Array 1 29303-30723 **** Predicted by CRISPRDetect 2.4 *** >NZ_JFKB01000025.1 Thalassospira alkalitolerans strain JCM 18968 contig25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 29303 36 97.2 30 A................................... CCGCTGCCAGACTGGCCGCGTCTCATGTCA 29369 36 100.0 30 .................................... TCAATCCCCTTTTTTGTATTGCATCCAATA 29435 36 100.0 30 .................................... GGCCTTCCAGCCGATCAAACGGTTGATCGT 29501 36 100.0 30 .................................... GCACTGATTGGATACTAGACACAATAGATG 29567 36 100.0 30 .................................... ATGAGTAATAACAGCACCACCGGCATATTT 29633 36 100.0 30 .................................... GGCTTAGAAGGTCGTTCGGCTTTTGCGCGA 29699 36 100.0 30 .................................... GGGGCGGCTATCATCATTGGCGGCCTGCCG 29765 36 100.0 30 .................................... TTCGATCCGAGAAAGCTCCGCCTTCTTGTA 29831 36 100.0 30 .................................... AGCCCGATGAAACATAAGCGTTGCTGTGTT 29897 36 100.0 30 .................................... AGGAACTTCTGCCGGGGTTGATTGTGTTTG 29963 36 100.0 30 .................................... GAATACATCGCGCTATATGGCGAGGACTTA 30029 36 100.0 29 .................................... TGATGTTCAGCACATCATAACCAGAATAA 30094 36 100.0 30 .................................... GTTGTATTCGCCAACGCCATCTTCGCCTGC 30160 36 100.0 30 .................................... GCGCAGAAAGGGCAGGAGCTTTCGACACTT 30226 36 100.0 30 .................................... GACCTTGCGCAGGAATACGGAGTTGACCCA 30292 36 100.0 30 .................................... GGTAAGATGGTCGTACATCACATTGTATGC 30358 36 100.0 30 .................................... GTTGTATTCGCCAACGCCATCTTCGCCTGC 30424 36 100.0 30 .................................... GCGCAGAAAGGGCAGGAGCTTTCGACACTT 30490 36 100.0 30 .................................... GACCTTGCGCAGGAATACGGAGTTGACCCA 30556 36 100.0 30 .................................... GGCAGCCCGATGGGCCTTAAGGCCGAGACT 30622 36 100.0 30 .................................... GTCACATCACCAATCACAGAAAAACCAAAA 30688 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 22 36 99.9 30 GTTGCGGTTGGACCACAATTCTTCTTCTGCTAAAAT # Left flank : ATTACCTTTATCTGGCGCATTCAAAATTGCGCGCCTGTTCGATGGGGCCGGAATTGCTTTTGGGCGATCTGCCCAGCCATGTCGAAGGCATGTCGCGGGTTTATCGCGATGGCAAGGTGATTTGGGAAAAACCGTTTGTTAGTGGCGAGGACAATATGTCTCACAGCTTGGCGAACCTTGAATACCATCATTTCAAATATGATTTGTTTTGCCGCCCGGGCGATGTGCATGCGCATTTCTTTGGCACGGCAACGCTGAGCTTTGCCGATGGCATTACAACGCAGGATGGCGATCAGTTTGAAATCGAGGCCGCCCCGTTTGGCCGTGCGCTGCGTAACCGGCTTAAAGTGCAGGCGGAACGCAAGGTGACGGTTAAGGCGATCTGATCGGCAAGAGACACCAAGATTTTATCAAGGGGCAAAAGCCCTGTCTCCCTCCAGAGCGACCACTCCCCGGCTCAAGCAATTGGGCCGGTTTTTTTTTGTTTTCGGGGTGGGGGC # Right flank : TAGCCTTTGGAAAAGCCCCTGATTTCAGGGGCTTTTTTGCGTGTTTGACAGGGCAAAAACCGGTATTTTCAGGTGTCAGAACAGTTCGAACTGGCCGGGATTTTTTCGTGAATCCTGTTTTGTTCTTCCGGTGTAAGAAACGATGTTTTCATATTGTTTGTCGGTAAAATACAAAATATCGACTTTGCCGCCACTGGGCAGTTTGGTTCGGACCTTGCGGGTTATGCTTTCGGATTGTTCCTTGCCTGCACAAAACCGCAGATAGACTGAAAATTGTGCCATTTCAAAACCAAGATCAAGCAAATGGGTGCGAAAGCCGGTTGCGGCCTTGCGTTCCTTTTTGGTCATCACCGGCAAGTCAAACAACACCATGATCCACATCATCCGATATCCCGATAGCATGATCAGCCCAATTCAAGCGGCAGGGGGGCAAGAGGCAGCGTAAGTTTTTCGATGTCGCCCAGATAGCATTGCGCCAGTGACCCGGCGAGGCGATGTAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGTTGGACCACAATTCTTCTTCTGCTAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTGCGGTTGGACCACAATTCTTCTTCTGCTAAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.70,-0.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.68 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //