Array 1 37123-36847 **** Predicted by CRISPRDetect 2.4 *** >NZ_LEBD01000029.1 Lactiplantibacillus plantarum strain CIF17A2 CIF17A2_contig00004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 37122 28 100.0 33 ............................ TACATGGTATCAACCGTGTCAACAATCGTATTA 37061 28 100.0 34 ............................ CTAGCCACTGACAATCCGCAATTAGGTAATAATG 36999 28 100.0 33 ............................ TCAACAATTGATACACTCAGTCAAAAGGTTACC 36938 28 100.0 33 ............................ TCCACCAGTTACAGAGGAAGACATACCTTTGAT 36877 28 100.0 0 ............................ | ATG [36853] ========== ====== ====== ====== ============================ ================================== ================== 5 28 100.0 34 GTGTTCCCCGTGTATGCGGGGGTGATCC # Left flank : GTGACAATTGAACAACAAAAGCAATGGCTGGCAGACCGAGCAATCGGGGCTGGCTTTGAGCTGGTTGGTCATCGTGAGACGGAATCTGACAAGATTCACGAATTCGCATTTGACGTGGTGAGTCATGATTGGCCTATGCTTCACCGAGCTAAAGGGCACGGCGTTCGTTTAAGTCGTGTGACATTTGAAGGGCTCCTATGTGTCAAGGACCTACCGACCTTCAAGCAAACCTTGACGAGAGGAATCGGCCGTGAAAAGGCATTTGGTATGGGGCTAATGACAGTCATTCCTGAAGTACAGTGATTGACTTTCATCGGTGTTTACTGGATTGGTGGGCCCGGAACCAGTGCTGGCGAACCAGGTATGCGCTAGTTTTTATCGAGCGTATTAGTCAGGGGTTAGTTTTACAGTTCGTCCGTGCTTGTTATCCTCGAAGTCAAGCTAACTTATTTTTAGTGTTTGGTATTTTCAGAAAGGCTTGGGGACGGGATCTGTCAAGT # Right flank : TTGGCTTGAATGCAGCAGTGACCCGTACAACAAAAGAGCGAGCCTTCGATTGAAGGCTCGCTTTGTGTTCTCAATTATTCAGTGTGGTGTTTCCGAACTGGACTGACCCAGGTGCCGCTGCCGTAACCCAGGATGGTTTTAACGGCTGGAACCAACGTTGTGACCAGGGCGAGGGCGTTAACCTGCCAATAGATCAGCATATAGAGTGGCATGAAAATCAGATATTTAAACTTGCGGCCACGGTCGTCAACGATCAATGCGGACAATAGCTGCAAGACGCCGGCGAACATTTCGAAGGTCACGAAGATGAAGGCCATGCAGAACATATGATAGACGCGCTCGTAATTGCCGGTAAAGAAGAAGGTGATGAGCGAGATCAGGAAGATCAGCGTTGAGACAAAGAAGAATAGGGACCAGATGATGCTCAGCGTTTGATCAGTAATAAAAGCCCATTGCTTCAAATACTTGCCGGGATGACTGGCAACTCGTTTAAAGTTGGT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTGTATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-10.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 45441-45713 **** Predicted by CRISPRDetect 2.4 *** >NZ_LEBD01000029.1 Lactiplantibacillus plantarum strain CIF17A2 CIF17A2_contig00004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 45441 29 100.0 32 ............................. GAAACCTCTGTTACTGTGATCAATGGTTATGG 45502 29 96.6 32 ............................C ACTTGCCGCACGGCATTTTCATACTGACGAGC 45563 29 93.1 32 ..............C.............C GGTTTCAAAGCCGCTAAAGACACTAAGTCTGG 45624 29 96.6 32 ..........................T.. AAGCAGATTGCCACGTTACAAGAAACCATCAA 45685 29 86.2 0 ...............A.......A.C..A | ========== ====== ====== ====== ============================= ================================ ================== 5 29 94.5 32 CTATTCCCCGTGTATGCGGGGGTGATCCT # Left flank : CGAAAAATAATAATTGTACCGTCTAATCTCAGTTCACTAAAATTACTTTCATTGGATATTTACTTATCTTAAGTTTCTGCGGCCTGTAAAACAATTCAAAAATTAGCTATATCTTATACTAACATTTAAATTCTAGAGGTTCAGCTTCGGCTTGATAAAACGTCGCTATCTTTGTCTCAATTATTATGTGAGCAAGAATCGTTGAAACAATAAATAATTTGCTTTACAGATGAGATATGCCTGTTGCAAACCTAGTACTTGGTGTTCACCGCATAGTTATTAATCATAAAGTTATCTCCTAGCATTTTGTATCACATAATTTGTGCAACCTAATAATCTCAATCAATACTCACAACAAGTACAAATTCAATACCATGAAGGCCGCCTTGCTATAAGGCCCCCTTGCTTGTTTCGTCATATTAATAGTGTTTATTAAGCAAGTTGACTTAAATCTCTCAAGTACTAATTTGATATTGCTGCTATAATAGGCTTTGTTTAGT # Right flank : AAACAAAGCCATAGATAAAACAACAAATCACTTTCGAACAACTGCGACTTCACAAATATAAAAGTGCATATTTTACACATCAGCACTACAAAGTCTCACTAAACGTTTAAAGAACCGTCGTTAATCAACTTATATGTTAACTCCAGTGTTGCCTTAGCATCTGAAAGCGCATTATGTGGCCTTAAGTTCACAATTTGATAATCTGCTAATACCGTTGACAGGCGATAATTATCCAAGAAGACATTTGTGCGTTTTACAATGGGCATGAGATCTGTTGTGTGATTGGTCAGTCTTTCTATGTCATTTTCTATAAAAGCTTGCTTCAAGAACATTTCGTCAAAATGGAAATTATAGCCTACGATTACACTATTACCAATAAAGACCTTCATTTCACTCAACGCCATAGCTATCGAAACGCCTTGCTCATTAAGCATGTCACGTGTGATTCCAGTAAGCGCAACAATTTTTGGGGACAACGGTCGATCAATTTTTATTAGTCG # Questionable array : NO Score: 3.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATTCCCCGTGTATGCGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCATGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.90,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 47986-48379 **** Predicted by CRISPRDetect 2.4 *** >NZ_LEBD01000029.1 Lactiplantibacillus plantarum strain CIF17A2 CIF17A2_contig00004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 47986 28 100.0 33 ............................ CCAGTCCTCTCGTGTTTGTGGCGCAACATTAGT 48047 28 100.0 33 ............................ CAACTATACCAGATTTTAATTATTTCCCGTCTT 48108 28 100.0 33 ............................ TATCAGTAATCATGTCAGCCGTGGCGTCTAATA 48169 28 100.0 33 ............................ TCTTCTTTTGCCAAAGGTTTATCATCAACAAGT 48230 28 100.0 33 ............................ CATTAATTCCATAAGCCGCCCTGGTGCTTTAAA 48291 28 100.0 33 ............................ TGGCGCAGTTGCCGGTTTGATTGTTAGTGCGGC 48352 27 89.3 0 ...............G.-A......... | T [48377] ========== ====== ====== ====== ============================ ================================= ================== 7 28 98.5 33 CTATTCCCCGTACATACGGGGGTGATCC # Left flank : TAATAATTGCTGCGGGTACAAAAACCACGCCACGAGCATCACTGACTCGAATCGCACTATCTTGGCGATCGAGTTTGGCATGTTCCAAGTATAAAAATGTTAATCGATCATGAATTCGACTCAATTCTGACAATTCTGGCTTTTTTGCTCCAGATTTTTTCATTAGTACTGCACCTCCAAAATATCTGCATCAAGTTCACACAGTTAACTCTCAAAAAACAATTTTTCCATGAGTAAAGAACATAATGCGCTTTTAAATATAGGATAAGTATTGGTCAAACGCGAAAGAATACGCTTGCATCTTGCTGTAACCCAGATGCTCAAAAAAACTCAGAGTATCATATTTCATCAAAATCAAAATTATCGCGCCTTCATAATTATAATATCATAATTCATTTGCCATAAAAAACACATATATGTATACTTATATGAGATACAAAGTTAACTGAAAATTGCTCATCAGCTCTTTCATATTATTGATATATCACCATTTCTTTAGT # Right flank : CGCCTATTTGTTCGACGGGAATTTCTTCCCCGCTACAGGAAACCCATATTTTAATAAAGATTCAAGTCATCCCTAATTATACTGTTGAACATGAATCCAGTTGGATCCGGTTAGCCATTCGCAACATATATAGAAGAAGGTGAAAAAAGTGTTTGAATTACTTGAGGCTATTATTGACATCATCAAACATTTTGGAATGGCACTTGTATTAGGATTTTTAGCATATGCTCTAATTTATATAATTATCGGTGTATTTACGATGAATTAGATACGCTACTTTCCATAACATGAAATGGAATCTTCAGTTACTCTTTGGCGTACTTTCTACTTACTAATGCTTAATTTAATCCTTTATCTTAATCAAAAAGTATTGACGAAATATAGACATATGCAAAATAATTTCAAACCAGTCAAGATCAAACCAACTTGCTGGCTATATTTTCTAGTCGACCCATTTCGTTTCACATTTTAATTCAGCCTGATTATTGCAATATTTTCTT # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATTCCCCGTACATACGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.60,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 4 50790-51245 **** Predicted by CRISPRDetect 2.4 *** >NZ_LEBD01000029.1 Lactiplantibacillus plantarum strain CIF17A2 CIF17A2_contig00004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 50790 28 100.0 33 ............................ CAGTTTTACAAATTTACCAGCCGCCGTCGAAGA 50851 28 100.0 33 ............................ TAATACGGGTAAAGGCGCAACCGTTGATCCGCG 50912 28 100.0 33 ............................ CCTGCCAGGGAGATAATTGCAGTTAGTAGGCTT 50973 28 100.0 33 ............................ TGGTCAATTAACGGGTATCGCTGAACAGGTTAA 51034 28 100.0 33 ............................ TCATTATCAACATCTCCATCTTTCTTCACATAC 51095 28 100.0 33 ............................ TAAAGTGTTGAAAAAATCAAGAACATTCTTGTT 51156 28 100.0 34 ............................ CGACCTTGATAAATGGGTGCGCTATTCCTTGGAG 51218 28 92.9 0 .......................A...T | ========== ====== ====== ====== ============================ ================================== ================== 8 28 99.1 33 CTGTTCCCCGTGTATACGGGGGTGATCC # Left flank : GAAAATCGGCGCCCAATCGACCTTAAAAAACTAATCAAGAAACGTGGGACATTTGCTTGGGAATGGATGTACTCAAAATCCTACTACCACACGGCCGACATGATTAGTCAGCACGATATCTTAGAAACCATTGCGGGTTTGCTTGACCGTGGCTTGCTTCAAAGCACGCTATCACAGACACTACGGCCAATCAACGCGCTTAACTTGCGGCAGGCCCATCAACTTATTGAGCAGCATCATATGATTAGCAAGGTAGTTATTGATGGATGGGAATGAGTTGACGTGTATTACGGCTCACGCGATAATGATCAACTTTAACTCGCCAAATACGCTGTCCTGTTCTGTCTTTTGATGCTTACAACTGATGTTGCACTCCAATGGAGAAATTATTGATATTCTTGGAGCCATACCTTATAGTCAAAGTAGTGGCGATTTTGCAAGTTAACTAAAATTCCTTGTTTTGTTATTTTTGATTGTTGATTTACCGGGATTTATTTAGT # Right flank : TAGGTCATTAAACTTTCCAGTCCGAACCAACGTCAAACCTATGGTATCAGATGGTATCAGACTCGCTTATTTTAGCATCGCCCCCCGCTAAACTACCAAACTTTCTTTTTCAGTTTCCAAAATATTAGTGCTATGATGATAGCATCAATTTGACTAAAACACTTAATCAGAAAGGACTTTAAAATTGGCATTTAAAACACCACTGGCTGATCAGATGCGCCCGCAATCATTGGAACAGATGGTCGGACAACAGGATCTGTTGAAGGCAGGCCAGCCACTACGCCAGATTATTGATCAACATGTTAATATTCCACTCATTCTGTGGGGGCCGCCGGGAACTGGCAAAACTAGTTTGGCGCAGATTATTGCGAGTCAAGACGATTATCCATTCGTGGCTTTTAATGCTTCGACCGAAAATAAGGCACAGCTGACGAAAGCCATCGCACAATACCCAGAGCAATCGTTTGTTCTATTAATTGACGAAATTCACCGAATGACTA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGTGTATACGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.60,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //