 30 99.5 37 GTTCCAATAAGACTAGAAGAGAATTGAAAG # Left flank : GATGGCACAATTGGTTCCTGACATCTGAAGATATTTAGAAGCAATAGTAGATGCCCCAATTTAAAAGCTATCGCCCTTTTGATGTTTTTCTCAACTATTACAGCCCGGAAAAGCGTTTGGATGTTTTTGGTAATCTTTTGTCACTAAATACCAACATGCCCAATATAGCATGCTAGAATATTACGAAATATTTTTGAAATTTTCAGATTTAAGAGAAAATCGCTTTAATATAAGTGTTCGAGCGTATACATCGTTGTTCTTGGTAAAAATACTATCTAGATCATGAATTCGCAGTACAAAGTGGGGAGTAACCTTTGCACGTCCTTAACGCTGATAAGAAATATAATCAATACTGCCCACAATCACTAATTTCAGCCAGTTTGTCATCCCTTTAGTACAGATATTTTCATAGGGTTTTCATAACTCCCCTTCAGCAAAAAGCTTATATTAATAGGGACACCTTAGAAGAGTTTAGACGAAACGAGAGAAAAATCGCGCCT # Right flank : CGAGCCAAATACTCATAGGTTCTAACTGGGAAAATAATGAAAAACATCCATATTTATTTAATTAGCTTGGCTATTTTCCTGGATAATTCATCAAGAAAAGCCATAAACTCCTCTTCATCGTACATTACTAAATTTTTCTTGTTCTCTATTTCTCGCTTTATTTCAAGAATCTCTGGGGGAACTTTGCCATATTTTTCCATTATTTCTATAGTTTTAATTGCAGCATCAAGCAATCTTAGTGGTCCATATAGACATGGTTCACCTAACAGTCCTCGAGCACTTGTTATAAGAAAGACTATTAATTTAAAATGGTCATCATTCAATAACGTTTCCGTATTCTTCAAGATGCATCACCTCTTTTCGTCTTTTTGGAGGCTTCGGCCAGAATTTTGGATATCCAAGGGTGAGTATCAGAACTGGATCTACATGTTCTGGAATTGATAATATTTCCTTAACTGCAACTCTATTAAAAGAAACAACTGGACAAGAACCAATGCCCT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATAAGACTAGAAGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,9 Confidence: HIGH] # Array family : III-B [Matched known repeat from this family], // Array 5 986734-986229 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015193.1 Thermococcus chitonophagus strain GC74 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 986733 30 100.0 36 .............................. TTGGGAGAACAATAAGACCGTTCCCACCGGGCTTCT 986667 30 100.0 36 .............................. TGGGAGTTTGAACATACCGATTCTGAATACATACTC 986601 30 100.0 40 .............................. TGTTGCTGACCCAACCACCGACGATAATTAGGTTCTTATC 986531 30 100.0 36 .............................. CGATGTAAATCGATGGCTCGGCCCAGTAGAGCCTGC 986465 30 100.0 37 .............................. ACACGGAGCTTGAGGGACATTGGATTAGATAGTGGGC 986398 30 100.0 38 .............................. CCAAGATGTACAGCCCAAACTGTCTCTCTTGACTGTCG 986330 30 100.0 42 .............................. TTGGCAGTTCCTGAAGAATTTTATTAAGCTCTTTAGGTTACA 986258 30 80.0 0 A.A.G.C.............T..C...... | ========== ====== ====== ====== ============================== ========================================== ================== 8 30 97.5 38 GTTACAATAAGACTAGAAGAGAATTGAAAG # Left flank : AGAGTTCGGATCCCGAAAGAATTTGTCGAAAAATTTTAGAAACCCGTTAGGTTACTCGATTTTGCTGTTTTCTCTTGTTTTATGTCTTCATTTATTAAAACGGGGTGTCGTAAGCCAATTGGATGATTTTAGTTACTACATGTTATTATATTTCATAATGTGTTGTCATCTTATAATTAATGTTACGAAAATTTTTCTTTAATTTTGGAAATCTGTTCACGCCAAAACAATCATGGTCAAATCCAAATATTGGATGTTTAAATGCATTGTAGGACTGAAATTTATAAGTATTGGTTAAAATAGTGCTTAATAATGTCTTGAACTTCATTGTTGTGGAATATAATGGGCAGACATCATGGCCCTAAGGTTATGTTTGGGTGCTGTAATGCCCTTTCTATGCCTCTATATGTGGCACACCTTAAGCTACCCCTATTCGAAAAACTTATATTATCCAAGCCCACATACAGGAGAATGAACAAAATGAGGCAAAAATTTGGCCT # Right flank : AGAGAGCTTGAACAGACAGGCTAGGAAGTTTTTAGAGTTGCTTTCTGCGGATTTAATTATCAATCCGTCGGACAAATGATTCCTCCATTTTTACACCTGTCTACCTCCAGCTGAACGGTTACGTGCTTTACTCCGTACTCTCTCAGGATTTCTTCGATCCTATCTATTATCTCCTGTCCCCTGCTTATTGGCATGTCCTCCACCGACACGTGGCACTCAAAGTGTACCTCATCCTCCCCAATCCTCCACGCGTGGAAGTGATGTGCATTCTTAACCCCAGGGATTTCCTCTATCCTCCTCTTTATCTCCTCAAAGTCTAGTCCTGGGGAAGCCTCCATTAACACTTCAACGCTCTCCTTGAGTATGTAATATGCTTCCCTTAGGATGTAGAGGGCTATTCCAACTGTAATTAGAGGATCTACCCAGGAAACGTTGTACTTCAGCATTAGAAGCCCCCCAATGACGACGGCCATCGAGGATAGGGTGTCGCTGAGCAGGTG # Questionable array : NO Score: 9.14 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAATAAGACTAGAAGAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: R [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : III-B [Matched known repeat from this family], // Array 6 1598299-1598931 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015193.1 Thermococcus chitonophagus strain GC74 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1598299 30 100.0 35 .............................. TCGTTCTGAAGAAGTCTTGGAGGCTGCCAAACAAC 1598364 30 100.0 37 .............................. TGTTGATCTCATAATCAACTTTGATCTCAATCCTTGG 1598431 30 100.0 36 .............................. TTATGATCTCAAGGGCTGTTGCTTGTGGATTTGATG 1598497 30 100.0 39 .............................. GGGGACCACTGACTTATTGGCGTGGTAACTAATATATCA 1598566 30 100.0 37 .............................. ACTATTATCAGGAATTCTTCAAGCATGTGTCTTAGGA 1598633 30 100.0 36 .............................. TACAATGTATCCATTATCCTTTCCAAAAACCTTGGC 1598699 30 100.0 36 .............................. GCAGTCTTTCTGCACCACCTCGTCAATGTGCTGAAG 1598765 30 100.0 38 .............................. GAAATACAAGCGCTACACAGTAACATTCTACGCATACG 1598833 30 100.0 39 .............................. TGGCTTCCTCTTTAAAGCGAGAAGTTAGGACACCGTCAA 1598902 30 96.7 0 .............................G | ========== ====== ====== ====== ============================== ======================================= ================== 10 30 99.7 37 GTTCCAATAAGACTAAAAGAGAATTGAAAT # Left flank : ATGCCATAAAGTTCCCTAGTGAAATCGAAAAATCTTAGATACCTTTTCTGCTCTCTTGTTATTTTCATTAATCCTGTACGAGCTGTGGAAAAGGGAAAATATTTGGTCTACGCTGATTGGAGGTGTTTAGTAACCATTAGTTACTAAATGATAATAGGTTACATAAAATGCTGGATGGTATTACGAAAATTTTATGATAATAATTAAAAAGCATTTTAAAGGCAGATATAAAATGAGACAGGTACGAAGGATTTTTGGTACTATAATTAAGAGGTGCTTTATCTTTTTACCGACAAAAATGCTCCCTAAGGTTGCATAAACTGCAGAATTAAGAGGGAAAGAAGCAGAAAGAAAAATGCCCTATAAACATATTTTGCAATTCTTGTAGGTTCTTTTAATTTTTAAGTTGGGAAGGGAAATAAGAGAACCCTTGCCAAAAAGTTTATAATATCGGGGCTTTCTTAGGGGATATCAGGAGAATTGCACGAAAAATCGCGCCT # Right flank : GGCCTTGTATGAAATCAGCTACCTCTCCAGGAACATAAGGCTAAAACTAGGACTAATTGAAGGAGTAAACGCTACTCCCAGCAAGCTCATGCGCTTTTTCCTAATATATCATAAATTTAGGCATAGACTAAAAGAATAGATTAATAACAGCAAAAAATACAAAGGAAGTCACATAAACTCCTCAAGCTCAAGCTCCTTGAGCTTCTCTTCTGGAATCCTTCCGTCTTCTGTCCATCCTCTGAACTTATAGTACCTTGGTAGCATCTCCTTAAGCCTGACGACGTGTCCCTTGTGTGGCCCTTCTGGCATTGGCTCTTCAAGGAGCCTCTTAGGTAGTGTGTCTTCCTTGAGTGGGTCAAGGCCGGCTTTAAGGTTGAATAGCCTCTCAGCGTTCCATATTCTCTCTCCTATCTTAAGATAATCCTCGGTTGAGAAGTCCCAGCCAAGTGCCGCATTTAGGAGATCCCTGTAGTCATCAGCACCTAATCCAAACGTCGTGA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATAAGACTAAAAGAGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: F [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : III-B [Matched known repeat from this family], // Array 7 1634161-1633921 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015193.1 Thermococcus chitonophagus strain GC74 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================== ================== 1634160 30 100.0 36 .............................. AGGAGAAGGTCGCAGTAGTCTTCTGGACGCCTGTGA 1634094 30 100.0 38 .............................. CATTGTGGGAGGAATAATAGCAATTCTGAGGAGGTGAG 1634026 30 100.0 46 .............................. CTCGAAGTCGAGAAGATGAAGCTGGAAGAACTTCAGGTTCCAATAA 1633950 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ============================================== ================== 4 30 100.0 40 GTTCCAATAAGACTAAAATAGAATTGAAAG # Left flank : ACTATGTACATGTGGGGCACCGAATAGTATTCAATGCAAGAGGATATTTCTTCTTTTTGGATATATGCACAGAGCAAGGCTTAGTTTTCCTCAGTAGGGTCGCTATTCTCTCTGGAGGTTTTTAATAATCTTGTGTTAGAAAATTACATAGTGCAACAAACAACTGATTATTTTGTAACTAAAATTTTTTGGCAGTATGGTATTAGTTTTGTCCTGGCGGGTTTGATGTAGCAACTAGGTATAATTTGCATTAGAGGGTAGGGCATGGATTTTATCCTCATATTGGCTGTAATATCGCATGGATAGGCTTTGGAGTTTACCATCTCTAAGTGCTTAAAAACTGTTCGGGAAAGATAGTGTCTTTAACCTGCCATTTCGTGGCGTTTAGTCCTCCTTTTATTGGGTGCCTCTCTGCTTTTAAATACCACCATCAGCGAAAAACTTATATTGTAACAGTTTTCTTACGACTATTTGATGCGAATCGAGCAAAAATTGGGCCT # Right flank : ATGTCCACTACGTGGACAAGGACGAGGGTCTTCGCTGGGGATGTATCCTCCTATTGGTGTGAGCTTTCTGGGTTTAGCTCTTCCTTTTTGTTAGGGCGTCGCTAAGAAAGACAATAATTTTTACTACTAATAAACAAAAACAATAAAAAGTCCTTTGTTTTTGATTTTAGTGGATAAAATCCTTGTTATTTTATTTTACAGCATGTTTAGCTAGTATTTAGATTATTTTGCTTCTATGTGCTGAGTACTTAGGCTGCTAATTTTTCCAACTCTAAATCAGTAAATAATGCTGTCGTTTAGTTATTTTTATTGGCGTTAACTGAATAAATGGACAATAAATTAATCAAATAACTGGTAATTCAACAATAAATAACCAAGAAAATTTAATAAACATCAATTTTTCCTAAGGAAATCAACTCAAAATGAAACACCTCTGGGGATGAGATAATGTCAAAATGCAAATACTCCAAAAGACGGTTTGTGTACAGTACTGAGTGTTT # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATAAGACTAAAATAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: R [matched GTTCCAATAAGACTAAAATAGAATTGAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.27 Confidence: HIGH] # Array family : III-B [Matched known repeat from this family], // Array 8 1832016-1829953 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015193.1 Thermococcus chitonophagus strain GC74 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================================== ================== 1832015 29 100.0 41 ............................. AGTGAGTCCCTAGTAAGGTCAATTGAGTATCTGAGAGCGAC 1831945 29 100.0 41 ............................. CCTTTTTAGCCCTTTCCCTTTTCTTTGGGGGTGCGCCGTTT 1831875 29 100.0 38 ............................. CTGGCGAGATAGGATTTTAGCGCTCACGTTTCCACCAT 1831808 29 100.0 47 ............................. TCTTCCTTTCTCTTCTCCAAATAACTAAGCACGTCCTCCACACCCAT 1831732 29 100.0 42 ............................. AGGGTTTGGAAAAATTGCAGATGTTGGGACTCAGCTAACTGT 1831661 29 100.0 39 ............................. CAGTTCGTACTTGTGTAGCTCAGCCTCTAAATCGCTCAC 1831593 29 100.0 45 ............................. ATCTTAGGCCGTAAAGGTAGGTTGCTAAGCCTAAGCTCCTATCGT 1831519 29 100.0 37 ............................. ATTAGCCTCTTGATCTCATTGTTGTTTTTGCCAGTTT 1831453 29 100.0 36 ............................. CTTCCCTCCTCGCCTCAACACTTGCGGCCGTAAACT 1831388 29 100.0 37 ............................. TCAACATCGACCCAGAGACATACAAGAGCGAGAGCAA 1831322 29 100.0 52 ............................. CCATCCCTACTGTCTTTGTTGTTTCTAAGTCTTCTCTATTTCGTTTCCGTAG 1831241 29 100.0 40 ............................. TTCTCGATGAAGGTTTTGTCGGCCCAGTCGTGCAGTTCTG 1831172 29 100.0 43 ............................. TTCTACCCCGTCCTCATATATCTTGTATGTGATTTGGTGACTA 1831100 29 100.0 35 ............................. CGAATGTTACGTCTGTTGACCCATTTGCGAACCTC 1831036 29 100.0 37 ............................. ATGTTTGTCCAGAACTCTAGTACCACTCCTTGTTCAC 1830970 29 100.0 42 ............................. GCCGTTCTTTGCAATCACGTAGTCGCCGTCTTTGAAGATTAT 1830899 29 100.0 40 ............................. AATCGTAGTAATAAGTAATCCGAATAGGTTTGCCAGTTTC 1830830 29 100.0 38 ............................. CAAGTTTGCAAGTAAAGATGAGGTGGCGGAATTAAAGG 1830763 29 100.0 36 ............................. TGGACGTGGAAGCGTATGCAGACCCCACAGTCTCAG 1830698 29 100.0 43 ............................. ACCAAGAACCCCTCCTGCAGTATCCTAGCAAATGTTGGCGTGT 1830626 29 100.0 41 ............................. GACACTGGAACAACGACCCTCGGGAGTATTGCAACACCCTG 1830556 29 100.0 37 ............................. AGCTCGTGGGTGCAGAGAAGACTGTCGAGAACTACCT 1830490 29 100.0 51 ............................. TCTTTTGTCGGGATTGCCGCCCATAACACCGCAATTCCATATCTCGTTCTC 1830410 29 100.0 36 ............................. GCCTCCTGCTTGGCCTTTATCTTCGCCTCGATGGCC 1830345 29 100.0 36 ............................. GGCAAAGGGGACTTGGGGGAGAGTAGGCATAAGCCG 1830280 29 100.0 47 ............................. ACCTTCCAACCGCTCCTCAGCGCCTCCGCGATCAACTGTTTGTTTCC 1830204 29 100.0 48 ............................. AGGAACTCGTCTATTGCTGTTTCGTCCCCTTCGTGCCACCTCGTTTCC 1830127 29 100.0 51 ............................. CCGGTATCTTGACTGCGCTCCTGCCCGGCTTCAGGCTTACCGTCGCCCCTC 1830047 29 96.6 37 ..............C.............. TACAGAGCTTTTTCTTTGTATTCCATGCCCATATTAT 1829981 29 93.1 0 .................C...C....... | ========== ====== ====== ====== ============================= ==================================================== ================== 30 29 99.7 41 GTTTCCGTAGAACTAAATAGTGTGGAAAG # Left flank : TTTTTCATGTGTTGGTTTTGGGTTTGTTGGTGTTGTTTTATCCTATTGAAGGCCTGCTCGGGTCTAGAATTCCTGATTAATAGTTTAGAGGAAAGAATACTTAGTTTAATTCGATATTATAAACTTCTGCTTTTGGAGTATCTTATCAGTGGTAATTTGCTGGACGTTTTAGCTAACTGGATGGTTATAACTTCTCCTAGCCTTATTCTTGATTTAAAGTCCTGAGACCCTTAAATCGGATGGTCTAGGAGTTCTAATTAACTCACGTTTTTGAATTAATTCAGTGCCTCGAACTTTTTTCTGGCTTATTCAATTTCGATTGTTTGAAAGTTAATTTTACGGGTTTGTAGGAGTGAGTTAATGGATTATTGTCATTTTCTGGCCCCATTATTTTCAGGGTAGGTTTATAAAGGAATGATAGTGCTACGGGTTTCCCAAAAGGATAAATTATTTAAGCTCTTAGAAGAGAGTATTAGTCGAACAAAGCCAAAAACCTCACA # Right flank : TCACATCGCTGTCGGAAATACCCACTACAAAAGAAATAATAAATATCAAGGGGTAATAGAATAGTGTGGTGACCAGTATGGACTTTGTACTGTTTATGGAGAAGTATGGGTACAAGATACTCCTTGTCGCTGCTTGTCGCTGCGGTCACACTAATTGAGATAGTGTTCGCCGGGCCAGTAATAATTGCATACGTTGGTGGAGGAGTTTGGGGTATTATCGTCGTGCTGTTGGTGTTCTCAGCAGTCGCACTGTTCGGGTTCGTCTCGAAAAGTTATAACCTGGTTAACAGAATCTTCCACGCAAGTCTACCAGGCGATATGCATGAGGACATAGAGAAGGAACGTGAAAAGAAGCATGGAATATAGTGAAAAAAATGTTCTTATAACTGATCAACATACTTACTGTCCGATGAGACGGTATGGTGTTGACGGATATTCCCGGCTTCCGTAGAATTAAAAAGTAAATGAATCAAGCTATCGACCATGGAGGAGTGACATTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCGTAGAACTAAATAGTGTGGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //