Array 1 1038830-1038147 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARUV010000001.1 Listeria booriae strain FSL L7-1017 NODE_1_length_1430730_cov_34.891979, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1038829 30 100.0 36 .............................. ACTTTAACTGCTTTGGGTATTTCAAATTCCATCGGT 1038763 30 100.0 34 .............................. CGTTGACGGAAAACTGGTTGACGCAGTTCTTAAC 1038699 30 100.0 35 .............................. GTTATAATCTTTCTTCTTCTGGCCTTGCTGCATCT 1038634 30 100.0 37 .............................. AATGGATTATTTTTAGTAATCAAAGCTTTTGCCTTAC 1038567 30 100.0 34 .............................. TCATCATTGAAGATGGCTATGTACAAGGCGCACA 1038503 30 100.0 36 .............................. TAAGGAGCGGACTGTATTCCTCCCAGAATTTCCGTA 1038437 30 100.0 33 .............................. ACCTTCTGCACATTCTCCCCAGCTTTTTCGATT 1038374 30 96.7 36 T............................. TTTTTATATTTATCCGTTAATGACTTCTCGGCAGAT 1038308 30 100.0 36 .............................. ACGGATAGCAGCAAGAAGATTGTAGGCTACTTGCTT 1038242 30 96.7 37 .................G............ ATCCATTTCATGTAATCCTTTGCTTTATCTGCCGATT 1038175 29 86.7 0 ..C...................-.C..G.. | ========== ====== ====== ====== ============================== ===================================== ================== 11 30 98.2 36 GTTTTTATCTAAGTAATATGAAATGTAAAT # Left flank : TGTGTGGCGAAATGGCCGGCGATCAAACGGCTGTACCATTGTTGTTAGGAATGGGTCTAGATGAGTTCTCTATGAGCGCATCAAGCATTCTAAAATCACGTTCGTTAATCAAACGCCTAGATCGCACAGAAATGGCGAAACTAGCGGACGAAGCACTACAACAAGCTACAGAAGAAGAAGTTGTAGCGTTAGTTAATAAATATACAGCGGAGTAATTTCGTTGTTTGGAAGGCCCGAGGATTTTCCTCGGGTTTTTCTTTGTGGGGAAAGAGGGGATGGTAAGTGGTGTTTGGAAAGCGGGGATAAAAATCTGTCGACCGTCGGTAGTGTGGAATTTAGGGGACATCGACAGATTTTTGTTAAGCGTTGGTGTACAAGGGATTGAGCCTTTTTTCGAAGTTCAGGTTGTAAGGTTTGGGAATGGAAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGAGAGTAGGCGTTAATCGGGTACCT # Right flank : TAGATTGCTCACAGATGCAGTGTTTTTATCCATTTTTTACAGAATCAATTATCATTCAACAATCCCAACCAACTCCATTTGCATTTTTACTCCCCCAGATGTACACTTTGTTTAGAAGCGAACTGTATAGAAGGAGGAGTTTTTGCGATGACGAAAATTGGATTTATTGGTGTTGGGGTTATGGGTGCTAGTATGGTACGGAATTTGATGGCGGCGGGGTTTGAGGTACATATTTATACGCGGACGAAAAGTAAGGCGGAAAGCGTGATTCAAGAGGGGGCGGTCTGGCATGAGACACCGCAGGATTTGGCGCCTAAGGTCGATGTGCTTATCACGATGGTTGGATATCCGACTGATGTGGAGGAGCTTTACTTGGCGGAGGACGGGCTGTTGACTACGCTTCGTTCGGGAGCTGTTGCTATTGATATGACGACTTCTTCTCCGAATCTTGCGAAACAAATCGCCGAAGAGGGCAAGGCGCTGAACATTGCGGTGCTGGA # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:83.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 272700-271217 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARUV010000004.1 Listeria booriae strain FSL L7-1017 NODE_4_length_328904_cov_38.942450, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 272699 30 100.0 36 .............................. ACGAATAAAGACCTTGCTAAGGCCGCTAACTGGAAA 272633 30 100.0 36 .............................. ATGATTTTGAGCGCTGGTATACAAATAATTATGGCA 272567 30 100.0 36 .............................. TAGGAACATTCACTGGTGATATTCTAACGTTACAAC 272501 30 100.0 37 .............................. TTGCATATCCTAAAGCAACTATCAAATCCCCTTCGCA 272434 30 100.0 35 .............................. TGGTGCTATTTCGAAATTTAAAGAGAAGTTCAATC 272369 30 100.0 36 .............................. AGCGTTATCCTGGGATGTACCGATAGTCGCGCTTTA 272303 30 100.0 35 .............................. GAAGCCAAAAAGCCAAGTTTAAATGCTTGGGCAAA 272238 30 100.0 36 .............................. TTATACACCAATTGTTTAGAGAAGCCAATCAGGATT 272172 30 100.0 36 .............................. GTTGGTGGCATCAATTGCATTCATTGCCATATTGGC 272106 30 100.0 34 .............................. ACACTCGATATTGTGCATTTACATCTTTCATTCC 272042 30 100.0 36 .............................. AGTCTATACTAGATACCCCTTTCATAGAGCTAATTC 271976 30 100.0 37 .............................. GTTTTTTGGGGAGGGTGATGGCGCATTTAGCGCTTTT 271909 30 100.0 38 .............................. CTATCTAATTTCGTATGTCTGAGAAAAGTCGCTAATAC 271841 30 100.0 36 .............................. AGAATCCCCTTTTTCAAAAGACTTAAGTAAATGGTT 271775 30 100.0 38 .............................. CTTGGAATTTGAGACAAAAGGTCGTCGGTTGCTTCTCG 271707 30 100.0 37 .............................. TTTAGCGATGGACAGACGGAACAAGCAGTAACATTTA 271640 30 100.0 35 .............................. TCATAAGCTTCTAGATCAGCTCCAACTGCAACATC 271575 30 100.0 34 .............................. CAATTCGAATAAAGATTCCTGGAATGTTCGCCCA 271511 30 100.0 39 .............................. ACCGTCACTAAAAAGATTAGCGGTGTGACCTATATCAAA 271442 30 100.0 35 .............................. TCAATCACGTCATCGTATAATCCAGTTCGCTTTGA 271377 30 100.0 36 .............................. TTAGACTATGATAAGGATTTTGCATCCGGCGCTCTA 271311 30 100.0 35 .............................. ACTGCAGATATCTTAGTGCAAATTGGCTGTTTCTT 271246 30 93.3 0 ...............G.A............ | ========== ====== ====== ====== ============================== ======================================= ================== 23 30 99.7 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AAGATTTGGTGGTGAGATATGTATATTATCCTGATTTACGACATAGCAATGGATAACGGCGGCCCGAAAGTATCGAGAAACATTTTCAAAATCTGCAAAAAATATCTAACCCACGTGCAAAAATCGGTATTCGAAGGCGAAATAACCCCAGCACTACTTGCCAAATTGCGAATGGAATTAGACCAGTATATTCGTGACGAAGAAGATTCCGTCATTGTGTTTTCTAGTAGAAATGAAAGGTGGCTGGAAAAGGAGTTTTGGGGCGTTGCGGATGAGAAAACATCGAATTTCTTTTAGTAGATAGAAAAATCTGTCGACCTCCAGTAGTGCAAAATAATGGGGACATCGACAGATTTTTGTTATGCATTGGTACTAATGAGATTAAGCCTATTTTCGGAGTTTGGGTTGTAAGGTTTGAGAGCGGAAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAAGTGTTGATGGGGTACCT # Right flank : TCGCCTTTCTCCCTCATTTTTTACAAATCTTAATCAACTGTTTTTATCTAAAAATAAAAGATACTAATATAGTTCATATCGTGGTATACTAACCGCGAAGGGAATAAGGAGGCATTTTGTATTCTCCCTGACTATACTAAGGAAGCGGAAGGAGATAATTACTTTGAATCACAAAACAGTAAAACTTATCACTCCTGTCATGGGACTCTCCCTGCTACTCTCAACTCTAGCTCCTGTTATTCCAGTGTCTGCGAACGAAACAAATGAAAGCGCTGTAGAAGAAGCCGCAAGCCAATATGCGTTAACAGATGTAGATATAGGTATAGCCAATCAGTATATTACGCTCAATGCAACAAGTAATAATTTTAGCGTCTCCGCCTCTATTTCAAATGTCCTTTCTAGTGAAAAAGTGAACATTATTAATGCATTCGTTGCTACTGCTAATACTTTTATAAAAACTGCCAAAATGGATACATCGATGCCCGTTTACGCTATCGATC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 72557-73310 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARUV010000007.1 Listeria booriae strain FSL L7-1017 NODE_7_length_119523_cov_31.671835, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 72557 30 100.0 36 .............................. GTTTCACAAATTAAAAGAGAGTTGCATGTGGGAGAA 72623 30 100.0 36 .............................. AGTGAAGGGAAGGTTTGTTCTTTCAGTTTTAACTTC 72689 30 100.0 36 .............................. AACAATCTAGCCTCCTTAATCGTTACAAAATACATC 72755 30 100.0 36 .............................. CAGATAATGTTCACTTCTTTTTTATACGATCGCACC 72821 30 100.0 37 .............................. GCGTTTGGGCATCTATCTTGCCGTGTTGAAATCGTCC 72888 30 100.0 38 .............................. AAAAGATTGTTCTTTGTATTGGGCGTTTCAAATTCTGC 72956 30 100.0 36 .............................. AAACTTAAAATAACAAATCGCTAATGGCTTATTTAC 73022 30 100.0 34 .............................. GCATCAAAAACGATGTATTTATTTTCTGCCTCTG 73086 30 100.0 34 .............................. TCTACGGAAAACCTGCGCACTGGAAGTTATCTCA 73150 30 100.0 35 .............................. CCGAACAAAGTAGCGGGGTCAACATTAGTCAGAAA 73215 30 96.7 36 ....................A......... AAAGACAAGGACCAAACGGTTCGATTCACTAAACCA 73281 30 76.7 0 A................C.A...CA...TC | ========== ====== ====== ====== ============================== ====================================== ================== 12 30 97.8 36 GTTTTTATCTAAGTAATGTGTAATGTAAAT # Left flank : GACGCTGAGCGCAACATCAGACCAGTACCGAATTCCGAGAAAATTTGGGATGCGGATATCGTATTAATTGCTGTCGGATTCGCAGGCACAACCAAATCAGTATTCGAAGACTTCCAAGTAGCAAAAACAAACCGTCACACAATCGATGCTAGAAAAGGTTTTTACCGTACCAACGTAGAAGGCGTCTTCGCATGTGGCGACGCAAGATACGGCCAAAGCCTTGTTGTAACAGCGATTAACGAAGGAAGAGAAGCCGCCCGCGAAGTAGATTTCTATTTAATGGGCGAAACATTCTTACCATGATAAAAAATCTGTCGACCTCCAGTAGCGTAAAAACTAGGGGACATCGACAGATTTTGTTTTTGCACAGGGGGAGAATGGATTAGGATGGTTTTCGAGAAGTAGAAAAAAATAAACAGGTGCAAAAAAGACAAATTTCTTGGAGGTCGACAGATTTGGGGTGTTGAGGTATGATGGGAGTAAGAGTTGAGAGGGTACCT # Right flank : CCCCAAAGAAGGAGAGACACCAAATGACTATGGAAAAATTAAAACTGCGAGTCACCATAGACAGAACTATCGGATTTAAAGACGACTACGGAAATACCTACCCAATAAACTACGGATTCGTTCCCGGTGTCATAGCCGGAGATGGCGAAGAACAAGATGTTTACATAATTTCTAAAAATGCAACAACTCCACTCGACACATTTGAAGGAATACTCGTCGCGGTCATACACCGGAAAAATGATACCGAAGACAAGTGGGTAGTTACCTCAAAAAATGAATTATTATCCAAACAAGAGATATCCGAAAAAACGCATTTTCTAGAGCAATACTTTGATTCCGTTATCGAACTCCTTTAACAAATACAACGGTATAAACGCTCACCTTCTCGTAAAATACCTAAATAAAAGATGAATCACTATTAAAAACAGTACACTAACCATGAAAAAACCACTCGATACCCAGTCCATAAAAAAGGATACAAATACTAAAACTACGAGAAC # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGTAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 2 76556-77510 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARUV010000007.1 Listeria booriae strain FSL L7-1017 NODE_7_length_119523_cov_31.671835, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 76556 30 100.0 40 .............................. CCCACCGCGTGTAATGCGTTCTCCTAGCTCTTCTGCTGAA 76626 30 100.0 35 .............................. TACCCTTTTATATATGTGTTAGCAATTTTTAGTAA 76691 30 100.0 36 .............................. GCGCGAATTTAATGTGCCAATATTCGGACAAAGGAG 76757 30 100.0 35 .............................. CCCTAACTCTATTCTTCTAATGATAATTAAGTTGT 76822 30 100.0 36 .............................. AAGGCAACACAATAAGAGATATCAACCGCCCTTTTA 76888 30 100.0 36 .............................. CTGTTCATTATTATCATACTCCCATTTATGTCTAGC 76954 30 100.0 36 .............................. ATTAGCGAATGTCCACATTGCGAATCGGAGGCTGGC 77020 30 100.0 36 .............................. TATATATCGGATTCATTGCCGCAGTGTTGGGAAGTG 77086 30 100.0 35 .............................. CCCGATGCCAGTGTCTTTGATTATACGTGGGAAAG 77151 30 100.0 36 .............................. ATGGGATTTTAATGCACATAATATTTTCACGAATAT 77217 30 100.0 36 .............................. AAGGATAAGGATGCGCTTAACTACGATAAGATAGCA 77283 30 100.0 36 .............................. AGAATATCGTTTCTCCGTTTTCCCAAAGGTCCTTTG 77349 30 100.0 36 .............................. GAAAAAGATAAATACATGTTCTCCAATTTGTTTAAT 77415 30 100.0 36 .............................. GATTACGATGCATCAAATCATGTTATTGCCAGTATT 77481 30 90.0 0 A....................G..A..... | ========== ====== ====== ====== ============================== ======================================== ================== 15 30 99.3 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AATGTTCCATCTTGACGAAGCCAACTGGAAACTGCATAAAAAAGACATCATCAGCAATACGAAAAACTGGGAACCATTCCAAAAAGAAGCATTACAACATGAAATGAGCAGTTTTGAAGTGCTGGATAAAGAACGCCTCGTTCAGAAAACAACATTCGGCGCAAATCTACAAGTCATAGCGAATTTCTCGAAGAAGAATTTCGAGTACGAGAAGAAAACCATTCCTGCTAATAGCGCATTGATTGTGCAAGACGGGAAACAAAAGATAATTTTTACAGATAATCTTGATTCGTAATAACAGGAAGAAAATCTGTCGACCTCCAGTAGTGCAAAATAATGGGGACATCGACAGATTTTTGTTATGTATTGGTACTAAAGAGGTTAGGCCTATTTTCGGAGTTTGGGTTGTAAGATTTGAGGGCAATAATTTAGCATTTTGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAAGCGTTGATGGGGGACCT # Right flank : TGTCAGCGAGGCATATTTTTCAAAGTTGCAAAACAGGTTTTATCTAAAGTAGGAGTTAAAACATAATAAAACGGATTGAATAACAAGAGGGTTAATATCCATTAATACTGAAAAATGGATATTAACCCTCTTAATCTATTGGCCTCTCTGATGAAAATTTTTAGTATGCAATTACCTACTCAAACTAACTACTTTGGTATCAAGCACGTTACCATTGATATCGTAAGCAGTGATGTGCGCGCTATCTGTCGTGTTAAGGATGACCGTTTTTGCATAATATTTAATAGCTGGTGCAGTAACAGGGATTTTAACGCCCTCTACACCATTCACAGTAAGGCTAATTTTCGCTACGTCTCCAGAGAATTGACCAGTAACATAGCCTTCTTTACCAATTACAAATGGAGCAAGTGTGGTGATAGAACCGGTTGCTACTATTTGATTTGCAAGAGTGACAGTTTTTGTGTCCAGTACTCTACCATTGGCATCATATGCAGTTAATG # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //