Array 1 94570-95695 **** Predicted by CRISPRDetect 2.4 *** >NZ_MLVS01000005.1 Salmonella enterica strain CFSAN045008 CFSAN045008_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 94570 29 96.6 32 ..........T.................. GAACGAGTAATCTTTGTTTTCCCCGTACCTTC 94631 29 96.6 32 ..........T.................. CGAGGATAGTTGTACCAGGTCAGGCCGCGCTG 94692 29 96.6 32 ..........T.................. CAAAATCAAAATTTCGAAATAAATGATTGGAA 94753 29 96.6 32 ..........T.................. TCAAACGGTTCTGGAACATCTAAAAATACATG 94814 29 96.6 32 ..........T.................. CTGGCTGTCTGCGTGATAAATGCAGAGTGTGA 94875 29 100.0 32 ............................. CAGGAATTGGGGATGTTACCTGAAGATGTGAA 94936 29 100.0 32 ............................. TTCAGAACGATTATATTTTGATTTGTGTTCAG 94997 29 100.0 32 ............................. ACCGAGAGTGACATTTTCCCACTACTGGCTGG 95058 29 100.0 32 ............................. GACGCCATGCGCTACGTAGCGACGCGTGTTGA 95119 29 100.0 32 ............................. GAGAGTCGTGGTGAACTGGCAGTGCTCCGGTG 95180 29 100.0 32 ............................. AGATTGGCTATTGCGGTAGCATACTGACTCTT 95241 29 100.0 32 ............................. ATTTTTTGCGGTTCAATCAGCTCATACCACAG 95302 29 100.0 32 ............................. ACAAAGCCAAGCGCTATATGGCCGGTATTTTT 95363 29 100.0 32 ............................. CGCAATGAACTTTGTCGCGCCGCGAGGCGTGC 95424 29 100.0 32 ............................. ATGGTAAATATGAATTTAATGTCTATCCTGGG 95485 29 100.0 32 ............................. CCATGCTCCAGGGTAGCCAACCTGCAAGTAAT 95546 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 95607 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 95668 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGTGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTGATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGTGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 111954-114060 **** Predicted by CRISPRDetect 2.4 *** >NZ_MLVS01000005.1 Salmonella enterica strain CFSAN045008 CFSAN045008_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 111954 29 100.0 32 ............................. GCGGACTCCTGCACCTCTTTGAGCCCGTCGAT 112015 29 100.0 32 ............................. TCAGCGTAGGTTGTTGATGTTCCCACCAGCCC 112076 29 100.0 32 ............................. GCCACAATCAGATCGAAACGCTCCGGATCACC 112137 29 100.0 33 ............................. TTGTCACTGCCCCTGTTGAATCAATACAGCCAC 112199 29 100.0 32 ............................. CAGGTCGGTTATCTCGAAGCTGCCCGCTCTGC 112260 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 112321 29 100.0 32 ............................. GGGCTATATCCACGCCAAAGGGCCGCGCGACA 112382 29 100.0 32 ............................. CCAGGCACTAACTCGCAGTATCACTCCCTGCC 112443 29 100.0 32 ............................. GTCATCGCCGGTGAGGTATTTTTTTGGCTTAG 112504 29 100.0 32 ............................. GATAGCGCGGAAATTGCCGAGGTTATAGCTAA 112565 29 100.0 32 ............................. CGTCCAATACGAGCCGAGTGCTCACGCCCTTA 112626 29 100.0 32 ............................. TTGAGGAATTCTTCCCGCAACGCCTGTTTGTC 112687 29 100.0 32 ............................. CCCTGCCCGGCGATTGGATTATTCGCGGTGTT 112748 29 100.0 32 ............................. GGGGCTATTGAGGTTTGCCAGCACAACCTGTC 112809 29 100.0 32 ............................. TTCCACGCGTCGTCGTCAAACCTCGATTTCGG 112870 29 100.0 33 ............................. CAGAACCTGGCTGATGAGGAACTTTCAATCTGC 112932 29 100.0 32 ............................. TGCGATCTAATCTCCTCTGGCGTGACTGTACG 112993 29 100.0 33 ............................. TTGCCAGCCGAGGCCGTTACCGTTCGCCAGAAC 113055 29 100.0 32 ............................. CGCTGAATTCCGATATTCCGCCGTATTGCACG 113116 29 96.6 32 ............................T TTACGCAATATTAACAGACCAGGGAGCAGCGC 113177 29 100.0 32 ............................. GGGTTATCTCCCTGCCGTTAAAACGGACGTTT 113238 29 100.0 32 ............................. CTCATTTGCCTTGCTTGATGACCACTGCGGTA 113299 29 100.0 32 ............................. TCATCGAGTACGGAAAATCCGTTTTTATTGTA 113360 29 96.6 32 .............C............... CTACGAAGGCGTCTTTATGGCGCACAGTACCA 113421 29 96.6 32 .............C............... CCGTCCAGCTCCACATGCTCGCCAATCTCCTG 113482 29 96.6 32 .............C............... GTTGGCAGCATGATCGCTAAATCTAAAATGCC 113543 29 96.6 32 .............C............... TTAGCCATCCCCATACCAAAGTTAAAGTCGTA 113604 29 96.6 32 .............C............... CCTGGCAAATTATTTCCTGGATACTCGATATC 113665 29 96.6 32 .............C............... GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 113726 29 96.6 32 .............C............... GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 113787 29 96.6 32 .............C............... CATTCGCTCAATAGCGGCCCGCGTGGCGGTGA 113848 29 96.6 32 .............C............... GGGATTATGTCCTCTAAAGACTGGCTAATCAC 113909 29 93.1 32 .............C...........G... TTGAATACGTCGCGATACCAGTCACTCCGGAA 113970 29 96.6 32 ..C.......................... AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 114031 29 89.7 0 A...........TC............... | A [114057] ========== ====== ====== ====== ============================= ================================= ================== 35 29 98.4 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGCAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //