Array 1 5871-4564 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHQY01000295.1 Leptospira weilii str. UI 14631 contig_295, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5870 29 100.0 32 ............................. ATCTGCTGAGCAATCTATTCCCACGAATTCCG 5809 29 100.0 32 ............................. AAAAGTCCGAAGACAAGAAAATCTTGAAAAAA 5748 29 100.0 32 ............................. ATGATTTCGTTCAAAACTCCTCTTCCGGTAAC 5687 29 100.0 32 ............................. AAAAAAGACGTCGTCTCTATGGAATTCGATGT 5626 29 100.0 32 ............................. GACCGCCCCTTTCTCCGTGAAATTGAAATCCA 5565 29 100.0 32 ............................. ACAAGACTTTCCGGTTACGAAACTCGCAAGAA 5504 29 100.0 32 ............................. AAGAAAAGGGGGAGCTATGCAAGTTCAAGAGA 5443 29 100.0 31 ............................. AACTCTCAAACGCAATGGGCAACGACCCGAA 5383 29 100.0 32 ............................. TTTCAATCGAGAAAGAAGTACAGCAGGTTGTC 5322 29 100.0 32 ............................. GGAGATCCTAAGTGAAACAGAGTGAGAAAAGG 5261 29 100.0 32 ............................. GAGAATGCTCTATTAGATAAATTCGAGGCCTA 5200 29 100.0 32 ............................. TGGTTGTTTGTTTGCCTTTTCGTTTTGGGTGC 5139 29 100.0 31 ............................. ACGTCGGCAATATGGTTGGCCAGGTCGCACA 5079 29 100.0 32 ............................. GAATAAAATTATGAAATTAGAACAAATATCAA 5018 29 100.0 32 ............................. GAACACGTTTTAATAGATAAATTCGAGGCCTA 4957 29 100.0 32 ............................. GAAACTCGACGTGCTCCCTAATCCATTCCTCT 4896 29 100.0 32 ............................. CGACATAAAAGGCAGTAAGAGGAAGGGATAAT 4835 29 100.0 32 ............................. TTCATTGAGCATCACGGCGGCGGAGAGGCGTA 4774 29 100.0 32 ............................. TTCTAAAATACGAGTGAGGTAATGGAACTATT 4713 29 100.0 32 ............................. GCGGAAATTTTAAATCGTCAAGAGCATTCGCC 4652 28 93.1 32 .......A..............-...... ATCTATTAAATGCGTCAACATTGACGCATTTG 4592 29 86.2 0 .......................A..ATT | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.1 32 CTTTTCCCCACATGCGTGGGGTTGAACCG # Left flank : TCATTCTTGTCGGAACACTTGAAAAATATCAGTTTTTGATCCTTATTATCCCAAAAGCCTTCTTAATTTCTGGGGTTGGTTATGATAGCAAGCGTTGTGCCGAGTTTCATCTAGCTTCATGATCTTCAAACACAAAAGTTCCCGCACATAGAAGAACTCAATTACGAGTAAGTTCCCTTAGAAACATTACGTTCTTAATAAGAAGATTTGCCATCATAGATTGACTCGAACACAAAAATCAAAAATAGATTGCAAAAAATCCGAATTTATCCTATACAAGTTTTTAG # Right flank : TTCAGTTTAAACAAAATAGATGGGCAATAGAATTGGGAAACAGAATCCGATTGAAAACTTTCAATGTAAAACTCATTCTCAGGAATCAACACGAAGAATAATATTTCACCGCGATCATTGAATGATAAAGTGCAATTTAAAACCAACCTACATTTGACTTCACTCTCTGTGCAATACCTTTAAACATTTTATGAGAATGAATTCTTCGGTTATCACATACTATGAGAATCGTAGAATCAATGAAAGATATTTCTTATACGAGAATTTACTAAAAAGGAAACTATAATCAGCAATATTTACAACATACGCTCGATAAAACGATTATAGTGTACCGCTTTTGTAAAGTTCAGTAATTACGGACAGTTGTAGGCAAAAATAACTTGCCAATTCGTTCCGTATGAGGAATTTCACGCATCATGTGTGATACGTTTGTCGCCACGCCGTCTTTTACCGGAACAGGTTCGATGATTTTTGGAAAAAATTCGAACAGGATGCTTGCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 10815-10965 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHQY01000244.1 Leptospira weilii str. UI 14631 contig_244, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 10815 29 100.0 32 ............................. AATATAAAAAACAGAATAAAAGAAGTTTTAAA 10876 29 100.0 32 ............................. TATTCTCTGGTTGGATCATCCGCTAAAAATTC 10937 29 89.7 0 ..........................AGC | ========== ====== ====== ====== ============================= ================================ ================== 3 29 96.6 32 CTATTCCCCACATGCGTGGGGTTGAACCG # Left flank : GTAAATTACTTAAAAGGATTATTCCGGATATCAAGGAGCTGATTTATGGTGGTTTTGATTTTGGAGAGAGTGAAGACTTCTCAGAGGGGAGAGATGTCGCGGTTAGCCATTGAACTGAAGCCCGGGGTCTTTGTCGCCTCCATTAACGCGAGAGTTCGAGATCGGATCTGGAAAAAAATTTCCGAAGAATGGAAGTCGGATGCGATCATGTTGTATTCGAGCAACACGGAACAAGGTTACGCTATCCGTTCTCACGGCGATCCTTCTCGCGAGATTATAGACTTCGACGGTTTGCTTCTAATGTCCAAACCCGATTCTAAACGCGATCAGAAAGTAGTCACGAGTATTTCCGACTTTTCGATGGCCACCGAAGATTCTCCTTTTTCAGATCTCAAAGGCTTTTTCAACGAAAAGGCTAATTCCCTTCTTTTAGAAACAGGTGATCCTAATGAATCGAAAGAACAGACATAATTCTTAAGATTCCTATACAAACTTTTAGT # Right flank : CTAGACTTTCCAATCCGAGACCGGTGTTGTATTTTTATTTTCTATGGTGAACCTTTTTCACATGTTAAATTACGAACTTTAACGATTGTGCAAGTAACTTAACCTCGCAAAATCCACTAAAAGATAAGCTGGAAAAATCATAACGAAGCGTATCGCAGAAGAATAAACTCATAAGACATACAAGGAATCTGAATCCAATTCTAAAAATCATTTCCTTTCAAGCTTTCTTGAATCGTTTTAAACTTTGATATAAATCTTCCTTTTATCTAAAAAACTTAAAATTCCCCACCAAACCGACAAATGAAGAACCGCATATAACAAAGATGCGAGATACGGATCTGTAATAAAAACAAGTTTAGAAAAAAACCAGGCTTTGACGCCGACCTGTTTTCCATTCTCCGTCATAATTGTCCAAAGGTTAAGCGTTCTCGCAAGTATTCCGGAACCTACAAAAACTAAAATCGCGTTCTTACCGAATACGAGTAACGGTTGAAAAAAGA # Questionable array : NO Score: 5.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-10.60,-10.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 23723-23993 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHQY01000098.1 Leptospira weilii str. UI 14631 contig_98, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 23723 29 100.0 32 ............................. AGTTAGTAGATCGAGTTAATAGTCTATCAGAT 23784 29 100.0 32 ............................. ACTCGTCGGTACTTTCAAGGCGATCCCTTCTT 23845 29 100.0 31 ............................. GCAAGAGGATTTATGGGATGATACGATTAGA 23905 29 100.0 31 ............................. ACATTGCCGCCCTGGGGATGGTTTATTTTAA 23965 29 93.1 0 ..........................T.A | ========== ====== ====== ====== ============================= ================================ ================== 5 29 98.6 32 CTTTTCCCCACATGCGTGGGGTTGAACCG # Left flank : GTTCAAAAACAATGCATTCTGCTCTATGCGCAGCCCTCATTTCTACTCAATGAATCTGACTTAGAAATTGCGATCGCCCTCACAAGTTTAAAATTTATAGATCGAAGGATAAACCTATTCTAAATTTTTTTATAATATTCAATTCATATAATTCCGATATACATAATATTATGGTAAATAATTCTTCCCTTTCTAAACAAATTTGTTCCCACCTCCTTCAAAATGATCGGTTCTTTTTCTTTGGATCCGAAATTCGTTTTCACGACGATTTGTTTCACGAGATAATAGATTTTGAAGGTTTATCTTTTATACCCAAGCTAAGTCCGAATCGAAACCAGAAAGAACCTTAAATGATTCCGTTCTTTCAAGGTTTCTTGAAGGGGACGGTTTTTCTTTTACAAACCTAATCGATTTTGTGAACAAAAACACAAGACCGATCATACCTTTAAAAATAAACTCTAAGCTGACATAGTATGTAAAATACTATACGAACTTTTAGT # Right flank : AAAAATGACGAGAATAAAAACCTACCTTCGTTAGATTGAGAATTTTTACAACGTAGAAATGATGAATGTGGCTTTAAGTTTTTGATATTTCTGTTTTGGAAAAATTTCACTTTCTCAAAGTTGAAAGATAAACTTAGAAATTACGATCGGAATATAAAGAATATATCTTAAAAGTCCTTTGTTAATCCCGAAACGAAACAACACTTTTCGGAAGTCAAAAAGTTTGAAAAAGGGAACTGGTGAATCAAAGATAATGATGATTTACTAATTTATGGCGCATCGGAAATGATGAAATCGATATGCGAAATCTTATTGTCGTTTTAATTTTTATCGCAATTACCTCTTCCGGTTTATTGGCGAAAACTTCCGATTTCAAAGGCGAATGTAAACCAAAAGAATGGATCTGTATTCTTACCCGCAACGAAAATAACAAAGTAGAATTTTACGTCCAAAACCAAACACCTTCGGGAGAATATCCTTTTACAATCTATTTCAATTTC # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 22503-23079 **** Predicted by CRISPRDetect 2.4 *** >NZ_AHQY01000096.1 Leptospira weilii str. UI 14631 contig_96, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 22503 29 100.0 32 ............................. AAGCGTCGGAGAAACGAAAATTGAAAAAATTT 22564 29 96.6 33 ............................A GCAAGGGTGGAAATCGATCTCGTTCTTGTTTGT 22626 29 100.0 32 ............................. GAAGCAAAATGAATACAATCAAAAATTGGTTA 22687 29 100.0 32 ............................. TAGCTAACAAAGCACGAATTAAAAGTGTCTTA 22748 29 100.0 30 ............................. TGGAGACTTTGACGATACTATAGAACAGAA 22807 29 79.3 32 .....................ACTTTT.. CGATCACCGCGCTGAACCGAGTCATAGAACTC 22868 29 100.0 32 ............................. AATCTTGCGCTTCATCAAAAAGAACAACATCG 22929 29 100.0 32 ............................. GTGACAAACATAATGAATCTGAAATATTTGAG 22990 29 100.0 32 ............................. AGATAGAAAGAGAATATCGCGACCGGAAAAAA 23051 29 79.3 0 ............T.....A....A..ATT | ========== ====== ====== ====== ============================= ================================= ================== 10 29 95.5 32 CTTTTCCCCACACACGTGGGGTTGAACCG # Left flank : AGATATACAAGACTTTATAGAGACAGCCCATTAAATACAAACGTGATTTGCCATATTTCTCCGGAAGTGGCTTAATCATCAAAATAGAGTTGTTGAAAAATTCTATAGTTCCAATTGACAAAACCGCTTCAATCGGTCGTTTTTATAAAACAAAAACGGATGGAGTATTAATTTTTCAACAATTCTACTTATCTCCACATATTAGAGTGTCCAAAGTTCCGCGTCTAAAACGCGGGGTTTCTGCTCAAATGAACGGTACTTTATTTTATAGGGATCAGTAATATTTTTAGACAATCTGCTTAGAGGTTTTTCACACTTTCAATTGGTTTTAAAATAAGGCATCTTACTTTCACTCTTTTCAATTTCGTTTTTGGTTTATTGGGCTTGATTACGGTTACGTTTCACACGTTCTTAGTAAGAGGCGATTTGCCATCATAGATTGACTCGAACCCAAAAATAGATTGCAAAAAATCCGGATTTATCCTATACAAGCTTTTAGT # Right flank : TTTCAGTCAAAACAAATAAAGGCGAAATAGATGAGTAATAAGAATTCGGAAACGGAATCCAATTTAGAACTTTCAACGTAAAAAAACTAAAAACCAGTTTCAAAACCTGAAAATGTAGGAACTCCCACCAATTTTAAACAAGAGGGAAAACCGCACAAAAGAGGTATAAACTCCAAGGACGTAATCTATGGGAACTCCCACATTTTTTTAAAAACTTGCCGGACACGAAAGATATTCTTTGAAGGTTTCGAGATGAACTCTAAGACAAACACAATACGGAATTAATTCAAAAAAAACCTTTTCTCAAGTTAATCCCGTATTCCAAATACGCTTTGAGACAACAGCTCATGTTCATCCAACCTTGACAGTTCATATAAGAACCGTCTAACGCAGCTTGAGATACCTTCCAACCGGATTCGGTAATTTTCACAAGAGTATTGTTTTGATCCAAGGATTCGAAAATCATTTCCGTTTTGGTTTTGTACCCGCCAACAGTTAGA # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACACACGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTTTCCCCACACACGTGGGGTTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //