Array 1 310-14 **** Predicted by CRISPRDetect 2.4 *** >NC_005877.1 Picrophilus torridus DSM 9790, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 309 31 96.8 36 ..............................C TCAATGGCCAGTCTTAATTCTGTTTTTGCCTGTTGT 242 31 100.0 35 ............................... CATTAAAGGACCACGCACGGAGAAATGCCTCTGGC 176 31 100.0 35 ............................... CTAGTCTATCTATAAGGGTTTGAAATCCGATATAT 110 31 100.0 35 ............................... ATAGTATCTCGGCAAATATGGCCAAGGAAATCCAG 44 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ==================================== ================== 5 31 99.4 36 GTTAAATAATAACCTAAATAGGATTGAAAGT # Left flank : TATATTTCAAAGAGATGATTTAATGGTATGGGTAATATTAATATATGATATAGAAAAATCGAGGGTTAACAAAATAAGGAAAATATGTGAGGGTTATCTTGTAAGAGTTCAGGAGTCGGCTTTTGAGGGTTACATATCTGCGGCTCTTTTGAATATATTAATCAAAAGATTAAAAAAGGAAATAGACGAATCATATGATAAAATCAAGATATATTCATTTAGGGAGGATAGAAAGGGTAAAATAATAGAATTGGGAGATGTATCCCATAAAGATAATATAATATAAAATTTATTGTTTTATTAATATATTTAATTAATAAAAAATAAAATTAAAACTCTTTTTTTTGATTTTCACACCTAGCTATATTTTTTATACCCAAGATTTTAAACATGTAAAAATTAACAATCCTTTAAATATTCAGAGGTAAATGCAAAGTTTGTTGCATTTTAAAAAACAAAAAGATTTAAAAATCATTTATTATATTGTTTATTAGAAACGG # Right flank : TTATCCGAATTCAT # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAATAATAACCTAAATAGGATTGAAAGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.42%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.80,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [15.0-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : NA // Array 2 52338-51347 **** Predicted by CRISPRDetect 2.4 *** >NC_005877.1 Picrophilus torridus DSM 9790, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =============================================== ================== 52337 28 100.0 42 ............................ TGTCTTTCCTCTGTGTACTAACTTCACTATAGCACTGCCCGG 52267 28 100.0 40 ............................ TACATACATATCCTTATCCATTTTTATCACCAATATTATA 52199 28 100.0 38 ............................ TGATGTAGAAATATATAATTCATAAATTTTTTTCCAAG 52133 28 100.0 47 ............................ TTCTACTCGATATATATCGTTGTTAGCCAGCAGATCAATAGCTTTTA 52058 28 100.0 37 ............................ ATTTTAGCTATTTTTTCTATTCCATAATTCATTATTG 51993 28 100.0 39 ............................ CATTTTACCACCTCAATATAATAATAGAATAGATTTATG 51926 28 100.0 44 ............................ GGGAGCGCTAAGCAATCCTTTGTAGTCCTAGAACCAGGCTTTAA 51854 28 100.0 42 ............................ CTTTTCCACATGCACTTCCCGGAGTGGATGACGCAGATCATC 51784 28 100.0 40 ............................ TTAAGATGGAGCTAATCTTTTCGATATTCCAATTTTTAGT 51716 28 100.0 45 ............................ TTCTTTTTGAGGTATTTCTTTGGCTTTTTTGAGGCTGTCTTCTCT 51643 28 100.0 38 ............................ AGGAGGATATCACTCATCATCCCACGCAACAACGTCAA 51577 28 100.0 38 ............................ CTTAAAGAAAGGGTCAGAAACGACGTCTATTTTTAAGA 51511 28 100.0 43 ............................ CTGTTCCTCAAAAATTTATTTTGCCTGCTACTGTAGTTTACTC 51440 28 100.0 38 ............................ GAATATAATTTGTATATCCCGGATATTTTCACTTTTTT 51374 28 92.9 0 ..........................GT | ========== ====== ====== ====== ============================ =============================================== ================== 15 28 99.5 41 GTTTAAGAATTACTAGATAGTATGGAAG # Left flank : AAAAATGAATGAAAAATATATTCCATTTAAAAGTGGTGACTAATGTACATAATACTTGTATATGACGTTGATGAAAAACGTGTTTCCAAGGTTAATAAATTTCTTAAAAGGTACTTATTATGGAGACAGAATTCAGTATTTGAGGGTGAAATAACTGATAAGCTTCTTGAAAATATGATTTCCGGTGTAAATAAAATTTTGAAAGATCAGGACTCATTAATAATTTATAAATTTAAGGTAAAAAGCTACATAGAAAATATAATACTTGGAAATGACAAGGGCAATACCGATAATGTAATTTAAGTTAAAAATTCTTTAACAAAATATTTAAATAACAGTGTACCTTTAAATACTCCAGGCAAAAAAACGGTTGACCGGAAATTTAAAACATATACAGTAATTTATTGAATTTTAATACAATTTTTACAGTTTTTAAATAATTTATAAAAATTGGGAGAAGAACTTTTATATATCCATCTTACATTATTTTTTTAGTAACG # Right flank : GTTTTTCCCTCCCTGATAGCTTTAATTTTCAATTCTGTTTAAGAATTCAAATAAACGTTAGAATTGTTTTTATGCCTTGCCATAAATTGATGGATTGATTTCCTTGGATATAGTTCCATCATCACTGAATTATCAAAGGCAATGTTCTCTAATTTTATCATAAATCTGGATTGCAATGTTTATCATACCATCGAAGTTCAATTTTTGATGCTATGCATTATTTTACTGCAGCAGCCATGGCAATGATAATTAAAGAATGACCAGTATAAAGTATTATATAAAATGCTATGTTTTCTAATTATGCCCAAAAGCGATAATATTGAAAATGAAATAGAGCAATGCAGAAGAACTTCAATGGATAATAAAACTGTTACATATGATCTAAGCAACATAAATTTTTCTGACATAAAGAAAACAACCAAAGCACTTGCCAGGGTTTTATTTGATAATGATATAAATAAATGGATATCAAAAAGTGGCAAAAATTTAACTGTAACACC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAGAATTACTAGATAGTATGGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 3 62558-61415 **** Predicted by CRISPRDetect 2.4 *** >NC_005877.1 Picrophilus torridus DSM 9790, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================ ================== 62557 28 100.0 45 ............................ TTTTAGGCTACCACACACGGGACATGGATATTTATATTTATCTAA 62484 28 100.0 39 ............................ CCATTCATTATACGCTCTGTACAGCTCGCCCCGATCATT 62417 28 100.0 39 ............................ CCATCGTTATTCCCGTTATGTCTATTACGATGTCGCCTA 62350 28 100.0 38 ............................ CTACATAACCGCCATTGCCGTCTTCTTTTGATTCTACG 62284 28 100.0 41 ............................ CGTGGAAGCATTAGGCTTGACCTCAATATTCGAGACTTTAT 62215 28 100.0 39 ............................ TCATACATTATCTTATTTTCGTTTCCAAACTGTTTGATG 62148 28 100.0 41 ............................ TAACTCCGTGTAAAGCGTACCTCTTAATACAACCTCGCCCT 62079 28 100.0 41 ............................ ATGATCTTCTCTGATCTGTCTCAGACATTTTTACATAATGT 62010 28 100.0 48 ............................ TTTTTGCTCTCAATGTAATTTTTGACGGCAACATAGATTTGCATGTGG 61934 28 100.0 42 ............................ GATAATGAAAAAATCATGACCGAATAAAAAATTGCATTGTAT 61864 28 100.0 41 ............................ CAATTTTTATATATCATTTTAATCAACCTCCTTTATTGTCA 61795 28 100.0 38 ............................ AATCACCGGAAATAGGAGAATTGACCAGGCTCTTAAAG 61729 28 96.4 39 ............A............... GTGGACACCGTCCATCAGGTGTTTGTGCCCTGATTTGAT 61662 28 100.0 48 ............................ TTTTTGCTCTCAATGTAATTTTTGACGGCAACATAGATTTGCATGTGG 61586 28 100.0 45 ............................ GATAAAGATAACGGCGGCAACGAGAACTATTATGGCGAATATCAG 61513 28 100.0 43 ............................ AAGAAGCTTTATTCTAAAATCCTTTAGAACCCTATCAAGCTCA 61442 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================================ ================== 17 28 99.8 42 GTTTAAGAATTACTAGATAGTATGGAAG # Left flank : TGATGATAAAAATAAAAATTCAATTATATATGAAAATAATAAAACAGAAATAGAAAAAATTTTTTATCCTGATTTAAACGACGTTTATTTTTTAAAGGTTCCAATAGTCAGAATACCTCCAGATGAAATAAATAAATTAAAAATGGCATTAAACTCAAAATTTATAGAGGATTCAACATTAGAGGATTTTAGATTAAAGGCCTATAGGGATTCAGGATTTTTAACATATGATAAAACCAGAATATATAACACAAGGCTGGGTGATATAATAAAAGAATTTTTGCAGTAAACCTTAAATAATGTAATAATTTTTTTAACAAAATATTTAAATAACGGTGTACCTTTAAATACTCCAGGCAAAAAAAACGGTTGACCGGAAATTTAAAACATATACAGTAATTTATTGAATTTTAATACAATTTTTACAGTTTTTAAATAATTTATAAAAATTGGGAGAAGAACGTTTATATATCCATCTTACATTATTTTTTTAGTAACGG # Right flank : TCTTTTAGTTAACTTCGCTCAACTCCTTACGTAACAAATAAAATATTGCTATAATGGTTAGTAAGATATACAAATTTGATTATATAACAGGAATCATATACATCCAAATGCTTATTACCTGGCAATAAAACAATAGAAGAACATGAAATGTCTAATAGAAAGAGCAATATTTAAATAATTGAATGGTACATTAATTCATATAGATTTGCAGGCTTTATAAGATAATAAAAAAGGTAATCTGAGACATTTGAGGAATAGAAAATATACCCAGGAGGTTTAAAAATAAATGAAATCATGATTTCTAAAGGTGAGTGTTAATATGGTTAACGAGGACAATAATCTAAATGAAGGTGGGGGTATAATTCATAAGATAGTTGCGGGATTATTGATTTTGAGCATGATAGCTTTTATTCCGATTTTTTTATACGGGTTTTTTAGGTTTGCAGCAAGGCATTTGGTTACAGCTTTTCTGGTTATCGGTTTCTTTGCTCTTCTTGCGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAGAATTACTAGATAGTATGGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 4 1545874-1540130 **** Predicted by CRISPRDetect 2.4 *** >NC_005877.1 Picrophilus torridus DSM 9790, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================================================================================================================================== ================== 1545873 30 100.0 37 .............................. AGAGGTTCTGTTAGATATGTAGGGAAGCAGGATTATA 1545806 30 100.0 37 .............................. ACAACGCCGTTTAGGTCATTGGGGGAAAGATCCATCT 1545739 30 100.0 38 .............................. CCATTATCGTTTTTTGTCATTCAATTAGCTTTATTTTA 1545671 30 100.0 39 .............................. CTCAATGAAAATTGAAAATTATCATTTTCAGTCTTTTTA 1545602 30 100.0 37 .............................. CTACAAAAACTGGAATATTGAAAAAATAAAGTCGGCT 1545535 30 100.0 37 .............................. CTAATTCTTGATGACGCTGGTCTAAATCTGTATTCTC 1545468 30 100.0 36 .............................. ATTTGATGGAATTCGCAAATTTGTTTTTCTTTTCAT 1545402 30 100.0 38 .............................. AAATATTGGGAGTAACAATCCCATTTAACAGGGTTGCA 1545334 30 100.0 37 .............................. ATAATCAGGAAATAGAGACAGTCTAACAACGCCGTTT 1545267 30 100.0 40 .............................. ATGTCCCATTCCTTTGGAAATGATTGAACCCAGCCGCCCA 1545197 30 100.0 36 .............................. ACATATGTAAAATTTAATTTTGAATTAAAAAAGTCT 1545131 30 100.0 38 .............................. ATTTTTGATGGTGCTGTGCCGTCTGCCAGTTCATATGA 1545063 30 100.0 37 .............................. TCTTATATTCCTCGCCCTGGCACCTGAAATAGGCCAT 1544996 30 100.0 36 .............................. TTTTCAAATGATAAATTTTCAAATAATTTTTTGATA 1544930 30 100.0 36 .............................. GATTACTGACGAATTTAGATAAAGATAATACGATTG 1544864 30 100.0 36 .............................. TGGAAAACCAGCGATTTTGCAATTCAAAGGAATATG 1544798 30 100.0 36 .............................. AAATTTGTTGGCAGGCAGGATTATAAAATTGGATCA 1544732 30 100.0 36 .............................. TTTTCATAAAAATGATTAGTTGAATTCGATATATAA 1544666 30 100.0 38 .............................. TATCAAAAATTCCAATGCCACACTATATCATCAGATCG 1544598 30 100.0 41 .............................. ATTCAAAATGATCCATTTTCCTACTGTCGGCACGGAATCTG 1544527 30 100.0 38 .............................. AGTTATTTCTTTTTTTTAATATAACCAGCAATTTTTAA 1544459 30 100.0 35 .............................. ATAATGGATATTCATGGTATGCTTTGTTTGGATTT 1544394 30 100.0 38 .............................. TTGATAAGACTGTTTGATTAGAATGATCAAATTCAATA 1544326 30 100.0 39 .............................. TATGCGGCTCCGGAATTTATAAGGATAGTTGGGACAATG 1544257 30 100.0 38 .............................. TTGAGAATAACCATAGGAATGCATTATTCATAAGATTA 1544189 30 100.0 37 .............................. ATTTGATGGAATTCGCAAATTTGTTTTTCTTTTCATG 1544122 30 100.0 36 .............................. TAGAAAATTGAGCATTGGATCATCGATAGCAATTTT 1544056 30 100.0 36 .............................. CAAAAAACAAAATCAGGCTCAAAAATTCAGAATTCA 1543990 30 100.0 37 .............................. TAAGTGATTGCCGATTTTAATCAAAAAACTATCGATA 1543923 30 100.0 36 .............................. TCGATTGCCAACGAGGTGATATAAATGCAGGAAGAG 1543857 30 100.0 38 .............................. TTCGATACAACTGGTGTTAACGATGAAAACAAAGGCGG 1543789 30 100.0 39 .............................. TGAATGAGTTATATGAACTCATAGAGATGTATTCTATCA 1543720 30 100.0 38 .............................. TTCGATACAACTGGTGTTAACGATGAAAACAAAGGCGG 1543652 30 100.0 39 .............................. TGAATGAGTTATATGAACTCATAGAGATGTATTCTATCA 1543583 30 100.0 37 .............................. AATGTCCTGCATAATTCTCAAAGAGGCATAGGATTTT 1543516 30 100.0 36 .............................. TTTACTTGCATACAGTTTTTTTTCATTTCTATATTC 1543450 30 100.0 39 .............................. AATTTTTAATATTTTATCGCCGTTATCCGTTATTTCCTT 1543381 30 100.0 36 .............................. TCAGGCGGAGAGATGATGTACGAGGTCAATAGCTTT 1543315 30 100.0 36 .............................. TTAAATTTTCCGAATACAATCATATTGATCATATAT 1543249 30 100.0 38 .............................. ATCGAATAATATCTGTTTTGAGAGAAATTCAGGATCGG 1543181 30 100.0 36 .............................. AACAAAGATATTACGTTGAAGGCAAGCTTTGATCCA 1543115 30 100.0 39 .............................. AATTGAGCCGAATTTTCCAAAGCGTCATGCAAAGATGAA 1543046 30 100.0 37 .............................. ATAACGATAAGCCTAACTCCATATCCTTTGATTTCAA 1542979 30 100.0 38 .............................. TCGACTATGACTTTGAGATTTTGAGAATGAGAGAATGA 1542911 30 100.0 35 .............................. CTAATTCTTGATGACGCTGGTCTAAATCTGTATTC 1542846 30 100.0 38 .............................. ATCGATACTCTGGAATTTCAAAAAAATGGATTTCCGCA 1542778 30 100.0 38 .............................. AGCTATTAGAAAACAGATACAATGCGTCAGACATTGAA 1542710 30 100.0 36 .............................. AAGTTCATAGGAACAGTATGGCAGGCAGGAGACAGG 1542644 30 100.0 38 .............................. GAGAATACAGTTATGGCTATTTCAGTTATTAAATTCAT 1542576 30 100.0 37 .............................. TTAATGCAATCCAGTTTTAAAAATTTCAATACCTATA 1542509 30 100.0 37 .............................. TATTCAGCTTCATGGAGGTAGCTATCAAATAAATTTT 1542442 30 100.0 38 .............................. CAGTCCTCTCGCCTTTGTTTACCTCCGTGAAAAACCTG 1542374 30 100.0 37 .............................. ATCCTCAATCTCCCTTGCCTTTTTTAGTATTTTTCGA 1542307 30 100.0 39 .............................. AACTCAGGGCCATAACAGGCTGGATTGCATACTTTTCAA 1542238 30 100.0 37 .............................. GCCATATTGCAATAGAACCTTTGAATTTGATGTATTA 1542171 30 100.0 39 .............................. AAAGAGCCTTTGAGATTTTGATAATCGGCTAATTTCATG 1542102 30 100.0 38 .............................. GTGAATGTAATTAGAATAATAGGTTTTGAGGATATAGA 1542034 30 100.0 38 .............................. ATTTGATAGATATGAGAGATCGAGTTTGAGAGGTGGCC 1541966 30 100.0 38 .............................. TGATAATAATCGTTGTCAAAGATAAAGCCATGCCTATA 1541898 30 100.0 44 .............................. CTTTTATTAAAGATTTTATTCATAGCAACCCCTCTATACTCCTG 1541824 30 100.0 37 .............................. GACGCCTATTCATGCGATGCATCTAACGGGGTTTTCA 1541757 30 100.0 38 .............................. TTCGAACCAGGTGTACGACGCATTCCCGATGAGGTATT 1541689 30 100.0 35 .............................. TTTAGAGAATTGAAGCGTCTTTGAAGGTCTTTATA 1541624 30 100.0 39 .............................. TAAAGATATAGAATAAGGACATGAATTATACGGATAGGT 1541555 30 100.0 40 .............................. TAGCAATGCTTTTGTTATTAAGTCCCGATTATACCTTTGA 1541485 30 100.0 36 .............................. AGTTGAGCAGAATGTTCCAGAGCGTCGGAAAGAGAA 1541419 30 100.0 38 .............................. TTTTGATTAAAATTCGTAATCACTTATAGTATTTAATA 1541351 30 100.0 38 .............................. GTAGTCCCTTTATCAAACCTTGCCAGCTCTATCCCTTT 1541283 30 100.0 39 .............................. TCTAAATGACTGTGCCACAGTAGACATGGCCTTGTTCTG 1541214 30 100.0 37 .............................. ATGTATCCTGGTACATTATCAATGTGCAAAGAATAGG 1541147 30 100.0 37 .............................. TTCAGTCAGGAAAAGGTCAGTCATTTTTATTTTTTTC 1541080 30 100.0 35 .............................. AATACCCATTTGCAGAGAGCTCGTTATCTGAACTT 1541015 30 100.0 37 .............................. ATTTTTTGGCTTTTTCTTTAATATGGTAATAGTCTTA 1540948 30 100.0 36 .............................. AAATCAAAGCCTTCTTTATAGCTTACTTGAAAATAA 1540882 30 100.0 39 .............................. ATTGGAAATAACTTTATAAACACAAATATAACAAATTCA 1540813 30 100.0 38 .............................. TATTTTACAAAAACATGTGTATCAAAAAGTTTAAAATT 1540745 30 100.0 39 .............................. AGATAAAGCACGAGTGATGTTAAATTTTTGTCGCATCTG 1540676 30 100.0 35 .............................. TACAGAGAAAAGAATGGCTTTTCTATGCGGAAAAA 1540611 30 100.0 37 .............................. GGCTTTGATATATTTAGAGAGAATGTCTTTAGATGGA 1540544 30 100.0 36 .............................. TGATAATGTTGATCTTATCGTTGCATCACCACCGTG 1540478 30 100.0 36 .............................. GGATCGATAAATCGATAAGGAATGAAAAGAGAGATA 1540412 30 96.7 35 .............................A TCTAGTCCATCTATAAGTGTTTGAAATTCGGCGGA 1540347 30 96.7 158 .........C.................... ATCTTTGTATTTGAAATTTCTATATTTTTATATAAAATTTAAACCTATTAGATTTTATTAACTGTTTTTTAAATATGACTTTAACTATTTTTGATAATTTAAAATTAAATTTTTTTTATAAATACAAATTAGTATGGCAAGATATAGTATTGAAAAAT 1540159 29 76.7 0 T....T......T........T...-.T.C | A [1540145] ========== ====== ====== ====== ============================== ============================================================================================================================================================== ================== 84 30 99.6 39 GTTAAATAATAACCTAAATAGGATTGAAAG # Left flank : GAATTTCAATGAAAAATCAAT # Right flank : AATGTAAAAAATAAAAAATTTTTTTATACAGTATTATATAAACTTTTTTAATTTTATAATAATGTTCACATCAATAGATCATAATAATAGCGATTTAATCGTTTCCGAAGTATTCCAAAAAGGAAGTACAACATACTTTTATAGCAGCAGATTTTTCCCTTTGCATATAAGATTAAAGGTTTCAAGACTCTACGCATTTGTGAGAGTTGCAGATAACTTTGTGGATTCAGTACCACAACAGGTGGATAAATTCTATAATTTTAAAAACGAATATGAACGTGCCTTGAAAAGAGGCTTTTCAGATGATATAATTATAAATAAATTTATAGATCTAAAGAATGATGTGGGCATTGATGACTCCTGGGTTGATGCATTTTTAAATGCCATGGAATCTGATATAAATAAAAAGATCTATTATACAGTACCAGAGCTGCTGTCTTACATATATGGCTCTGCAGAGGTCATAGGGCTGATGATGGCAAGGATACTTGATCTTGATA # Questionable array : NO Score: 9.11 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:-0.12, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAATAATAACCTAAATAGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.80,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [93.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA //