Array 1 305221-307911 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXNA010000004.1 Listeria monocytogenes strain 2014L-6448 NODE_2_length_622696_cov_27.572_ID_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 305221 29 100.0 36 ............................. TACTCCCAGTAACTGACCATCTTAATTTTTGGATAA 305286 29 100.0 35 ............................. ACTGGAAAAGGTTCCGAAAAAGAACGAGAAGCACT 305350 29 100.0 37 ............................. CATTGATAACGAAAAACACATTGTGCAGCTTGAAAGC 305416 29 100.0 38 ............................. AGGCCTGAAATTTTAGCATTGATATCTTTAGCGATTTC 305483 29 100.0 35 ............................. AAAAGAGTTTAAAGATAACCTTGTTAAGTTCTATA 305547 29 100.0 36 ............................. ATTCGACTTCCCTAACATCCTGCCAGGCGTGTTGGT 305612 29 100.0 34 ............................. GTCGAAGGCGGCAATGAGTTGCTTGCCAGTTTAA 305675 29 100.0 34 ............................. AGTAAGCAAAGCGGTAGATAAAGCGCTTTGCAAG 305738 29 100.0 37 ............................. CGATTAATAAGTGAAGCAATTGAATATGACGATAGAA 305804 29 100.0 34 ............................. AATTAACAGAAGCGGAAATTAAAGGTATGCCCGG 305867 29 100.0 36 ............................. GAAGATTTCGATACAAGATTCTACTTTGATGCTAGC 305932 29 100.0 35 ............................. TTTCTAAAGTACTATCTATTCCGAAGTACACTGCG 305996 29 100.0 37 ............................. TGTTGTTTGCGATTTATGGTTATCTTGTAGACCCGAC 306062 29 100.0 35 ............................. ACAATTATCCCAATTACAGGTAACATTGCAGTGAC 306126 29 100.0 35 ............................. AAAATAGAAAATGAATCAACTGCCGATATTTTCGC 306190 29 100.0 38 ............................. CAAACTATGAAATACGCGGTTGATTTTGGCTTTAATGA 306257 29 100.0 37 ............................. ATTATTACACCATTGATTATAAAGGCTAGTGATTTCA 306323 29 100.0 37 ............................. GATATGTGAAATTTTCAAATCGATTTCTCGTTTTAAT 306389 29 100.0 34 ............................. ATTTTCACTACTAGGATAGACGTTGATTCAATTG 306452 29 100.0 36 ............................. TGACTTCCAAAAATAGCAGAGATTGCCGCCGCTTTT 306517 29 100.0 36 ............................. AACCTTCGATTTCATTCACGATTATTACGAAAAAGA 306582 29 100.0 34 ............................. GAAACTGAATTCACAACATTAAACGATAGAATAA 306645 29 100.0 35 ............................. ATTATTTCTAGAGAGCGCTGGGAACAATACTTAAC 306709 29 100.0 37 ............................. TTTTTCGTTCATAGTCTAATTGATAGGAAATAACATC 306775 29 100.0 36 ............................. TTATTCTCCTTCCTTTGCCCCTCGAATTTTATAGTC 306840 29 100.0 37 ............................. ATGGCTTAGAAACGTTCGGTTTCAATTTAGAAGATTT 306906 29 100.0 36 ............................. CGCATAGTCGGAATAGTCCAGTTGTTGCTCAATAGA 306971 29 100.0 34 ............................. GTTACTTATAAAGCGTCTTTCGTTGCTTTAAAGG 307034 29 100.0 36 ............................. CCTTCTCCCTCTCGCCACGTATGCAAACTGCTTTCG 307099 29 100.0 37 ............................. AGTTATTCCTTTTAACAGAAATGCGTGGCACTGTGGT 307165 29 100.0 35 ............................. AAAAGACTGATGAAAGAATTTTCTTTCGTTCCTGA 307229 29 100.0 36 ............................. GTCTTCGGGTCCGGAAGCACTTCCATGAATCTGATT 307294 29 100.0 36 ............................. CTAACATATTGGTCCAAATTCTTCGGAGCGATTACG 307359 29 100.0 36 ............................. ACAAGATACTTTTCGAGCAGACAATAATAGACGTCG 307424 29 100.0 36 ............................. AGCGTTTTGATAAGCTTTTCTTTGATGGTGTTAAAC 307489 29 100.0 37 ............................. GAATGCCTCGTTTTACGTACTATGTAGAAAAAGACCC 307555 29 100.0 37 ............................. TTTAATGCGTCAGGTAAACGCTTTTTTCGACACTCTT 307621 29 100.0 34 ............................. AATTTCTAATCCTAAATTATCCTTATTTTCCTCA 307684 29 100.0 37 ............................. CTCGCTCTAGCAATTGCTCATCAAAAATATAACTCCA 307750 29 100.0 36 ............................. TTCAGTAACATGTTCGCTGTAATCACGAATCTGAAA 307815 29 100.0 38 ............................. AAGTCCGAGCGTTTTCGCTAACGCAGCTGATACATCCG 307882 29 93.1 0 .......................A....C | C [307905] ========== ====== ====== ====== ============================= ====================================== ================== 42 29 99.8 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTTGGGAAATCATTGGGGGAGAAAGAGTTTAAAGTTTTTAAGCGAAAATCTAAAGGGATAAGTTATGATTTTTACGCAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCATAAAATAGAGCGG # Right flank : CTTCCTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACCTAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCGCAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATTCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTTTCAGCAAATCCTGCTCCCGCGAAAAACAATCCCCACACAAGCCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGTGTCTGTACTTTCTTATTCGCAAGTAGTTCCTTCTCCACACCAAATGTCTTGGCTGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //