Array 1 198210-194110 **** Predicted by CRISPRDetect 2.4 *** >NZ_WDPD01000001.1 Bifidobacterium dentium strain BIOML-A2 scaffold1_size542408, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 198209 33 100.0 34 ................................. ATATAATAAATGGGGTGTGATGCCATGACCACAC 198142 33 100.0 34 ................................. CTCGTGATATTGTCCGGCCCAGACGATGTTATTG 198075 33 100.0 33 ................................. CGTACCAGAATAGAATCCCTTGCTCATGGAGTC 198009 33 100.0 34 ................................. TGGTAAAGGTGGATGATCCTGCCCTTGAGCCCCG 197942 33 100.0 33 ................................. TGCTTGACCGGATCGCCGTCGCCGGTCTCGTCC 197876 33 100.0 34 ................................. CTCCTGCGGGAGTCCTTCGTGCCGGACCGGTCCC 197809 33 100.0 34 ................................. TCCGCGTTCCCTGGGGCGGTGTCGCCGAGGGTCG 197742 33 100.0 34 ................................. CAATGCGCGACCCTGTATTTGGCGATCGTCCTGT 197675 33 100.0 34 ................................. ATCAGCCCCTGGCCGGGCATCACGCCGGTGAAAT 197608 33 100.0 34 ................................. TATAAGCATCGCGGCAGCGTCACCCCGAACCCGT 197541 33 100.0 34 ................................. GTGCACGAGGGTACAGCGCTTGCCGGTGTAGGTG 197474 33 100.0 34 ................................. GATAAGACGACGGGCAAGCAGGTGCCGAACAGCA 197407 33 100.0 34 ................................. GATGCTACCGCACGCATGCTGACTTTCGACGCCA 197340 33 100.0 33 ................................. GTCGAAGAAGATTATGGAGACTTTTGGAAGCGC 197274 33 100.0 33 ................................. AACAGCAACGCCCCGCAAATCAACATGAGCGGC 197208 33 100.0 33 ................................. AAGGACAAGGTGCAGGCGAGCTCCGACGCCATC 197142 33 100.0 33 ................................. TCCACCTGATACAGACGGATATACACGTCTGCA 197076 33 100.0 34 ................................. ATCGAAGTAGACGCGGGTACCGAAAGCTTCGTCC 197009 33 100.0 33 ................................. CCCTTCTCCACGACGCCTTGACCCTCTACTCGA 196943 33 100.0 33 ................................. ATTAAGCGCGACTAACGCACAACGAAGTCTTTT 196877 33 100.0 34 ................................. GTAATCAGATGGCGGAAATGCAAATACGCAAGGA 196810 33 100.0 34 ................................. CTCCAGATCTTCCGCAGAACCGACGACACCGACG 196743 33 100.0 33 ................................. AGCGAAGGACTCCGGACAATCCGCCACGCACGC 196677 33 100.0 33 ................................. TTCAGGATGTGCATGTGAGTCTCCTTAGTTTCT 196611 33 100.0 34 ................................. CACATAGGCGGCAGTCTCAGCATCATCGGGATAG 196544 33 100.0 34 ................................. AGGTCAACAGTCACCCGCACCCCCTCCATCGCAG 196477 33 100.0 33 ................................. CCCTTCTCCACGACGCCTTGACCCTCTACTCGA 196411 33 100.0 34 ................................. ATCATCTGCTGTTGCCTTCCAATAAAATAAATGA 196344 33 100.0 33 ................................. AAGGTGTTGAGCGAAGCCGTGCGGTTGCGTTGC 196278 33 100.0 34 ................................. TTGACAAGGTACGTTTTGAAGACGCAGCCGATGA 196211 33 100.0 34 ................................. TTTTTTGAAAGGATAAGGCAATGAGCATTCCACT 196144 33 100.0 33 ................................. AAGATGATTGCGCATATATCGCCAAAAAAGCGA 196078 33 100.0 34 ................................. CTCTTCCAAGTGGCGTTTTATCGCAATGACCTGT 196011 33 100.0 34 ................................. TGGATCCCGAACTACGCCGCACAATATGCGGACC 195944 33 100.0 34 ................................. CGACTCTCACAATGGGACAAGAAGACACATGCTT 195877 33 100.0 33 ................................. AAAGCCATCCCCATTCACGGGGGTGGCTTTTTT 195811 33 100.0 34 ................................. TCTTTCTTACCGGGTACGGGAACGGGAACGGGGC 195744 33 100.0 33 ................................. GAGACGGCAACCGTCCGATATTTGCGTTGGGCG 195678 33 100.0 33 ................................. ATATCGTCATTTTCAGTCCAACTGACCTATGTG 195612 33 100.0 33 ................................. CTCATCCAATGCCTCTTCGACCCGGATCGCGTA 195546 33 100.0 34 ................................. ATGTGCCCAAGGGTCAACTGGCCATACGGGGTCG 195479 33 100.0 33 ................................. CGGACAGGTACCGGCATTTGAAGAAACTGCTCA 195413 33 100.0 35 ................................. CCCTACTTGCGCGACGAGTTCACCGGCGTGCTCAT 195345 33 100.0 33 ................................. TCATCCACATGTGCGGGGCAGAGCGTGTAGATG 195279 33 100.0 34 ................................. CACAAAGTCGCGGATGTCCTTGTCCTTGATGCCG 195212 33 100.0 33 ................................. AACAAGGCGCTTGTCAAGCTGAACACGGAAGGT 195146 33 100.0 35 ................................. TTGGAAACTGCGGGTAGGCGGAGCCTTTTCCGTTC 195078 33 100.0 33 ................................. GCGCTCTTCGGACTGCACGCGACAGGCAAGAAC 195012 33 100.0 33 ................................. TGGTCGGTCTGGGTCAGGAACGGCGCATACCCG 194946 33 100.0 33 ................................. ACCATCAGCGTGCTCGACAGGACCCTCACCTAC 194880 33 100.0 34 ................................. TGGAAGGCAACGACAGATGAACGCATTCTCCATC 194813 33 100.0 35 ................................. ACCTATGTGCGCGGCCAAGCATACAAGAACCAGCT 194745 33 100.0 33 ................................. GCTGTCGATGACAGTCTGCGCATGGGTGCGATG 194679 33 100.0 34 ................................. CTCTGCAACCCTACGGGGTGACGTCCCCTCGAAA 194612 33 100.0 34 ................................. AGCTTGATTTGTCGGTAGTCCGATAATCCAATAA 194545 33 100.0 35 ................................. TCATGTTCCATTGCCCTGAGGTTGAGGATAGCCCA 194477 33 100.0 34 ................................. ATCGATCGCTATTGCGCCACGACGATCGACTTCT 194410 33 100.0 35 ................................. ATGAGCCGTGAAGTCAAGGCGAAAGTGCATGGAGG 194342 33 100.0 35 ................................. TCGAATTCGTCTACTCCGGTAGCCCGTGGGTGCCG 194274 33 100.0 34 ................................. AAACGAATACCGGAACCGACATCAATATCATCAG 194207 33 100.0 33 ................................. ACGTTGGTCTGCCCGTTGAATCCCGACAGGGAG 194141 32 84.8 0 ....................T.A.-...A...C | ========== ====== ====== ====== ================================= =================================== ================== 62 33 99.8 34 GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT # Left flank : CTGCGGGGAAGAGACGGTTGCGTAACGTTGCGAAGACATGTATGAAATATGGGCAACGGGTGCAGAATAGCGTATTCGAGTGCTCGGTCACTTCATCGGATTATCTAACTTTAGTAAATGAAGTGATGAAAATCATGGATCAAGAAAAAGATAGCCTGCGCTTATATAAATTAGGGACAAAATATTCTGAGAAGATTGAACATTATGGTGTACAGCGGCATCTTCCTGTAGATGATGTGATGATGATTTAGACGCCGAGGCCTGTCGTTGTGCGAAGTGGAAGCTCTCATCGAATAAGGCAAGCTTCGCACCTGGATGGAACTTGGAATCGAAAAGTAAGTCGATTTTCCTTGGCTGTTTGATAATTTCAGAGAGAAGAATCGTTATTATTTTTTGGTAGAGTGATTAGAATAACGGGTTTTGACTTCAAACCCTGCTACTCTTGAACTTGTACGAAGGATAGATGTTCCACAATGTGAAACATGCTGTCCATCTGTGCA # Right flank : ATGATGGGAGCGGCCATGGGATTGCGTGAACGGCGTGAGCGTTGCGGGTTGACGTTGCTCCAGTTGGAAGCGTTGACCGGTATCGCCTTCACGCGGTTGAGCACGTTGGAGTGCAATGCGTCCGAGGCTCGCAACATGTATTTGGGTACGGCTCGGCGGATTGCCGACGCGTTGCATTGCAACGTGTTGGACTTGTATCCGGATGAGGATGCGTGGCGTGGCGGCGTGTCCGCCGGTGTGACCGGGTTGAGGAGGATTCGTCGGGAACGGCATTTGACGCAGCGGATGCTGTCAGCCTTGACGGGTATTCCCCAGCCTAATATTTCTTGGTTTGAGACCGGGTATCGTCCCGTGTCTCAGATGTATTTGGATACTGCGCGGCGCCTGTCGGAGGCGTTGCAATGCGACCCTGTTGATTTTCTAATTGATTGAAAGGATATTGTGATGAAGGCTGAGGTTGTTATTGTTACGAGGTTGGAGCGTCATGGCGGGACGATGCT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.10,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 188019-188195 **** Predicted by CRISPRDetect 2.4 *** >NZ_WDPD01000003.1 Bifidobacterium dentium strain BIOML-A2 scaffold3_size328510, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== =========================== ================== 188019 24 100.0 27 ........................ GTAAAACAGTCGAAACCACGTTGCGAA 188070 24 95.8 27 .............T.......... AACAGGGTGGCGGATCCGAGGTGCGGA 188121 24 91.7 27 ..G.T................... GTCAGGACGTCAAAACCGGGGCGCAGT 188172 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== =========================== ================== 4 24 96.9 27 TGTCCGATTCTGGAGAATCGGACA # Left flank : GCAGACGCCCGCCGGCTTGATGCGTCCGAAAGCCCCGCGCGCAGGTTCGCGCATTCTATTGGAGCGGATTACGCCGATTTGGAGTCGTTTGGGATTCCTAAGCAAGGTTACTGCGCGCAATATCTTCCGTTTCAAGTCGCGCCTGGTCATGACGGTCGGAGGCGTTGCCGGATGCACGGCGTTGATCATATGCGGGCTTGCGATCAACGACACCGTGGCGGAACTTGGCGTCAAACAGTATCGCGATATCTACCGATACGATGTGATGGTCGTTGCGAACGATACCGATGCGGATGCAATGCGGGCGAAGTTGCGAGCGGACGGGCGTACGACTTCGACCATGGACATACGTGTCGAATCCGGTGATCTGGCGAACGATGAGGGAAGCGAGGGCATCCAACTTGTGGTGGTGCCCGAGGAGCATCTGGATGAACTGGGCGAGATGGTTACGCTCAAGCCGGTCGCATCCGGATGGGATGGTGTGCGCAAGTTCTTCGGAC # Right flank : AAACGAAGCGGCTCGAAGGCGGTGTTGGGCGACAGTGGGGTGATCGTGTCGCAGTCGGCGGCCAACGCTCTGGGCGTTAAGGCCGGCGATACGGTGAATCTCACCAACGGCGATGGCATTCAGGCCAAGGCCAAGGTGAGCGAGGTGACGCGTAACCTCATAGGTTCCGACATCTACGTGAGTGAATCGTATTATGGCAAGCTGTTCGGTTCAGGGTCCGGAATGTCCGATTCTCCAGAATCGGACAAATCGGATTCCGGCGGCTCCTTGACCTGGAACGCCGTATACGCCAAGCTCACCGGATCCGACGATGCGCAGATCGCATACGCCAACACCCTCGAAAAGGATGATTCGGTGATGAAGACGGTGTGCTGCGCGGACATGGCCGCCAGCTTCAAATTTGACCTCATGGGCGCGGTGGTCGCCTTGATCGTTGCGCTTGCGGGCGGTCTGGCGCTTGTAGTGCTGTTCACGCTTGCCAATACGAATGTGTCGGAACG # Questionable array : NO Score: 2.55 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.15, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTCCGATTCTGGAGAATCGGACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.00,-3.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //