Array 1 121760-123060 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLQJ010000013.1 Paenibacillus sp. MSJ-6 Scaffold13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 121760 32 100.0 35 ................................ CTCCAGAGGATCCATTTGCAAACTGCGCCCGAACG 121827 32 100.0 35 ................................ GCGACATAAAGAGAATGGTTCAGCATGTCCAACTG 121894 32 100.0 35 ................................ CTGTATTTTTGACAGATTTTAAATACATGATTATT 121961 32 100.0 36 ................................ ATATTCTTCCTCCGTATACATGTTCTCCGGATCTCG 122029 32 100.0 36 ................................ TCATAGGGTGAAGCGGCTTGGACGAAGGTAGGTATC 122097 32 100.0 34 ................................ CGCAGCAGATTCAACAGTCATACCGCTACGCTCG 122163 32 100.0 35 ................................ TATCTTGAGGCTTACAATATTGAAGGCGTAGACCG 122230 32 100.0 34 ................................ CGCTCAAAGCGTCGAGTATGAAATCCATATTTTC 122296 32 100.0 35 ................................ ATGATGTACGCCCATAACCTGAAGATCTGGCCGGA 122363 32 100.0 33 ................................ AACACCGATCGGGGGTATCTCCTGATTGTCGAT 122428 32 100.0 34 ................................ GTGTAGTAAGCTGCTGATGTACCAGCAGTTACAA 122494 32 100.0 36 ................................ GAACGTAGCACTGGAAAGCCTTCCTTCCATCTTGGG 122562 32 100.0 34 ................................ CCGGCGAGCATCGCCTTATTCGGTAGGCCGACGT 122628 32 100.0 36 ................................ ATCATTGAGGCTAATCACGACTCAGACATGCTGCGG 122696 32 100.0 35 ................................ CGCAGCATCATGCATCTTAAGTCCGTGCGCTCTAC 122763 32 100.0 34 ................................ AAACTCGATGTTCCATACATTTTCCGGGTCCATG 122829 32 100.0 35 ................................ ATGTACCACCCGGACTTATTAATGTCCTTATAGGT 122896 32 100.0 34 ................................ TACTCGGCCATCCCCAAAGTAAATCTCAACAATT 122962 32 100.0 35 ................................ AATTAACCGATGAATTTGGAATGAAGTGTAGCCTT 123029 32 96.9 0 .................G.............. | ========== ====== ====== ====== ================================ ==================================== ================== 20 32 99.8 35 GTCACTCCCCGTACGGGAGTGTGGATTGAAAT # Left flank : TGAGCGATGTAGGAGGAGAAGCAAATGATGGTGTTAATTACGTATGATGTTGAAACAGCTACACCGGAGGGCAGAAGACGATTGCGCCGAATAGCTAAACACTGCCTAAATTACGGCCAACGAGTCCAAAACTCCGTATTTGAATGTTTAGTTGATCCTACGCAATTTAAGCAGTTAAAACAGAAGCTTGAAACAGAAATGGACCCTGCGAAGGACAGTCTGCGATACTATCTTCTCGGAGCAAACTGGAAGAAGCGAGTAGAACATGTCGGAGCTAAAGAAGGATACGATCCGGAAGGGGTATTGTTACTTTAGCAAGCCTAGGTAAAAAAAGTGCGAACCCCAAGCTCACATGAATTCCCTAGGAGGTTCGCACCCGTTGCTACAGGTGGCTTTTCGGGCTTTTCCTACAATTATTAACCCAAGAAAAACGGTCAGTTATTGAGGTTCGCACTTTTAAGCCTCGGAGCCCTTTTGGGATAAGCCTTTTTCTGGGGCCA # Right flank : TATAGGATATTGTGCGGAGCGGAATATAGCCATTGCCTTTATGACGATGAATGGAAGATTTCTGCCAGAGTGATCGGTGCGAGTAAAGGAAATAAATATATAACCACAAATGGATGCTGGAACGGATGACACGGGATTACCCGCTACGTGTTGATGTGGACCAGTTCAAAGAGGCTTCAGCCCAGTTATCTGGCACCATGGACGCCATTTGGGAATGCGATGATCTAGAACGCTTGCGTGGGCTAGAGGGACAAGCGGCACTTAGCTATAATAAGCTGTGGGATCATATGATTTTGCAGCAGAAAGAGGACTTTCAATTTCATACTCGCTCTCGCCGCCCTCCGCTCGATAAGGTGAATGCCATGTTATCTCTGGCTTATACCTTGCTGGCTCATGATATGGCTTCAGCATTGGAAGGGGTTGGGCTGGATGCTTACGTGGGGTTCCTGCATCGTGACCGTCCTGGACGTGCCTCGTTAGCGCTTGATGTTATGGAGGAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCCCCGTACGGGAGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.80,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,1.01 Confidence: MEDIUM] # Array family : NA // Array 2 124338-124899 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLQJ010000013.1 Paenibacillus sp. MSJ-6 Scaffold13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 124338 32 100.0 34 ................................ AACGCATGGGGGCAATCTTTAGGGCTTATATATG 124404 32 100.0 34 ................................ CTGCCGAGAAGCAGCTGGTCTGACTCAAGCTCAG 124470 32 100.0 36 ................................ TCGACGCTGGATATATAGGGAATCGGATCAACTAGC 124538 32 100.0 33 ................................ TACCAGGATACCAAATCCCAGCTGTATTTATTT 124603 32 100.0 33 ................................ ACTAAGATCTCCATGTAACGGTGCCACATCCGA 124668 32 100.0 36 ................................ GGAATATGGTACAGTGGGTCAATGGCAGACAGTCGG 124736 32 96.9 33 ..............................G. GGAACTCGCGAACAATGTAGTAAAGGTATCTGT 124801 31 93.8 35 .......T......-................. CCGGCATCGATTAGAATCCCGGTGGAGCCGCTTTG 124867 32 81.2 0 .................C....T.C.CCC... | C [124889] ========== ====== ====== ====== ================================ ==================================== ================== 9 32 96.9 34 GTCGCACCCTACGCGGGTGCGTGGATTGAAAT # Left flank : GTAGGTGTATGAATCATACTGGTACTTATCACTTATGATGTAAGCACAACGGATTCGGCAGGGCAGCGCAGATTGCGACAGGTGGCCAAGACTTGCCTGAACTGCGGGCAAAGGGTGCAAAACTCTGTGTTTGAATGCATCGTGGATGCCGCCGAATGGACATCCTTGAGACTACGTCTGCTAGAACTCATTGACCCGGAGCAGGATAGTATCCGCTTCTACCAATTGGGTAACCAGTACAAGAACAAGATAGAGCATGTTGGTACGAAATCATCTCTTGATCTGGAGGGCCCACTGATTCTCTAACGGCCAAAATAGCATAAAATAGGCTGGTGCGAATGTGAAGCGAACATGATTTCCTTAGGGGATTCGCACCAAAATAAGTTACTTTCATTTGATTATATGTAAAAATATACAATTATCTGAACGATTTTTGATGGTATAAGGGCTCAAGAAGGCCGATTAAGCCGGATAACACCCTTATTCTGTTAAAAATCGGA # Right flank : TATTAACTTAATCAAACAGCGGCAGTCCGGGACGTCTATCTTTCGTCTGAGGCTGTCGCTGTCTTTTTTCAGATCAGAACAAAAGTCCGCCGGGATTCTGTGCGGTTCCATTCAGTCAAATATTTAGAGTTATAGGTCATATTATTGGAGCGGCCAAGAGAAAGTAACAGCTTATAATGTTAATTTGGAAGCGCTTACTTTTATAGAGGTATTTTGAGCGAGAGGAGGTACGAAAAGATACGAAAATGGGCTTGAGAGAGCTAGTCCGGCATTTATGAAGTGATTGGCAGATGTATCTGGTTTACAGAAATAAAACGAAGGGGAGATGCAAATTGGGCAAGAGCTTTCGACAGTTTTTCGTGTTCGTTCTCATTGCGGCGCTTGTAAGCAGCGCTATTCCGGGAGGAAAGAGTTATGCTTTGGAGACAAGCGCTGCAGAACCAGGATTGATGGCCTGGTACAAGCTGGATGCGCCATTCGACTATGACAATAAGCAGGTT # Questionable array : NO Score: 9.11 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTACGCGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.50,-8.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 78313-77832 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLQJ010000004.1 Paenibacillus sp. MSJ-6 Scaffold4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 78312 32 100.0 34 ................................ CTCGATTTGACTGTACCTAATCGCACCTTTAAGC 78246 32 100.0 34 ................................ ATTTAAATTACTCTCGATTTCTTATGTTTTCGTG 78180 32 100.0 34 ................................ GCTCCATAGATGATTTGCTCCGGATTTATGAAGA 78114 32 100.0 34 ................................ TATGGTTGAGACTATGAAAAAACATTTTGTCGGT 78048 32 100.0 35 ................................ CTTCAAAGCCAGCAGGTGCTTCTAGAGCATCTTAA 77981 31 87.5 20 ........................-...TT.C GTGCACTCACAAGCTCCCAC Deletion [77931] 77930 32 100.0 35 ................................ CAGAAGGCGAATAATGAAACGCCGAAGGGATTAAT 77863 32 96.9 0 ...........................A.... | ========== ====== ====== ====== ================================ =================================== ================== 8 32 98.0 32 GTCGCTCCTTACGCAGGAGCGTGGATTGAAAT # Left flank : TAGAAATTGTAAGATCCCATCAGCCAAGCGGGTGAAAGGTTGCAGCCTGTTTGTCTGGAGGGAGGGGATTCTGTGGTAGGAGATTAGTGTAAGTTTGAAATCAATGGTGACAAGTAAAAAAGTATTCCAATTAGGAAAAATCATGAGTGGCTTCCGGGAAAATTCGGAAGCCTTTGTTGGTATGGTACAATGTATCTGAATTAGATATTAGTAGAATTACATTTATTCATAATAAAGAGGCATAAGATAGATTTCATCCGCACTATAAAGTTTAATCGGGCATTTAGAAACCAAAGCATTAAGTATCAAAACATTAAGCACCAATACATAATAGTGCGAACCCCAAGCGAACATGAAATCCCAGGGGGATTCGCACCTCGCGGCTGACGCGGGATTTCGGGATTTTGCTAACATATTTTGGTATTTCCCAAGCCTTGAAAAAGGGATTCGCACTAAAACGCTTGCAAACCCTTGCTGCACAAGGGCTGAAATCGCCCGGA # Right flank : ATCTGCGGTAGCTCCATTATTTTTGTAAGGGCATAAATTGAATTCTGTCTATTGTATCATTTGAGCACCAAGTAGAGGGGATCACTGTACTGGGATATAAATAAAAAAGAGTTCCTTGTCGTATAAATGGAGGGACCTAGTGCTGGGAAGGAGAGCTCCTCTTTTTGCCTTGTTGCAGAATTCTCCTTGCAGGAGCGCTATGTTATGATGGGAGAATAACTATAGACGGCTTCTAAGCTGGAGAAGAGCGAAAGGAATGAGTGTAATGAAGCATCCTTTTCATCTGAAAGCAGTATGGAATGGTGGACGTAACAGTGAAGGCTATATAGATGCAGGCGGTTTAAAAACGGTGATATCGATTCCGCAGGAGATGGGCGGTCCGGGGACAGGCACAAACCCTGACGAAATGCTGCTGGGAGCGGCGTCGACCTGTTATCTGATCACTCTGGCAGCGATGCTGGAGCGTGCAGATATTACACCCCAGGAACTGACGCTAGAGT # Questionable array : NO Score: 9.03 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:-0.12, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCTTACGCAGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.00,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.01,4.91 Confidence: MEDIUM] # Array family : NA //