Array 1 48-544 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTUK01000084.1 Enterococcus faecalis strain CVM N59609F N59609F_S16_L001_R1_001_contig_84, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 48 36 100.0 29 .................................... TGGTTAAAAAGGAAGCCATCAAAGAGACA 113 36 100.0 30 .................................... TGGTTGCCGTCAGCACCATCAAGAGGAACA 179 36 100.0 30 .................................... TTTGAAAGACCAAGAATAACTGGTACATCC 245 36 100.0 30 .................................... TAATAACTCGTTTAGAAGGTATATGAAGTG 311 36 100.0 30 .................................... TTAATTTGGCGAGAAACCGCAGAATAAACA 377 36 100.0 30 .................................... ATATTTCAGCGCAAACGTTAGAAGAATTTT 443 36 97.2 30 .............................T...... CAAAAAGCGGTTAATGATTATGTGTTTCAA 509 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 99.7 30 GTTTTACTGATAAGAAATTATTGAGAGTACAAAAAC # Left flank : ATTGAGAGTACAAAAACTATCTTTAATAGTTTCTAAATCTGGTTTTTG # Right flank : CCTCAAATTTAAAATTTGAAATCTCATTAATAATCCTTTTGATAAAAAATATAACTTTACGCGGTTAAAATTCCAGACTCACTCTTTCCGCAATAACCGTTCGCGAAAATATTGTTCTTCCAATACAGTGAGCTTTTCCATCGACGTCTCGACACACTCACTATTGTCGTCTAACAATTCCTTCAACAATTTTAATAATATCATATCTTTAGGTAAAAGATAATTTTTTGTATACTGATCACCAACAAAATGACAGACTCGATAAAAAGCATCAATTAGTTGTTGATTTGTCCAAGAGAGTTGATCTGGATAATGTCGCTCAATACTTTGACGAAAAACATCAAAAACTGGCAACTGCTGATACTTATCATATAACAAAATCGTTTTCTCAACATCTTCCTCCGTATACGGTAAAGGCAAGCTTCTATTACTAAAAATAAAAAACTTCAACTGCTTTGTTTCTTGAGCCAATTTCTTTAGCTGCTGAAAGAGATAATAAA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTACTGATAAGAAATTATTGAGAGTACAAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 1-959 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTUK01000036.1 Enterococcus faecalis strain CVM N59609F N59609F_S16_L001_R1_001_contig_36, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1 36 100.0 30 .................................... AAAAACCAGATTTAGAAACTATTAAAGATA 67 36 100.0 30 .................................... GCTTTTTCTCCTGCAAACTCTTCGATCTGA 133 36 100.0 30 .................................... CAACTAGTTCAGTAATTTCGCCTTCACTTT 199 36 100.0 30 .................................... AAATCACGAGAAAGAACGGCTTCTTAGAGA 265 36 100.0 29 .................................... TTTTTCTCTTTTTCGGTTGTTAGCTCTGG 330 36 100.0 30 .................................... AAACGATACCTTATACCATTGAATATAATG 396 36 100.0 30 .................................... CGTTCCATTGCTTTAAACTAGTATCGGAAG 462 36 100.0 30 .................................... AGTTCGCTTATTCCCATCATGGCACAGACC 528 36 100.0 30 .................................... AAAACAAGTAAAAGACGTGGGTAATCAGTT 594 36 100.0 30 .................................... TGGAACATGAGAGTGGTTTAAACCCTGCTA 660 36 100.0 30 .................................... GCACCTAGAACGACGTCAATCGGTTGGTTG 726 36 100.0 30 .................................... GCAAAATGCCCGCTGCTATCTATTCAACGA 792 36 100.0 30 .................................... TAAAGATGGCAATCCTAAGCCAAGGCTTGA 858 36 100.0 30 .................................... ACGTGTCGTCGTAAGTTGTTGCAGTCCATG 924 36 97.2 0 ..........................C......... | ========== ====== ====== ====== ==================================== ============================== ================== 15 36 99.8 30 GTTTTTGTACTCTCAATAATTTCTTATCAGTAAAAC # Left flank : | # Right flank : CAATAAGGAAGTAGGTTGGATGTACAAACTCGCTTTTATACCCCAAATAATTTTCAAAAAAGCCATCCCCACTAAATGTTTAAATATAGTCATCTTTCTAGCATAATTATTTGTATCTGAAGCAACAGCCAAATTGGCTTCTTCAGATACTTTTTGTTATTTAATTTAAGAGTTTTCTCAGTTGTACCAACAAATTGATAACTTATAATTTTCAAGTCCTACATATAATGGTAAAATAGAATAGATTGAAATTAATTGGAGGAATAATGAATCGATGAAAAAAAGATTGCTATTATTTATTGGTTTGGCAAGTATACTTACTTTGACAGGATGTGCAAAATGGATTGATCGTGGTGAATCCATCACAGCGGTAGGCTCATCAGCTTTACAACCATTAGTAGAGACAGCGAGTGAGGAATATCAAAGCCAAAATCCGGGAAGATTTATTAATGTCCAAGGTGGCGGAAGCGGAACAGGTCTGAGTCAAGTCCAATCTGGCG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAATAATTTCTTATCAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 9940-9771 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTUK01000064.1 Enterococcus faecalis strain CVM N59609F N59609F_S16_L001_R1_001_contig_64, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 9939 37 100.0 29 ..................................... ACAATTAGCGCCAGCTGGCCAGATTCAAT 9873 37 97.3 29 ....................................G ACTTACAAAAGACTGTGATTTACGTTATA 9807 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================= ================== 3 37 99.1 30 GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACA # Left flank : TGTATATCCTCATCAAGTAGTAAATGCTTCTTTTGACTTTCAAGAGGGACGAACAACAGAGGGTGGAGAAATGACACACATGATTGGCTTTGCCACTTTGCAAGAAAATACCTATGAAGATTTGGAGCAACTAAGCGTACCTGCTCATACATGGGCGGTTTTTCCAAATGAAGGTCCTTTCCCACAAACTTTACAAGAAACCTGGGCAAGGATATTCTCTGAATGGTTGCCTTCATCTGGTTACCAAGTCGTTGCAGCACCAGAAATTTCGTTTACGCAATATCAAGGACCAGCAGAAGCTAAGTATAGTGAAATCTGGCTCGCTGTTACAGCTACTAAATAAAGAAAACCCACCATTGAAAAATGGTGGGTTTTTCCGCCAAGAAGGAAAAAGTTTGGTATAATAAACGTGAAGAAAAAAATTAGACCTTCTAAACTGAAATCTAGCTATGGATAAGTGATGCGACTACGGAATCATGGAGAAAAAATAATTCTCCGAG # Right flank : AACTTTTTTGATTTGGCTTTTTCTCCCCTGTTTTAGAGCCATGTTGTTAAAAAACAAACTATCACCTCAAGCAATCCGTAATTTTCATCACAAGATTAGAATTTTTATCATCAAAGACGAGCTGCTTCAATTTTCGAAAACTAATCAAGTGATAAGTCAAAATGTTGATAGATTGAGATTAGTTCTTCCTTTTTTTAGGAAGGGCTTTTTTTATTGATAGAAGAACGGGAAGAAATCTTGGTAGCACCTAAAAAAATTGTGAGAAATGCTTCTGTATTGTTTGGTTTCTGCCTCAGAAAGTTGTATACTTAGATTGGAATTATTCTATATTACATGCATTTTCACACTTTTTGGAAAAGTTCACTTGAATTTTCTTTTAGTTTCGTAGATAAAAGGAGTCATCGCTAATGGAAATGAACAATTCAGGTAAGCTTGTTTCTTTGTGTGGAGGCAAATCAGGGAGGAAATAATATGTTTGATATTGTAACATTGGCGAGAAT # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //