Array 1 642-345 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHBBS010000042.1 Loigolactobacillus coryniformis subsp. torquens strain 14I Contig_42, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 641 32 100.0 34 ................................ GACCAATCCTTTATTACAGGCCATTAAGGGTGTC 575 32 100.0 35 ................................ AGCAGAAATCAGTTGCCAATAACGATGAACTGCTG 508 32 100.0 34 ................................ ATCTAATCGCACACCCTCATTTGGCTCACTTGAA 442 32 100.0 34 ................................ ACGCATATCATTTTGCGCGTTACACCAGCGTATA 376 32 90.6 0 .................C....A......T.. | ========== ====== ====== ====== ================================ =================================== ================== 5 32 98.1 34 GTCGCACTCTATATGAGTGCGTGAATTGAAAT # Left flank : TCATGTAACAGTGCTGCTAATCCGGCCATATGACCCAAGTTTAATTGACGACCCAAACTTTCAGCAATCTTTTGACAATCTAATAAGTGATCCTTCAATAATTGATCAGGCTGTCGCTGATCGTTATCCATAAGCGGACCAGGATGAGCAATAAATTCCATTTTAGTCGCTTCCTTTTTGATTTAATTATAAGCGATTTACGATTAAATCGTTACTAAAAATAGATACTTAATTTGGCAAAATTAATATATGCGCTAAATATATCTAGTCACTTTTCTTTTAAGATGATAAAATTCTAGTGATGATATTGATTCAGTTCTCCATATCCACAATAGTGCGAACACCTAGCACACACAATTTTCTTAGGTATTTCGCACCATACTTTCTTTCCTTACCACTATAAAATATGTATTTCCTCTGTAATTTTTGATATATTTCTCCTCTGAGTTAATATTGTCCACAAAATATAGATAATTCACTCATTTTTAGCTATATTTTGC # Right flank : TTTCATTGCTAAGACTATAGAAAAGTGAGTTAAGCTTTTAAATGAAGATAATAACTACAGCTGTGGAGCAGTTAAAAGTCAAATACTCATCTCTTAACTATTAACTAAAGGTTGAAAGTATCAAAATAGACCGTAACCATTGATGTCAAACGGTTATGGCACGATATATTACTAGTTTCCACTTCATTGAGCATTACCGAGTAGCCTGGCCAGGCTATTCGGTAATGCTTTTATAAATTCGTCAAAAATAATAGTTAATGTTTCAACCGCCATGTCGAGTTTTTCACCTAGACCAGTAATTGTTTGTATCAGCCAATTCAACGCACTTACTAACTTAATATCAGG # Questionable array : NO Score: 8.96 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.61%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 7378-7609 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHBBS010000009.1 Loigolactobacillus coryniformis subsp. torquens strain 14I Contig_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =============================== ================== 7378 35 100.0 30 ................................... CTCAATCTGGCCCAGCAATTGAAGTCTGAA 7443 35 100.0 31 ................................... CACACTTGATAAGGATTGTGTCGTGATTAAA 7509 35 100.0 31 ................................... CTGGATCCAGGTGTAGTTGCCGATCTTAGCC 7575 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== =============================== ================== 4 35 100.0 31 GATCTGTTTTAGCTGAAAACTGAAGGAATCAATAG # Left flank : AGCAATGGGTCACATTTTTGATCGTCATAGAATATATTCCTTTCTTATTGGTATATCAAATGTTGATAGTATTTGCTTAAGGTGCCTATGTATCAATGAATTAATCATATAGGCCAATATGATAATTAGTGCAAGCGATATACCTTTATATTGGATAAAACTGATTTGAAGTCCTTTATGCTTGTTTATGTTCACACTTGATTAAACGTAAATAAATTTCAGAACTATATTTTATAGTTGAGCAATTATCAAAGAAATTGGAAATGCGAAGTGTAGGATTAGTTATATAATCTCATTATTTATGTGAATGGCAATTAAAATAGATGTCCTTAAATGTACCAGAAATATTTTATCTGAATATGTAATTTAGTACCACTAACTGTGATTTTTGGGTGTTTTAGTCCGAATTAAGTTGATGAGTAAGATTAAACGGTTGGTTACTTTTTGGACATAGAAAATAGTCCAGTATCCGTGTGATATCGGACTATCACGGTGTAATT # Right flank : GTAATTGGATCCTAGTTTACTAGGATGCCAGTAAAGCACTAACCCCAGTGGGATTTATCCTGCTGGGGTTATCTTTATGCCTGCACACAAAAAAACGCCGCTAACGGCGTTTTTGCTTCTCCGTTTCTGGTTGTGCAACCAGCCGCCGGAACCCCCAATACCCGACCAGCACCAGAATCAGCAGATTGATCCCTAAATTGGTGTTCTGCAACAGCCGCGCACCGCCGTAGTTAAGTAGTCGAATCACAGTGACGACGCAATTACCAGCCAGCAACCACTTCGTCGCCGTCAGTAGCCGCTGCTCGCGCAGATCGTGCACCGGCACATAATCCAAAATAAAGACGATTCCGATTTGTATCAATAAGACTAACCAAACTTCCATAGCGCACACCTCGCTCAGGTCTTTATATTAATTATAGCGCTTACACAAAGTGTGAAGCAATCTTTTTCCAGGCAAAGTTGTTTACCGCCGCTGGTTTCCTGTTATGATAGAGGTAATG # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATCTGTTTTAGCTGAAAACTGAAGGAATCAATAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.30,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 3171-331 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHBBS010000098.1 Loigolactobacillus coryniformis subsp. torquens strain 14I Contig_98, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 3170 28 100.0 33 ............................ TTGATGACACTGAGTTGACATACAGCGGTGCTG 3109 28 100.0 33 ............................ CTTTGCTGTTAATGGTGGTTTTATTGTGCATAA 3048 28 100.0 33 ............................ TAGACGTGTCTTGGCTTGTGCTTGCAAGTTCAG 2987 28 100.0 33 ............................ TATATGAGCAATCAGGAACGCATTCAAACAATT 2926 28 100.0 33 ............................ TGATACGTTCTGACTGATACTTCATGACGCCAA 2865 28 100.0 33 ............................ TATTGATGAAAATGGCATCGTACGTTTCCGCGA 2804 28 100.0 33 ............................ CTGTGCGGTCAATTGGGTGTCAATACCTTTTAT 2743 28 100.0 33 ............................ CATGATCTTTCGTCAATCAGCACCACCAAAATT 2682 28 100.0 34 ............................ TAAACGATCATGCCTTTTTTGTCACACAAACAGA 2620 28 100.0 33 ............................ TAGCTGCCGAGTTCCTTAAACACGGTGTTAAGG 2559 28 100.0 35 ............................ CCTTCCCAGTATTAAAGCCAGAGGAATACCAGCCA 2496 28 100.0 34 ............................ CTGACCGGGTACTTAAGATTATGCCTGACGGAAG 2434 28 100.0 33 ............................ TAGGCCAAACGCAATCAAACCACCGCCGGCTAA 2373 28 100.0 33 ............................ CGCCACGGCGTCAATCGTCGAACAATTCGGCCT 2312 28 100.0 33 ............................ CTCGGGTTTTATTTCGAGCGCAGCAATCTATCA 2251 28 100.0 33 ............................ CGGGGCTTAGATAAAGCAGACAGTAGCAAGCAG 2190 28 100.0 33 ............................ AAGCAGATGGCCGGTAAAGGCGTTACGGTTAAA 2129 28 100.0 34 ............................ TGTTCCCCGATTGGGGTTTTCAGGTTCACCTTGG 2067 28 100.0 33 ............................ TGATGCCAACAATCTGGTCGTGTTTTTCTTGCT 2006 28 100.0 33 ............................ CAATACACCGGCTCGTAGCTCAAACGTTTATTC 1945 28 100.0 33 ............................ TACAATATTGGCATATGACATTCCTGCAGGGTC 1884 28 100.0 33 ............................ TGATTGAAGGTCCTAGCGTAAAATGGCTGATTA 1823 28 100.0 33 ............................ CGACACTGGTTGATGCGATTACCGATGGCAAGC 1762 28 100.0 33 ............................ TGTTAGAGAAATATCCGTGTTTTTTCGTAAATT 1701 28 96.4 33 .........A.................. TAAGACTGGTGAATTGGCAGATTGGAATATCGA 1640 28 100.0 33 ............................ TGTTTGTCAGCAAACAATAGGTTCATGGCATCT 1579 28 100.0 33 ............................ CAGTATAATCATAACATAGGCACCCCCCACAAA 1518 28 100.0 33 ............................ CTGTATACCGTTTTGACATCGTTTGTTGCGTCT 1457 28 100.0 33 ............................ TTTGTCTGTTTGGCAGCTTCTAACTGTGATGCA 1396 28 100.0 33 ............................ TTACTTGTAGCCACATTTTTTTATAAACTCCGG 1335 28 100.0 33 ............................ ATAATCGTCATGTTGGCTGATTCGCGGCTATTG 1274 28 100.0 33 ............................ TATCTCGGCTTAAAGAGTGGCGCGTTATTCTTT 1213 28 100.0 33 ............................ ATCAATTCGATCAATGGATTTTCCACCTTCATA 1152 28 100.0 33 ............................ TCCAGACTTATAACAGCAGGACAGCTTGAATAC 1091 28 100.0 33 ............................ TGATTCAAAGCTATATTGCTAACACACATAAGG 1030 28 100.0 33 ............................ TCATCATAGGCACGTTATCCTTAGTCCAGTTAA 969 28 100.0 33 ............................ CGAAGGTAACCAATGCAGATTAAAGTACTTAAA 908 28 100.0 33 ............................ CATTGCAATGATTGCCCCACCTGGCGCTGGTAA 847 28 100.0 33 ............................ TATCCAATCAACCATGCGTTGTATGCGCTACTT 786 28 100.0 33 ............................ TAATTTGTGGCTTGCAAACCAATATTGGACTAA 725 28 100.0 33 ............................ GAGACCGTGGTGTGGAAGCTCAAACAACGCAAG 664 28 100.0 33 ............................ TTTGACGTTGGACAGGTTTCGACGGCTCAGCTA 603 28 100.0 33 ............................ TGGCTGTTACAGACTACCGCGAACAAAACTGCG 542 28 100.0 33 ............................ CAAGGCTTAGCCAACGGTGAAAGCTTTGAAAAA 481 28 100.0 33 ............................ CGAAGTAACCGCTAAGGGCTTATCCATGCCACG 420 28 100.0 34 ............................ TGCTTGTTGGGAGTAACATATATAGCGATATTTC 358 28 96.4 0 ............T............... | ========== ====== ====== ====== ============================ =================================== ================== 47 28 99.8 33 GTATTCCCCGCACGAGCGGGGGTGATCC # Left flank : GATCAAGATTCAATTATAGCCATTGGGGCAGTTAAACACGATCAGACAGGTAAAATAGAGCACATACAACAATTTATTAAACTTGGGCATCCGTTGCCCAAAGAAATCACAAAATTAACCGGTATTACAGATAGTAAGTTAGCAACTGAAGGTGTGGAGTTAGATAATGCTATGGAAAATTTTCGAGATTTTGTCGGAACATTGAAAATCGTCGGTTATAATATTAGTTTCGACCTTAATTTTATCAGACAAGCGTTACGTCAACTAGGCGAAAATAATTTGGTCAATCAGAGTGTTGATTTATTATCACTAATTAAGCAAATTCAAAAATTCTTGCCTAATTATCGTTTGGCAACTGTTCTAAAAAAATATAGTATTAATAATGAACAGGCACATGATGCGTTATCTGACGCACAAGCGACTATGTTGTTAGCGGAAAAACTCATTGAAAATGGGCAATTGGAGATTTAGAGATGTTAATTCTATAGGGATCGTTTAGT # Right flank : CCTTCAATTATAAGCTTGACGGGCGTGTTTTGTCGTATTTCTCGTATTTTCGGGAATGACTTTTGCGATTTGTTATGAGGGTCCAGCTAAATGGGATATTTATATATATATAGATACGTGTGGTGCTAGTTTGTAACATTTAGAAATTTAACAAAAAAGTCCAACCCAGTTAGACTCATAAGTGACAAAACTTAAAAGGAGTAATAACTGTGTTGAACCACCTCAAGTTTAAGCAAAATCGTCACGAATTACAAGTTAGTTTCCATTACTTTTACCAGTTATGTTCATTGCTTTATCAGCGTTATTGTCCGCGTAGCGTCATTGAGCGGCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCACGAGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCACGTGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.90,-13.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 6125-178 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHBBS010000043.1 Loigolactobacillus coryniformis subsp. torquens strain 14I Contig_43, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 6124 32 100.0 35 ................................ ATTGTCGTTCAAAATAGATGACACTGAAATGACTT 6057 32 100.0 35 ................................ GCTCCAGAGAGTAAACAACACATCACCATCGAAGT 5990 32 100.0 34 ................................ AACAGAGTGATAGCGCACGGCCATGATTGGCTGT 5924 32 100.0 35 ................................ CGATTTTGCCAGTGCACCAGATGTGACGGCTTATA 5857 32 100.0 34 ................................ GATAGCATCGTTAGCCAAATCCCAATCGCTTACC 5791 32 100.0 35 ................................ GATCACTGTTTTACCAGTATCACGGTAGCTGGATA 5724 32 100.0 33 ................................ TTACATTAGAAATCAATGAGAAGACACTCTACA 5659 32 100.0 33 ................................ TCCCTGTATTGCTGATTATACGAAGCAGTACAA 5594 32 100.0 34 ................................ TGTGCATTATACCCAAAGCGGCCTTTGTTCAATT 5528 32 100.0 34 ................................ TAGTATGGTTTTACTCTTAGCATCGCAGTGATAA 5462 32 100.0 35 ................................ GATCATACCGTCAATCATGACATAAATCTGACCAG 5395 32 100.0 34 ................................ TCTACGGAAGGCATCAAAAGCCTGTCTTGATTGG 5329 32 100.0 34 ................................ TCATAGTCTCTGCCAAACAAATCCTCCTCTCTTT 5263 32 100.0 35 ................................ AACAACAGCAATTAACTTACGCTTTTTTAATTTTT 5196 32 100.0 34 ................................ AAAACCTTGCCAGTTATGACTGCCCAGTTATAAT 5130 32 100.0 34 ................................ TGCTGGTTATGAAGACCTTGTAAAACGTGGTTAT 5064 32 100.0 34 ................................ AACTCGTCCTTATGATGGGGCAAAAGGGGGTCAG 4998 32 100.0 35 ................................ TTCCATTTGTTCAATTGTTCGATCTGCCTTCTTAA 4931 32 100.0 36 ................................ CGGCTAGCTGATGACAGTAAGCAACGCTTGACGGTC 4863 32 100.0 34 ................................ AGCCAATCGATTACCTCCTATTCTCATATTTAAT 4797 32 100.0 33 ................................ TAATAAATAATGCAAAAAATCATTTGTCAAAAC 4732 32 100.0 35 ................................ AGCCCTACTGTCCCAAGGGTTGTAAGAATGTTAGA 4665 32 100.0 34 ................................ TTCCATTTGCTCGATAGTACGGTCCGCTTTTTTG 4599 32 100.0 34 ................................ CGGTACCGCAATTATTTATTGACAACCCGATTAC 4533 32 100.0 36 ................................ AACTCGGTTGCTGGTTATGCCAAGTTAGTTAGTCGC 4465 32 100.0 34 ................................ TCCCCCTGGGTGTCCCGTGTTAGATTCGTCCGAT 4399 32 100.0 35 ................................ ATTTTTTGCTGTTATAACTTCTTTGTGCCACCAAA 4332 32 100.0 34 ................................ TACCGCAGAATCACTGATTACTCCAGCTTCGTAA 4266 32 100.0 34 ................................ CGACATGTGGCACTGACTCAACCTGAAATGTACA 4200 32 100.0 34 ................................ CGACATGTGGCACTGACTCAACCTGAAATGTACA 4134 32 100.0 35 ................................ CAATCAAGGCAAGGATAAAAACATGGCTGAGGAAG 4067 32 100.0 34 ................................ TTTAGTGTTAACTTAAGCCCGTTTAACTCAGCTT 4001 32 100.0 35 ................................ GAATTATTATGTTTGCCAGGCAAGCGAAGTACTGA 3934 32 100.0 33 ................................ CTGAAAATAAGAAAGACAGTAAAAAAAGACACT 3869 32 100.0 36 ................................ ATGCTGGTAATGTTACTAAATCCTATTCGAACGTTA 3801 32 100.0 35 ................................ AAGTTTACGGTGGTTTAGACCCATTAACAGGTAAA 3734 32 100.0 36 ................................ GTTACCAGAACGTCACGTGGAGTACGGACGATCTAG 3666 32 100.0 34 ................................ ATATTCAGATAGATAGTCTTGCATCATAGCTTTG 3600 32 100.0 35 ................................ TGTATAAGACTCAGTCGCTGCCATAAACTCAGAGA 3533 32 100.0 35 ................................ AAAAAATTGAGAACGATTTGAGAACCGCACCCGCT 3466 32 100.0 35 ................................ TAAGTCACCTTGTTTGACCAATCCATCACTCTTGA 3399 32 100.0 34 ................................ CTTCTTGACTACTAATATCATTACCTAAGGTCCG 3333 32 100.0 34 ................................ CGGATATTTAACAATATGATTAAGCCAACCGTTG 3267 32 100.0 36 ................................ TCAACCGATGTTAAGAATGCTTTTAACAAAGTAAAA 3199 32 100.0 35 ................................ TAAAAGAAGCCACCAGTTTGAAGCCGTGTATCCAT 3132 32 100.0 35 ................................ AGCTAACACAGCTTTTTTAACTAATTTTTTGCAAT 3065 32 100.0 33 ................................ TTGCGACTGCCCTGTAAAACAAAGTAATATGGT 3000 32 100.0 34 ................................ TGCCTTTACGCGAAAAGATGGTAGCAGCTTTTAG 2934 32 100.0 34 ................................ CTTATCTGACCAATGGATCAACTGATCTAATTGA 2868 32 100.0 35 ................................ ATTGTTAACGCTATTGGCATAGCGATTTAATTGAT 2801 32 100.0 34 ................................ ATAATCGCCATCATAAGCATTACCCAGTCGAATA 2735 32 100.0 35 ................................ TGCCTTACACTCGGTCAATTGCTTTTTATAATCAT 2668 32 100.0 34 ................................ ACAAACAACTTGATTCTTTTCCTTGGCATTTAGT 2602 32 100.0 33 ................................ CCACTCAATGTGAGACTTAAGTTTCTCCAATAA 2537 32 100.0 33 ................................ ACTTGAAATAACTAAGCGAGCGCCTTTTAAGCG 2472 32 100.0 37 ................................ GCCCTCAGCAAAAGACCAGGATTATTTAACTAGTCAT 2403 32 100.0 34 ................................ ATTTTTATCAGCCTCTTTTCCTAAGTGATAAAGG 2337 32 100.0 33 ................................ TGGGCATCGTTAAATGACTTAGTCGCCTCAGCT 2272 32 100.0 35 ................................ ACTGCCTAAATCATCTAAAACAATAATGTCAGCTG 2205 32 100.0 32 ................................ CATTCCAGCGATAGGATGTTATCCTTGATATC 2141 32 100.0 36 ................................ TGGACGCGGTTGGCATGGTCCCAGTGCTAGTGCCAC 2073 32 100.0 36 ................................ TAAAAAGTGGGCTGTACAGTACGGTGTATCAACAAC 2005 32 100.0 33 ................................ GTTATTTGCAAAAGCCTCATCAACCTTTGACTT 1940 32 100.0 35 ................................ TGGCCATGAATCAAAGCTGGCGGAACACCAATCAA 1873 32 100.0 34 ................................ ATCACATGGCTATTGACCGCAGATCGCAACTGCT 1807 32 100.0 34 ................................ TTGGATGACCGTGGGCGGGCGTGGTCGTTTACGA 1741 32 100.0 35 ................................ ACGTAGTGCCTTAATTTGCGGCTGATAATCGTCAA 1674 32 100.0 35 ................................ TTAATAATCAAACTAGCAAACTTTAAAAAGTCCTT 1607 32 100.0 34 ................................ CTTCTTTCTAAAGTTGTTGTTTCAATTTTTCGTA 1541 32 100.0 34 ................................ TTAATCCGCTGTGATCAAAGCACCGCCATTATTT 1475 32 100.0 34 ................................ TAAAATTGCTAAAGCTGGGCAAGCTAACCACGAC 1409 32 100.0 36 ................................ ACCAGCACAAACGAGCGGACGATTTCCAATGCGGTT 1341 32 100.0 34 ................................ GCCGCTTAAAATCATTAAGCAATTCATGTGGCGT 1275 32 100.0 34 ................................ AATTCATGATACGTATTTGACTGGTTATCAAGAT 1209 32 100.0 34 ................................ AGTTGGGACGCTGGGACTTTGCGTTATTTTTAAT 1143 32 100.0 34 ................................ ACCGCCCTTAATTATTAATTCTTCACTGTTTAGC 1077 32 100.0 35 ................................ TTGTGATGCGGTCACATCTTCTACGCTGATTGCTG 1010 32 100.0 34 ................................ TTATAGCGTGCCCGATGCAAATAAGATTTTGAAG 944 32 100.0 35 ................................ TGGAAATTGCCGTAGCTCTTTATTGCACCAACGGC 877 32 100.0 34 ................................ CCTTATGCTGGCAAGGTGTTCGGGCTTACCTTTA 811 32 100.0 36 ................................ ACTAGCTGGATAGCATCTTCGAGGGTGTCCCTCTCG 743 32 100.0 35 ................................ ATTATCGTTCCCAGGGTTATATGAGTGTACCGCAA 676 32 100.0 36 ................................ GCTAGTCCGATTGCGTCATAAAAAGTTCTTGACAAT 608 32 100.0 34 ................................ ATGCAGTACAAGGACACCGCGGGCACACTAACCA 542 32 100.0 33 ................................ TCAACCAATTCTTTCGATAAATTTGGTGTTTCC 477 32 100.0 36 ................................ ACCAACTAGCGTATCTGGATTAGCGTAATCTGAAAT 409 32 100.0 36 ................................ AGAAATATCCTTAAAGAAATGGCAAGCCTCCGGAAT 341 32 100.0 34 ................................ TGGAACACCAGAATTTTTACCGTCACGTCCCTTT 275 32 100.0 34 ................................ TTTGTTATCAAGAAAATCTCCCCCTTAATTAGCA 209 32 87.5 0 ........................G.CT...C | ========== ====== ====== ====== ================================ ===================================== ================== 90 32 99.9 34 GTCGCACTCTATATGAGTGCGTGAATTGAAAT # Left flank : ATCTGCTTTTGTATGTAATATCTGACCATCAAATGTCAATAAGTTATCCTGCCATGCCTGTTCAATATGGATCAACGCCCACTGCCGCTGACAAAATCGAAAATGCTGAATCCCCGAGATCATCAAAAAGTCGTCCTCCGTGTATTCCAATATAAATCATCCCATTAATTATTTTAAAATAACAAAGTACTTAAGAATATAGTAGCAAGTATACAGCACGATGTAAACGCTTATATCAGCAATACTACCTGATTTCATTATTTATCTAACATAACTAGCATCGATTCAATAATGATGATAAAATTTCAATGATAGTATTAATTGCCTTGGTAAAAGATTTGCAAAGTGCGAGTAGAAAGTGCACATACTTTTTCAGTTGGTTTCGCACCTTAAAACACTGGTTCTTTTTTATTTTATTGCACTTTATTGATTTTTTACTTTCCTAATTAATATTATCCACAAGATATAGAAAACAAATTATGTTAAAACTATATTTTGCG # Right flank : CAGTACAACAACAATTCCCATAAATCTGTTAATACCTCACAACAATAGTTAGTAAGCACCAAATAACTGACCGACTATCAAACTAACTAAATCCAAGTTATGATTACCTCATCAAATAATTGGTGAGGTGATTTTTATTGGCAAAACCCGATATTGTACAAATCAAAATGGATCAATC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.38%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //