Array 1 893540-888105 **** Predicted by CRISPRDetect 2.4 *** >NZ_NEFE01000001.1 Wohlfahrtiimonas chitiniclastica strain F9188 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 893539 28 100.0 32 ............................ TAAATGGCGAGGAAAATTACTTTCAATTTAAG 893479 28 100.0 32 ............................ GCTGCCTGTTCTTCAGCCTTCCCCTTTTTATG 893419 28 100.0 32 ............................ TCTAAATAATCTTCAGTCAAAAGCCCTTCAGG 893359 28 100.0 32 ............................ ATTAAATATTCACGTTCTAAGGGATTTCTATT 893299 28 100.0 34 ............................ TTGCTCGTTCCTCTTCTCGTGCTTTATTGGCTGT 893237 28 100.0 32 ............................ TGTTCAACTTGAGCAATGAATTTATGCATGGC 893177 28 100.0 32 ............................ GCGCATTTCTACATCGTTAATAACCGTATGAG 893117 28 100.0 32 ............................ TGGCTGCAATGGCACATCAGAAAACTGAGTGA 893057 28 100.0 32 ............................ TGAAGAAATTCCTGAACAACCAATGGACTTAG 892997 28 100.0 32 ............................ TCTTTGTTTTTCTTGTTAGAGCCTTCAAATCC 892937 28 100.0 32 ............................ TTTTTTTATGCCTGAATGTTTCACAGTCTTTG 892877 28 100.0 32 ............................ GTATGGGTGTCGGCAGTGTTAAACGAGATGCT 892817 28 100.0 32 ............................ ATTATAGGTGCCATGCGGGTGATGAGCGATCA 892757 28 100.0 32 ............................ GATTGCCATCCAAACTCGGGCAAACGCAGAAC 892697 28 100.0 32 ............................ CTAGACGGAAAAACATACATCACGCTCAAAGA 892637 28 100.0 32 ............................ TTTGTATGCCTCTTGATCTTCCTCTGATAATT 892577 28 100.0 32 ............................ TTTGTATGCCTCTTGATCTTCCTCTGATAATT 892517 28 100.0 32 ............................ AGCAGAAAGACCGCTATCGACCATTGTTCATG 892457 28 100.0 32 ............................ TGCTAGTTTTAAATCAGGATAACGACCTAGTA 892397 28 100.0 32 ............................ ACAAATTTTCTTTCAAAAAACTGTTTACATTA 892337 28 100.0 32 ............................ ACTTCAATTCCTACCCTGACAACTCTCAAGTC 892277 28 100.0 32 ............................ ATATTGCTTGTCATCTTTGGTTGCCATTACGT 892217 28 100.0 32 ............................ ATATCGCGATATAGGCGCTTAATTTCTCTCTC 892157 28 100.0 32 ............................ CCCACAGCAAATCAGCGGATCATGGCAATCGG 892097 28 100.0 32 ............................ ATTTTGCGCCATCACTCGGGGTGTCGCTATTA 892037 28 100.0 32 ............................ TTTAAAATCTCATCTCTTTTATAAATCACTTC 891977 28 100.0 32 ............................ TGATAAAGGGTTTATGTCTGATGATGTGATAA 891917 28 100.0 32 ............................ CTCAAATAATCGCATACCGCGCCCAATGATTT 891857 28 100.0 32 ............................ ACTCTTCAGAAGGTGCGACACAAGGCCGCTAT 891797 28 100.0 32 ............................ TAAGGCTCGTAGTTCTTTTGATCACGAAACTT 891737 28 100.0 32 ............................ ACAATCAGCTAAATCATCAATCTGGCAATGAT 891677 28 100.0 32 ............................ ATTGCCCTGTTTGCCAATTTGATTGTGCAAAC 891617 28 100.0 32 ............................ TTAACGCGCGTGAAATCATGCTGAATGCCATT 891557 28 100.0 32 ............................ TTATAAGTAGCAAAGCCTAAGCCGATTGCCAT 891497 28 100.0 32 ............................ ATTCTGATTCATTGTACTCATCAATTTTTGAT 891437 28 100.0 32 ............................ TCAAGTTTTTTCATGCACTTTTTACTATGTAG 891377 28 100.0 32 ............................ TGGCAAACATCGGCGACACAATGGTGACAGAC 891317 28 100.0 32 ............................ ATTATTTTCAAGCTTGCCGTTAATCGCAACAT 891257 28 100.0 32 ............................ AACCGCGTGAGCAATGGCCAAAGACGATAAGC 891197 28 100.0 32 ............................ TTGCAGCCCTAAGATGCGCTCTCTTCTCATGC 891137 28 100.0 32 ............................ TGCCGTTGCGTTTACTGCATCTTCTTCGTAAT 891077 28 100.0 32 ............................ TATTACCTATCGCAGAACTTTACCACGCTTTC 891017 28 100.0 32 ............................ CTTGACGCCCATTATTTTTGCTCCAAAAGCGC 890957 28 100.0 32 ............................ ATCCACCACGGGTGGGCTTATCGTTGTCAAGA 890897 28 100.0 32 ............................ TGACAAACGAGTCACTGCCCACGGATGCACTG 890837 28 100.0 33 ............................ ATAACAATGCTCAAAAGCAATATGCGCTGTTCT 890776 28 100.0 32 ............................ CATCCAATTTGTGAGCGCATCTAAAAACACGC 890716 28 100.0 32 ............................ AGCTTTGTCATACTCTTTTTCATAGTCTTGAC 890656 28 100.0 32 ............................ AGACCCGAGAGTTTTTAAAGCAATCATCTATC 890596 28 100.0 32 ............................ ACCAACGGAGGATGGGATTGTAAGAATTTGGA 890536 28 100.0 32 ............................ ATCATTTTTAACAACTGCATCTTTCGGGTATC 890476 28 100.0 32 ............................ ACCAGAGCGCATTACAACAACTGACTGGGCGA 890416 28 100.0 32 ............................ GCGTTCTATCGAATAGATCAGCTAGATATTCA 890356 28 100.0 32 ............................ TTTTTTTTTGGCTTGAGTCGCCAGTGCTTTGC 890296 28 100.0 33 ............................ CAATTTTATTAATCTCATAGATCAATTCTTTGT 890235 28 100.0 32 ............................ TTTAAAATTTCATCTCTTTTATAAATTACTTC 890175 28 100.0 32 ............................ AAACGGGTTAGACGATGTTACAAGTGATAGAC 890115 28 100.0 32 ............................ AAAACTTGGCTGCGTGACGACTACAAAACGAA 890055 28 100.0 33 ............................ CGTCTGGAAAATAGAACCCCCCAGATTACTAGA 889994 28 100.0 32 ............................ GGTGTCTAAATCATCACGCAATAATTGAGATG 889934 28 100.0 32 ............................ ACACAGCAACACAATCGAAACAGTAAAAAACA 889874 28 100.0 32 ............................ TTGAAGCGATTAGAGGCACAGTTGTCTTTGCT 889814 28 100.0 32 ............................ CTATCCTTTTGAGTCTAATTAATGGGTATTGC 889754 28 100.0 32 ............................ TACATAGTTACCCAATACCCCTGTTGTCCATG 889694 28 100.0 32 ............................ GGTGACCAGGTGGGGCTATAAGCCCATTTTTG 889634 28 100.0 32 ............................ ACCGATATTTGACACTGTATTGAGGGCTGCCG 889574 28 100.0 32 ............................ TACCAATTTTTAAGTGATTCAACTGTACTTCT 889514 28 100.0 32 ............................ GATGCGGAATCACTGATAACGCTGAATTTAGT 889454 28 100.0 33 ............................ CGCCAGACCATGCATAAAATTGTAAAAAAGTAT 889393 28 100.0 32 ............................ AAGAAGCCTGAGCCGAAAAAGCAAGTGAGCGC 889333 28 100.0 32 ............................ GATTGGCTCCGGTGCTTTCTTGTCTTTTTTTG 889273 28 100.0 32 ............................ TGATTAAAAATTAATTCTTTTAACGCTTTGTA 889213 28 100.0 33 ............................ CCAAAGTCCACTGTTACAATGCCGTGTTTGTAA 889152 28 100.0 32 ............................ GCTCTTTTGTATCACATCAAGCTGATCTTTTA 889092 28 100.0 32 ............................ ATGACCAACATACACCAATTCTTCTGACTCTT 889032 28 100.0 32 ............................ TCGATGGAATCAATCCCCAAGTGCTTTGGCCA 888972 28 100.0 32 ............................ TAACGATAGACAAAGACAAGAAAGAGCAACTT 888912 28 100.0 32 ............................ CGGATCGGGTAAAACTTTGTCAGCAATCTCTA 888852 28 100.0 32 ............................ TAGTTGGGAGGGCGATATACCCTCCCCGTTAC 888792 28 96.4 32 ...........T................ GCTTACAATAAACCCTTTTGGCACAACTGTGC 888732 28 100.0 32 ............................ AATACCAAAACATTGGGATTACATCGATGTCT 888672 28 100.0 32 ............................ ATTTAGTTTTTTTTTGTTTAGTAGCAAATCAT 888612 28 100.0 32 ............................ GCTAGTTAGAAATGACTTCACAGGCGATAAGA 888552 28 100.0 32 ............................ TTCACATCGTTTAACAAAAACGGAACGGGCAG 888492 28 100.0 32 ............................ ATAGGCAATAACATTTTTATAACAAAGAAAGT 888432 28 100.0 32 ............................ GCCGATTTCTAACCCTTGTTCCAATGTGATAA 888372 28 100.0 32 ............................ ATTTAATATCGACGGCGTAGTCGAGGGTATGT 888312 28 100.0 32 ............................ GATCAAATAAAGATGGGCGACCGCCTTTATTC 888252 28 100.0 32 ............................ TGTATCAACTAGTGGCTTATCGCTTGCTTTGC 888192 28 96.4 32 .............C.............. TTGTGTTGCAGATAAACGGTTGGCGTATTTGC 888132 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 91 28 99.9 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : TTGAATGCAGGTTCGTGGCTGTCACGCTTGACGGATTATGTGCACATTTCTTCCATTAAGCCGGTGCCTAATCGTGTGACGCATTATGCGATTTATCAGCGTAAACAGGTCAAAAGCAGTGTTGAGCGTTTAGCGCGCCGTTATGCTAAGCGTAAGCATGTGACATTTGAGGATGCCATGGCACATTTGAATGGCAAAACGCCAGAATATTGTGATTTGCCTTATGTTCAGATGAAAAGTGAAAGCACGGATCAACGTTTTCATTTATTGATCCATAAAGTAAAAGTGACAGCACCCACGGAGGCGGCAAACTTTACAACGTATGGCTTGAGTCATCATGAACAATTGTCTGCTGTCCCTGAATTTTAACCAATGTTTTTTGCTCTTTAAAAATTTGGATAAAAATCAGTAGCTTATAAAATAAGGAAAAATCATTGGTCTTTTCAGGTAAACTACCTGCGATCAGTGATTTTTCCTATCTTTTGTGCCGAAATTTTACT # Right flank : AGTGGTTCCATGGTGAATTTGGAAAGTTTGCGGTTCACTGACTAAAAATTGAGAGTTTATAAATGACATTACTAAAAGTGTTGGTACGACCTTTGTTTGTGTTGAAAATTCATTCATCACATCCTTGCCAGTGTTTGCAGATGCCAATAGCAATACCGGTGGCAGCACACAATGGAATAATTCAGTGAACATTAAAATGTCCATCGATATGTATGACAATGGCGTGATGGACATAGGGGTGAATGCAGAAATTGAAAATAAAAATGAAATCTCAGACAGATTTAAACATTATTGTGGCTATGTGCTTGGGCGTTTATTCAGTGGTCAGTTGTATAAACGCGGCTGGGTGAATAATGAGCATTTTGGTACAAGCAGCCATTAAGACTGTTGCATTTGTAGCCATTGATCAAGCGCGTTGGCAAATTGTTGACGCTCTTTTTGTGATAATGGCGGCGGACCTGAAGTTTGTACGCCACTTGAGCGTAATTCATCCATAAAGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1019435-1018245 **** Predicted by CRISPRDetect 2.4 *** >NZ_NEFE01000001.1 Wohlfahrtiimonas chitiniclastica strain F9188 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================================================================================================================== ================== 1019434 27 75.0 174 .......ATG...A.C...-....T... GGTTGCGCGGTTGCAGGTGCGATTGAGCATGCGAATACTTAAGACCTTTATGGACTAATCTTTAAAAATTTGGATAAATATCAGTGAATTACATGTTATTGGGAAAAGATTGGTTTTGTGGTCAAATATCAACAAAACCATAATGATTCCAATGGCATTGTGATAGTTTTTACT T [1019431] 1019232 28 100.0 32 ............................ TTTACGATCTCGATTTGGTGCGATGCCTTAGG 1019172 28 100.0 32 ............................ TAAAACTTTAGGTGGTGCGATATTCAAAGACA 1019112 28 100.0 32 ............................ TGAATTACACCCCGTTGAGAAGCTTCTCGAAA 1019052 28 100.0 32 ............................ ACTACAAAAAGGATGGTAGAACGTATTATATT 1018992 28 100.0 32 ............................ ACTCTGTTTTCTCTTGCTTTTTGCCCTGCTGA 1018932 28 100.0 32 ............................ AATTTCTTATTCTGTTGAAAATCCTAGCCGCT 1018872 28 100.0 32 ............................ AATTGGATGAGATATGCATCCGTCATTACTCC 1018812 28 100.0 32 ............................ TTGACCCCAACCCTGCTTTTTCAAAGTAAAGT 1018752 28 100.0 32 ............................ AATGGCGGTTCAGTGTTCTTTTTTGATGTACT 1018692 28 100.0 32 ............................ TAGCGCTTGAATTTCACTCATACCACCTTTTG 1018632 28 100.0 32 ............................ TTCAATGCTGCCATCTCTTCTGACAATACGCG 1018572 28 100.0 32 ............................ ATAATAAAATGCTAAGATTTTTTGCGATAAGA 1018512 28 100.0 32 ............................ ACCGGCGTATTTTTGTCGTGATAGCGTGCAGC 1018452 28 100.0 32 ............................ TTGACGGATCACATCGCGCGCAGGCATTGAAC 1018392 28 100.0 32 ............................ GCATGAAAAGCAATGCCATGCCCACCTGTTTG 1018332 28 100.0 32 ............................ ACAAGAAAAACCGCCTAAGCGTAAGAAAATCA 1018272 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ============================================================================================================================================================================== ================== 18 28 98.6 40 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TGTATATATAACATATATCTATAGTATGTTTATTGGATGTCTAAAATCCTAGCGTACTTTTTCACAGAGGTAAAGTGCTGATCTTTGCCTTTATGAGATTTTTTTGTAAAATTTTATTTAATGGATTGAAATAAAAGCATAAAAAAATTATGTTATGGGGGGTTGAACATATTTAAGGAGATCAATATGAAAAAATTATCAGTATTGCTATTGATGGCAGTAGGTTTGGTAGGTTGCGCATCTGTGGAGAAGGATACAGTGGTGCATGATTTTACTGCATATGGCAAGCTCAATGAGCCTTGGCGCATCGTGGTCAAGCATGATGATCAGTTAGAGATTGAAGGGGTAATGGTTCGCGAGGGCACATTGAAAGTGACGCGATCGGCATATGCAAAAGGTGTTGAATTCTCAGGGGATTATGATGGGCAGCCATTGACATTAAACATCCGCTCATTGAAGTGTAAAGACAGCAATGGCGATGAAACAGACTTCACTGCCAC # Right flank : ATGATGTCACGTGCTGCACCGGTCTTGCGGCGCCTCTGTACCGCGCTCAAAAAAGCTTGGGATGAGGCGAAGGCGATCTTTAAAATAGATCGCTGCGCCCGCTGCCACAATGACAACGGTGCACATGGCAAGGGTGACAATTAATTTAATGCGCATGATCATTCACTGTGGCTTGCGCTTAGCATTTCGCGCGCATGATTAAAGGTGGCTTCTGTGAGTTTAACACCGCCAAGCATGCGGGCAATCTCATGGATGCGCTCATCGTTTGACAGCTTTTTGATCTCTGTTTCCGTATGATCTTTTGATTTGGATTTTGACACTGCAAAATGGTGATGCCCAAAGCTCGCCACTTGAGGCAAATGCGTCACACAAAAGACTTGGCGACCTTTGCTGAGTTCTTGCAGATGCTTGCCGATGATCTCAGCCACCGCGCCGCCAACGCCTGTATCCACTTCATCGAAAATGAGGGTGGGCAGGGAAGACTTCATACTTAAAATGAC # Questionable array : NO Score: 5.40 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.78, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //