Array 1 268156-270171 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHDUO010000008.1 Streptococcus thermophilus strain Brie28 Contig_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 268156 36 100.0 30 .................................... CTTTCTAAGTTGAATTAAATTCAAGTTTTG 268222 36 100.0 30 .................................... TCGCTACTATGGTTAACGATGAGGAACTCT 268288 36 100.0 30 .................................... AGCAACTTTAAAACTAAAAGAGCTACTTGA 268354 36 100.0 30 .................................... AAAACCCTACACAGTGTGTGAGATGTGTCA 268420 36 100.0 29 .................................... CGTATCGAAAACGGCGATAATCCAACAGT 268485 36 100.0 31 .................................... CAATACCTTTTTTTAATTCATCTTGATAAGT 268552 36 100.0 30 .................................... TTAAGAACAATATCATCAATACGACTTTCA 268618 36 100.0 30 .................................... CATCTATCAAATTCAAATTCGGATAAACTA 268684 36 100.0 30 .................................... GACTTATCTTGGAAGGTAGTGAAGGCACTT 268750 36 100.0 30 .................................... TCCTTGCCATCTGCACTGTAAGCCCAAGCA 268816 36 100.0 30 .................................... TAGTACGCATAATCAATTCATCAAGCTTGA 268882 36 100.0 30 .................................... GTAGTGACCCAAAATTCTATGACCTTGAAA 268948 36 100.0 30 .................................... AGATTGTGGTGCTTACGGAAAATTCCTTGT 269014 36 100.0 30 .................................... TGGCAAGAAGTGTAAGAGATGCAATGGATA 269080 36 100.0 30 .................................... TTTATTATCATTATTCTTCTTCCCAAGCGT 269146 36 100.0 30 .................................... TTTTATAGAATTTGGTGGTGAACTTTTTCA 269212 36 100.0 30 .................................... AATGGGTCACAGATTGCCATAATAAGGAGG 269278 36 100.0 30 .................................... CCGAGGTCACTTTAGAACCCACAAAATAAG 269344 36 100.0 30 .................................... ATGAGAGAACACAGTATAGACCCTGATACA 269410 36 100.0 30 .................................... CAGTATTAATGAGGTTTGGGTGGTCATTCC 269476 36 100.0 31 .................................... CCATACTCTCTATCAGTTCATTTAATTCTTC 269543 36 100.0 30 .................................... TGAGAGTGTCTGATGGATTTATTGGTAACC 269609 36 100.0 29 .................................... ACCTCATACATGGGGAAAACTTGTAAGTA 269674 36 100.0 30 .................................... TATTTCACGAATTTCTACACTTTTCAACCT 269740 36 100.0 30 .................................... CTGAAACCTTGTTTTGAAGCGCTTGGAAGT 269806 36 100.0 30 .................................... GTCAATTGATACTGCAATCTCTTTAACATT 269872 36 100.0 31 .................................... ACTTCAATATGGTCAACATCTTGATCACCGA 269939 36 100.0 30 .................................... TAATATGTCGCTCTACTGATTCCAAAACGG 270005 36 100.0 30 .................................... ATGAATTACATTCATGATTTTATCGAGTTT 270071 36 100.0 29 .................................... CGTGCCATTGTTTCGGTCGGACGTGGGCA 270136 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== =============================== ================== 31 36 99.8 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : ATTGATGGCTTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAACATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGTTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGCTGTTTCATTTTAGTTACCGTATAAGATGTTCTCAGACACCTGATAAGGAACTATTACAGAAATTTTTAGAAAGTAAGGATTGACAAGGACAGTTATTGATTTTATAATCACTATGTGGGTATGAAAATCTCAAAAATCATTTGAG # Right flank : TTTGATTCAACATAAAAAGCCAGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAATCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCTTGGTCTGTGGATCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTGCCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACATCCCTTGTACTTGGCTAGCTCCTTGGTCATTTCCTTCTCATAAGCTGATGAGGTGAAGTAGGAGCTGGTGTCCGGCCTTAAGTACTGGGTAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //