Array 1 2675105-2663460 **** Predicted by CRISPRDetect 2.4 *** >NC_014720.1 Caldicellulosiruptor kronotskyensis 2002, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================== ================== 2675104 29 100.0 37 ............................. GAAGCCAATTGGCAGCGGGACTAACCCTGCTGACCAA 2675038 29 100.0 37 ............................. GGAAAGATAAGGTTTAGCTGATTTTTCGGAGATATCA 2674972 29 100.0 38 ............................. CTAGAATCTCTGTACTCTTCTTCATAAACAACTTCTTT 2674905 29 100.0 37 ............................. TTATAACACCCTATGATGTCAGGAATACCTCTTCGTT 2674839 29 100.0 36 ............................. ATACTCCCGACCGTTTTTTTAGCGTCTCAAAAGTTG 2674774 29 100.0 37 ............................. AAATACCCCTCGATGATATAGTTGAAATTATACGCCT 2674708 29 100.0 36 ............................. CATCTTAGAAATAAATAGTGAAAGTGAATTTTTATA 2674643 29 100.0 36 ............................. TTAAAATAGCGTCGTGAACTGTAGCAATAATATGCA 2674578 29 100.0 38 ............................. ATAAGAGCAATAGCTACTAATGTTTTACCGGTACCCTG 2674511 29 100.0 37 ............................. GCAATAAATAATTATGGGTTCAAGGAATAGCAACTGA 2674445 29 100.0 37 ............................. ATATATAAATGATCATCTTATGCTTCAAAGATTGTTA 2674379 29 100.0 39 ............................. GCTGCATCAGAAGTGTCGACAGTTTTTAAAAATTCAACA 2674311 29 100.0 38 ............................. GCATTGTTGTTGGGCGACAGGGTTAGCGTTGTAGATAA 2674244 29 100.0 36 ............................. ATTTTGAAGATTTTTATAAGCGTCTGTTTGAATGTA 2674179 29 100.0 39 ............................. TAATCTTTTGTTAACAGCTCATTTATTTGCTGTTGCACA 2674111 29 100.0 37 ............................. TTTTTTACATTAGGTGTTTCTAACTGGGATCAGGTAA 2674045 29 100.0 39 ............................. TTTTTAATTTTTATACTAAAATCTTGAATTTTTATACAA 2673977 29 100.0 35 ............................. TTTTATACGCGACTTTTTGTTAGAAATGGCTTTTA 2673913 29 100.0 36 ............................. TCGGTAAAAGGTTCTTGGACTTATGTCGCATTCTTT 2673848 29 100.0 38 ............................. AAAATTGCTATATGAACGTTTTTAGTGCATTGTTCAAA 2673781 29 100.0 38 ............................. AGAAGGTGAAGTACAGACAATAACACTTACAAACACTC 2673714 29 100.0 37 ............................. GCAAAGATGTGAAAATGAACATCTGTCAGTTGGTAAA 2673648 29 100.0 38 ............................. GAGTTAAGAAATGTTGGTAACAGTAAGGTATGTACATT 2673581 29 100.0 35 ............................. TACGTCTGGCATGTATTGTTTAATAAACCGTATTG 2673517 29 100.0 37 ............................. TTCTACACAATCTAAGTATTTTATTTTGTTTTTTGTC 2673451 29 100.0 38 ............................. GCTAATGCGAAAATAAAATTTGTAGAAGTAATTGCAAG 2673384 29 100.0 36 ............................. TGTTCTTATTTTGATGCAATTTGATTGGCAGGATTT 2673319 29 100.0 38 ............................. TACTGTCCCAATAATTCAACAACTTTGTTTCTATCTTT 2673252 29 100.0 37 ............................. ATTGTCATAGTTTTTAATTCAAAATCATATTTGTGAA 2673186 29 100.0 38 ............................. ATGCAATCTTGGGATAAAAGCGATAGTCAATGTATTGG 2673119 29 100.0 38 ............................. TTTCTATAAATTCTTCAAGTGTCATCTTGAACTCTTTC 2673052 29 100.0 35 ............................. TCTTGTGTCGGTGGACTTGTATGTATGCTGTTATG 2672988 29 100.0 36 ............................. GCTTATCAAGATACTTACATTCAAGCAACAAGAAGT 2672923 29 100.0 38 ............................. AACAACGTTCTCGTAAACACGGCTACTAAATTGAAAAA 2672856 29 100.0 36 ............................. CACCTGAGAAGCTTGATAACAGTTCATCCCAAACAA 2672791 29 100.0 36 ............................. CTTTATTAGCACGTCGCGATTTGCCCTTGACTTCAA 2672726 29 100.0 37 ............................. GCCTATTGAATTTATAGAAAAATTCTGCAAACACTCA 2672660 29 100.0 38 ............................. ATTTTTGGGACAATGATAAACTTGCTTAGTGAAATAAA 2672593 29 100.0 36 ............................. CTTAAGGAAAGAAAACAGATAATTATAAACGACCTT 2672528 29 100.0 37 ............................. CCTTTTGCATGAGTTGTTTTATGTGCAAAGTCCGTAA 2672462 29 100.0 37 ............................. TGGAATCCTGCAACAGAAACTGTAAGAGATAAAGTTA 2672396 29 100.0 35 ............................. TGGAACTGTCCCAAAAGACCCTGAAGTGTACAAAA 2672332 29 100.0 35 ............................. CTCTGTTTGCAATATTCAATAAACCCTTCTGCCAA 2672268 29 100.0 37 ............................. GGTCTACCGCAGCGTTCACACAAACCATGTTTGCTTA 2672202 29 100.0 37 ............................. GTTTTAAAATGGGCACTTACAAACTTGCAAGTAGAAG 2672136 29 100.0 37 ............................. GTAGTTTGAAGTAGTCTTTTTTGTGGTCTAACAGATT 2672070 29 100.0 34 ............................. ATAAATCAGAGAGAGAGATGAAAGACTATCCTTA 2672007 29 100.0 37 ............................. AATAACTTCTTACCTCATATTGTCTTTAAAAGAAGCT 2671941 29 100.0 38 ............................. AATTATCTGTAAGTGCCACAATTCGCAGGCTTTTGTCT 2671874 29 100.0 38 ............................. TCAAGTAAGAGTGTCGTCTGTCTCGGCTCAAACCACCA 2671807 29 100.0 37 ............................. GTCAGAGATGTTGAAGCTCTAAGACAAGACTTTGAAG 2671741 29 100.0 37 ............................. GTTGTTGCAAAGATTGAAGCTATTTTACCCCAGTTCT 2671675 29 100.0 37 ............................. TCATAGAAAGCCGGTGTAATGACTTCGGATATTTTAA 2671609 29 100.0 38 ............................. ATTTTTGGGACAATGATAAACTTGCTTAGTGAAATAAA 2671542 29 96.6 36 ............................T ATTGAAGCGGTGATCGATGTAGAAGAACAACACAAG 2671477 29 100.0 37 ............................. GCAAGAATATATTTTGACAAGCAAAACTCAGCTCCCG 2671411 29 100.0 37 ............................. CTTTAGTTATTCTTTAATTAGTTTTTAAAAGAGACCT 2671345 29 100.0 35 ............................. ATCAATGAAAATTGGCAGGATTTTTTTCATGTCTT 2671281 29 100.0 37 ............................. CACTTTGGATGAGGTTGGTAAGGAATTCAATGTGACA 2671215 29 100.0 36 ............................. GGTTTAAAGTCAATTAATCCTGCTTGTTTTAATCTA 2671150 29 100.0 36 ............................. CTTGGCTATGACATTGTGGACAAGCAATATGTAATA 2671085 29 100.0 38 ............................. GGTGAATACGCAGAATTGATACAAAAGGTTCAAGAAGT 2671018 29 100.0 36 ............................. AATGACCGAATAGCACCGCCTGATGCACCAGAACTA 2670953 29 100.0 37 ............................. TACCAAACAAGAACTGCTCCTGTATACACTCCAATAA 2670887 29 100.0 38 ............................. GAAATAATTTCTCATATTTATGTGCTTCACTTCATACT 2670820 29 100.0 37 ............................. ACTTGTAGCGGCGCTATCTTCTTTCGCTTCAACAACT 2670754 29 100.0 38 ............................. TTATTGTTTGTCCTGTATTTTGTAAATTTGGCTTATTG 2670687 29 100.0 37 ............................. ATCGTTGGGGCGGTTCGGGCTGGAACAAATGGTACGT 2670621 29 100.0 36 ............................. GTTTCTGGGCAAAACTGAACATTACGAATTCGACAT 2670556 29 100.0 37 ............................. TTTCATGAAAAAATACGACGTAGTTCTACTGGACGAA 2670490 29 100.0 36 ............................. TGGTTTGCTTTTCAAGAAAGTGAAAATAAAGGGATA 2670425 29 100.0 36 ............................. GTTTTTGAACAGCCGAGGGTCGAAAACAACATTTCC 2670360 29 100.0 38 ............................. TTTTTACTAAAGCTGCCTTAATTGCTTTATTTGCAATG 2670293 29 100.0 38 ............................. TTTTTCTTCAGCTGTCGTTTATAAAAGGCGCTGTCATA 2670226 29 100.0 35 ............................. AAAGAGAATATAGTGCTCTTGTTACTGTTATTATT 2670162 29 100.0 37 ............................. AAGAGGGGATTATCATCTCGGCAGTTGACAGCATGGA 2670096 29 100.0 36 ............................. AGTGAGCTTTACGCAATTGTCGAGGAAATAAAAAGG 2670031 29 100.0 38 ............................. CTTATTACCAGCTTCACTGTTGCGCCTGTTAAATCCAG 2669964 29 100.0 39 ............................. AATCTGATTTTAAGCTTAATGTCGTTTTCCTGATATCTA 2669896 29 100.0 36 ............................. AAAGGAAATGATGAAAAAACTTAAGGAAGGTTTGAA 2669831 29 100.0 39 ............................. TTCTATCCTTCTACAAGCCATTATCAACGCTTTTTCTTG 2669763 29 100.0 39 ............................. CTGTATACCCTTTTCAGCGTCCAGTAGATACGTCGTCCA 2669695 29 100.0 36 ............................. AGTTTAACGCACATCTCATTCACCTTCTCTTCTATG 2669630 29 100.0 39 ............................. TTCCTCAAGATTCTTTAGCCTCTCCTCATGTATCCCAAG 2669562 29 100.0 37 ............................. ATCATAAAAGGCGTTGAGTTGTTTTATATAGTTCATC 2669496 29 100.0 39 ............................. ACTAAAGAAGGACCCGGTTCTGAAGCAGATAAATGGATG 2669428 29 100.0 37 ............................. TAGTTGTTGCCTCACCACATATTGGACATGTGGCCTT 2669362 29 100.0 38 ............................. TTCAATATCATCTCTTGCCTTAATGGCTTCACTGGCCT 2669295 29 100.0 36 ............................. AAAAAGTATAGAAAGTAGGTGATGTTTTAATGGAAG 2669230 29 100.0 36 ............................. TACGCATACTTTGAGCCGCAATCGCACAGGGAAGCA 2669165 29 100.0 36 ............................. TTTAATTACACCTGCGTCTGCGTCTGGTAGCATGTT 2669100 29 100.0 38 ............................. CTGGATAACACATTTCTATAAGACGGTCATAAGTTCTT 2669033 29 100.0 39 ............................. GTGTTTGGTATGTATTCATGTGTAAAAGAAGTTTTACTG 2668965 29 100.0 38 ............................. GCAAGAGGTCCTTGCCTTTACGGCAAACTTAGAAGAGA 2668898 29 100.0 37 ............................. AAAACAGTCGTGGCAAGTTCTGTTGGTTTGCCACCAG 2668832 29 100.0 38 ............................. GATACTTCAGTAAAAGTCGGTTTAATATCAAGTGCATA 2668765 29 100.0 36 ............................. AGGGGAAGAATAATTGAAATTTATGGAGTTGAGGGA 2668700 29 100.0 36 ............................. ACAACTGCTCGACCAATACTAAGTTGTTTTCTTCTT 2668635 29 100.0 36 ............................. ATGCTTTTAAGTCCTTCTTGTTAAGTACCAAAACTG 2668570 29 100.0 37 ............................. TGATTTTTTGCAACTGTTTCGCCACAGTTAAGCTCTC 2668504 29 100.0 37 ............................. GATAATATGTCTGGGTATGTTACAGAAAAGAATAGGT 2668438 29 100.0 35 ............................. ATTCTTAATTTTTTCTCATTGCCTGGACCATCCCA 2668374 29 100.0 37 ............................. TATCTTAAATTTCGTGCTTTGTCAAGCTGTATTACAA 2668308 29 100.0 37 ............................. TTCCTGCAGTTGAAATTGTCGATACTATCTTACCCCA 2668242 29 100.0 35 ............................. ACAGAGATTGCTGAAATCAATGGGCAGACGTATTA 2668178 29 100.0 36 ............................. TACAATGCTGGATATTACTATGAAAGCAATAATTTA 2668113 29 100.0 38 ............................. GAAATCAATTGGTATGTGCGCGGTGATAAAAAGGAAAT 2668046 29 100.0 35 ............................. TGATATTGACAAAGTTCAAAGTCAAGTCCATCATG 2667982 29 100.0 35 ............................. ATCTGTTACCTTCTCCTTGCCCAAGTCATCGATGA 2667918 29 100.0 39 ............................. GCAGCGGTAAGATTTGTTTCAGTAGAGCCAATGTTGGGA 2667850 29 100.0 38 ............................. TCTTTAACCCTTGAAAATAGCGCATAATCAACAGCATA 2667783 29 100.0 39 ............................. CACATAAAAGTAATGTCAATGCCCCAGAAATTGTGAACA 2667715 29 100.0 38 ............................. GTAGCATTGTTTGAATATTTAATTAAAACCTACACAAA 2667648 29 100.0 37 ............................. TGTAAGAAACTCTAAGACTTCATCCTGTGAGGCGATG 2667582 29 100.0 35 ............................. ATCAAGGGTGGAATTAGGCAATCGAATACTGTAAA 2667518 29 100.0 37 ............................. TTATTAGCCCCATCGGTTGATACCCAGCTTGTGTTTC 2667452 29 100.0 36 ............................. TTATTAACTGGTAATTATGTTATGAAGCTTGTGATA 2667387 29 100.0 38 ............................. AAGGCATTAAAGAGTATATTGAACAGAAAATTGAACAA 2667320 29 100.0 37 ............................. TTCAACCACCATATACATTGCTAAAATTTCTTTTTCA 2667254 29 100.0 38 ............................. GAATTTCAGGCATTGGCTAATATGTTTGGCAAATCTTT 2667187 29 100.0 38 ............................. ATTAGTTCGGCCGAGATTAATATGTTTAATGTTGTTGA 2667120 29 100.0 39 ............................. AACCTATTGCGATTAATCGAAACTACACGCGCATCATAT 2667052 29 100.0 37 ............................. CTCTAAACAATACTCGTCTGCATTTGTTATTGAGTTT 2666986 29 100.0 37 ............................. AATTAATAAAATTGAATATATTGATAGTATTAAAAAA 2666920 29 100.0 38 ............................. ATTTTGAGTGGAACGAAAAAATAGATAATTATATTCAA 2666853 29 100.0 37 ............................. CTTGCAGATTATATGAACTTAAGAGGGCTAAAAGATG 2666787 29 100.0 37 ............................. GTCTCTTATTCGCCACCCTTTTTCTTTTATTTTAAGT 2666721 29 100.0 37 ............................. CTCGTTGACGTCTTTATAATCAATAGGTATTTCAAGA 2666655 29 100.0 37 ............................. TGTTGAAATTGTCTAATTAATGTATAAAAACTACCTG 2666589 29 100.0 37 ............................. GATGTTTTTTTACTTTTTCAACATCCGCCTCTGGAAT 2666523 29 100.0 38 ............................. CTATCATTGAGGGTATAAATTTCTGCGTTATATAGTTT 2666456 29 100.0 36 ............................. CATCTAATCAAAAGATTTACAAAATTATGAGGTGAA 2666391 29 100.0 38 ............................. TGTTTATCTACTAATTTAAACATTGCAAGCGAGGAAAT 2666324 29 100.0 36 ............................. GACATAAAAATGATACCCTATTCCAGCCCAGCCTTG 2666259 29 100.0 38 ............................. TTTTTCTTCAGCTGTCGTTTATAAAAGGCGCTGTCATA 2666192 29 100.0 36 ............................. GCCAGACAAATCAAGTGTTTTAAGAATTTAAAATTT 2666127 29 100.0 37 ............................. CCTTTTTTGTTACAATCAAGGGTTTTTCAATCTCTTG 2666061 29 100.0 37 ............................. TCTGTCTACATACTTCCCTGCAGCGTCTGAAGTGTCG 2665995 29 100.0 37 ............................. ATGCACTGCTCCTCAACGCAACACCTCGCCATTGCCA 2665929 29 100.0 36 ............................. TTCAATAGGCCCTTCTTCGTTTATGCGTTCCTGAAG 2665864 29 100.0 37 ............................. CATGGACAACCAGCACCAATGTAACAAAGCAGCAATG 2665798 29 100.0 37 ............................. ATATTGTTGTACGAAATCGACCGAGGATAGAGCAATG 2665732 29 100.0 37 ............................. TATCGGAAATATGGACAAGGTTATCAGTAGCTATAAA 2665666 29 100.0 37 ............................. GAAATAATGCGAGAGCTTTTAATATAGCTGGTACTGT 2665600 29 100.0 37 ............................. CTTATTAGATTGCCTTGTTTATCAAGGGATATATCAA 2665534 29 100.0 37 ............................. TTTGAAGCTCTTTCTTGAGCAGGGGCTTGGCGAGATA 2665468 29 100.0 41 ............................. GCATGTCAATGTTAAATTCACTTTTTTCCTCATGCTGAACA 2665398 29 100.0 36 ............................. CATATGTTTTAGATGGCTCTTTTACACTGCTGCGTT 2665333 29 100.0 36 ............................. ACGGTTGCATACGTGAGAGTCGTCTCACTTACAACC 2665268 29 100.0 37 ............................. AACTACGTGAACATTTTCGTTGATGCATTTTGGGAAG 2665202 29 100.0 36 ............................. TTTATTTCTCTCTTCATCTTTTCACCTCGCCTTGTT 2665137 29 100.0 35 ............................. GATACCGCTTCATCAATATATTCTTTTACAACGAT 2665073 29 100.0 37 ............................. AGCTGAGATAATTTTTTTAGTAACACTGAAAGTCTTT 2665007 29 100.0 38 ............................. GCTGGGGCATTCTCAAATCTCAATTACGATGGATTTAT 2664940 29 100.0 38 ............................. ATGTTATAAGTCCTTGTATCAAAGAGTCTTCTATATCG 2664873 29 100.0 37 ............................. CAGCACCATTTTGGCTATGATTTATAAAAACAATAGA 2664807 29 100.0 37 ............................. GTCAAAAGAACAACCCTTCCACTTACCACTTCGTCCT 2664741 29 100.0 36 ............................. TGAATACAGTATTTTTTTGTCTTCTATGAACTTTTG 2664676 29 100.0 36 ............................. CTCAGGATCAAGATACTTAGGGAAACAAGTATGTGA 2664611 29 96.6 36 ..........................T.. ATTTTTTGATTACATTCATTTTTCAATTATAGTGTC 2664546 29 100.0 36 ............................. TGTCTTACGTAATTCACTTAAATATTCTTCAATCTT 2664481 29 100.0 38 ............................. AAAGCTTGTTCTTGCAGACTCTCAAAATATCGCTGTCG 2664414 29 100.0 38 ............................. CTTAAAATCAATGTCGAACAAAAACTGACTCTGACAGA 2664347 29 100.0 42 ............................. TGGCCAAGACATTTACTTTGACATGCAAATAACTAACGAAGA 2664276 29 100.0 38 ............................. TCAAAAAGTCTACTTGTTTTTGCAATGTTTCGATTTGC 2664209 29 100.0 38 ............................. CTGCTAAAGCTGCTGTATCTTCATCTGCTTCTTTTGAT 2664142 29 100.0 36 ............................. TGGTGGAAGATTATGAGAGAGCTACATATAGAGAAG 2664077 29 100.0 36 ............................. TGAAGGCAGAATCACAATTGAGGAGGCTAGGAAATT 2664012 29 100.0 35 ............................. GATGATATTTCAACACAGACAGCACCTGAAGATAC 2663948 29 100.0 36 ............................. ATGCTTTTAAGTCCTTCTTGTTAAGTACCAAAACTG 2663883 29 100.0 36 ............................. AAATAATTGTTCGTCATAATAATTCAAACCTAATAA 2663818 29 100.0 37 ............................. CATCAAGCGAACAATACAAATCTGGATGATAAGGATT 2663752 29 100.0 36 ............................. TGTGAATGCGTCAAAAATTGTTGTTTTTCCTGTTGC 2663687 29 100.0 36 ............................. TGCTATGCCCTGAATAGCTACGCCTTTGCTGAACTA 2663622 29 100.0 38 ............................. AATGATATACTTCATTTGCATACCTACCGCAAACTTCG 2663555 29 100.0 37 ............................. TCGTTACCTGTAAACTTTACCTGCCCTGTTGCTTTAG 2663489 29 82.8 0 ...................T.T.A...TA | A [2663463] ========== ====== ====== ====== ============================= ========================================== ================== 177 29 99.9 37 GTTTTATCTGAACTATGAGGGATGTAAAC # Left flank : TCTTTGTAATAGTTACATACGACATCAATGAAAAGAGAGTCAACAAGGTAAGAAAAATTTTGAAAAAATACTTCACATGGGTTCAAAACTCAGTTTTTGAAGGAGAAATTACATACGGCAAGCTTGAAAAATGCAAACGGGAACTTTTATCGGTCATAGAAAAGGATGAAGATTCGGTGTATTTTTATGAGATGGATTATAAACTTGTATGCAACAAAAAGGTTTTAGGACAAGAAAAAAACTATGATTCTGTTATAATTTGAAGGTTTTAAAATAAAACAAGGGTTGAATGTGCATTTCCAAACTAAACCATTTTGCAGCGAGGCCTAATATGATTTTAATCTTTCTGCCTTCTTTTCTTACAAGACCTTCAATACTCTTTACCAACTCCTTACAGAATCCAACCGCCCCCTCGCTGCAATCTATTTTTGTTGTTAAAAATTTGTTAATAGGTTATAATTTAAATGTAGCCTAGAAAAGAGGATATTTATTATTAATGG # Right flank : AAATAAAAATGTACTGAAAGTGGAGTATAAGAATGTACAAAATTGAACATTGATATGATATCCTTTCTCATAGTGAGGAGGGATATCAAATGCAGAACTTAACAGCACATTTAAACATGATAAGGGCGATGAAAATGAAACCTAACTTTTCAGACCTTGCAAGAATATATGGGATGGATATAAGAACAGTTAAAAAATATTATGAGGGTTATGAAGGAAAACCTAAGAATAGAAATAAACCAAGTAAATGGGACAAATACTATGATGAGATAAAATCAAAGCTTGCTATCAAAGGAGTTACAGTCAAGGGTGTTTATGAGTATTTTAAATCAAAAGATGAGACAATAGGAACATACTCAAACTTCAATAAGTATGTCAAGAAAAAATTAAATCACAAAAAAAGCAAATAAAAGATTACTTATGTTTTAAACAAAAGTTATATATTTATGATACCTCAAAATTTATCAATGAATAAAACTATAGGGTGAGGAAGTTGTAGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTGAACTATGAGGGATGTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 2725100-2725761 **** Predicted by CRISPRDetect 2.4 *** >NC_014720.1 Caldicellulosiruptor kronotskyensis 2002, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 2725100 30 100.0 37 .............................. ACATTCACGCAGCTTGGGTGAATGTGTATCCTACAAG 2725167 30 100.0 36 .............................. TGTCTCTCACTTCTCAAAACATTTTCTAAATTCTTG 2725233 30 100.0 34 .............................. TCGCAAGGCACACTGAACAACCTTATCGTATCGA 2725297 30 100.0 37 .............................. CCGCCTTTCTCAAGCAGTTCTGCACATTCTTTTTTCA 2725364 30 100.0 37 .............................. TTCTGTCATAGTACCCAACAAGGTACCGTCCCGGTAG 2725431 30 100.0 35 .............................. GATTTGGGAGCTGAGAACGAAACAGGCTGGGCAAA 2725496 30 100.0 37 .............................. ATAAAATCAAGAAAAATGCAGTGCAGCATGGTTGCAG 2725563 30 100.0 36 .............................. AAGTGATACTTGAGGTGACAAAGTATAATATGAAGA 2725629 30 96.7 37 .............................T CACATATCCATGGTTCATATCCTCTAAATTTTCAACA 2725696 30 86.7 6 ...........T...............GGA GGAGGG Deletion [2725732] 2725732 30 80.0 0 .GG......A.T..A..............G | ========== ====== ====== ====== ============================== ===================================== ================== 11 30 96.7 33 GTTTGTAGCCTCCCCTTTGGGGATTGAAAC # Left flank : TTAATAAATATTGAGATATTAATTGAGCAAAATAAGGCAAAACTCTGCCACACAAAGCTATACTTTACTACATAAAGAGGCTATTAACCTTTCTTTTTAGATAGCCTCTTTTTTTTTTCTTCATCTTTGTTCAGTCTATTATTCTGAACATTTTATATGCGCTGATATACTATTTGTACACATTTTCTGACATTTAAAACTATATCCAAAAATCAATTATAAATCAAATTTTATTTGTAATCATTTATTTACCATTCTTGTTATAACATTTATTTCCTATTAAAGTCATGTACTTAGTATATTCTATTAATTAAAACTTTTGTATTTACCAATTGCTGTCGACCTGAAATCCCCCCAAAAACCCCCGGGGGTCGACAGCAAAAGGTAATTTCTGGTATGTGTTGACTTTCATGCTTTTGAGGTGTATAATAGAAACAACATACTGCAGCTTGAAAACTTAACCATTTGTTCCTTGTGGCATTTTTCAACCTATCCACGGG # Right flank : GGAGGGGGAAGTTTCCCATTTTATAAAAATCAATTTATGCACTTAACTGAATTTTACATTTTATCTAATTCTATTTAATCTGTTACAAAAACAAAATTACAACCAAATAAAAACTTTCGTAATATTGTTAAAAATAATATTATTTTATTGAAGGGGTTGGTAAGGATGAGCGATATAAAAAATATTCAAGAGGATATTAAACATGAGGTTGCTATTGATATAGTCATGGGAGTTATCGGTGAGCTAACCAATATAAAAATTAAAATTGAAGATTTGTCTTTTGACAACGAAACAAAAGAACGAAAGATTCAAAAAATAGAAAAAATCTTAGAAATACTTTGGAAAGAAAGAGATCTCATCTATCGTGGTGATAAGGATGCGATTGAAAGGGCACTAACTGCTTATGCTCTCCTCTATTGGTTAATTGATGAAGAAAAAATTATAAACTCTAAAACCTTTTAAATCAAGAAGGGGAAAACACAAATGATTAATGAAAATCT # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:0.84, 5:0, 6:0.25, 7:-0.23, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCCTCCCCTTTGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA // Array 3 2735113-2736659 **** Predicted by CRISPRDetect 2.4 *** >NC_014720.1 Caldicellulosiruptor kronotskyensis 2002, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 2735113 30 100.0 38 .............................. TTTTTAGTAGTCCAGAAGAAGAAAAATTACTTAATACC 2735181 30 100.0 36 .............................. TCCACACATTCACTCTAATATCACCGTACTTACCAA 2735247 30 100.0 36 .............................. TAATATTAATTAATGCTATCACAAGCCTTATCACCA 2735313 30 100.0 37 .............................. ACCATCCATCACTTATCCCTTAACATTAAACAACCAG 2735380 30 100.0 37 .............................. TGTCGAAACGCATTAAATGCCTGCCCCGCTATTGTAA 2735447 30 100.0 37 .............................. AAGTCTGCGGTCTCTCAATCATTCAGCTCTCCTCCTT 2735514 30 100.0 37 .............................. ACTTGATAGGTGGATATGTAGATAGTGACGGGGACGG 2735581 30 100.0 36 .............................. TCCAGTCAAGTAATTCCCAACCCTCGAATGTAAACT 2735647 30 100.0 36 .............................. TAATATTAATTAATGCTATCACAAGCCTTATCACCA 2735713 30 100.0 35 .............................. CTTTCAAAATATTCCTTTCAAACCCATTGTATCTA 2735778 30 100.0 36 .............................. ATTTCTTCGGGGTCTTCAACACAAAATCTACAAGGA 2735844 30 100.0 35 .............................. CGTTGATATTAGGAATTGCAATACTATTTGGTTCT 2735909 30 100.0 36 .............................. ATAATTGCTCTTGTAAGAGACAGACTTGAACGTGAA 2735975 30 100.0 35 .............................. TATATTTTTGTTCTATTGTTCTAAAATAACCTCGA 2736040 30 100.0 37 .............................. CAGCGACGACATTGGGCATCCGCAGGGCGAAATACCG 2736107 30 100.0 36 .............................. TTATACCTAAAAGTATAATAAAGCAAAATATAAAAC 2736173 30 100.0 34 .............................. TAATGTGAAGCTTCTCTCTTGAGTGAGCCAATCA 2736237 30 100.0 36 .............................. GTCTAATCATCATTCAGCACCTCCTAACAAACGACG 2736303 30 100.0 34 .............................. TAATGTGAAGCTTCTCTCTTGAGTGAGCCAATCA 2736367 30 100.0 36 .............................. TTTTTTTGTGGTGTATGAAAAACCATTTGATTATCA 2736433 30 96.7 35 ....................A......... TCAACAGGCTGAACCACAGTTTGGTTATGTTGATA 2736498 30 100.0 36 .............................. TGATTTCCATTGTTAAATTATGCTATTACCATTTGT 2736564 30 100.0 35 .............................. TAAAAGTAAGCCCTTGGGCATTTTTCAAACAGTGC 2736629 30 83.3 0 ........T..TT............A...G | T [2736656] ========== ====== ====== ====== ============================== ====================================== ================== 24 30 99.2 36 GTTTGTAGCCTCCCCTTTGGGGATTGAAAC # Left flank : TAAATAGGCATCATTTCCAGATGCATCACCAATTAAAATATCACCAACCTCAACTATTTCCTCTATCAATAGCCTCTCACCTCACTTTTATGTTAATTATACCAATTTTATTTTCAAGATACAACCAAATTTTGAACTTGCAATTCTCGTTAGTTAGTTCACTTTTTAATTTTACATACCGTTATTTAATTTTTAAGGCCAAATTTTATGCGAAGTTAATTAACTTTATATGTTATTTTTTTCATTTTATATTATTTTTGCTTGTACAAAAATTGACATTTTTAATTATGTACTTTGTGATTTGTGACGTATTATGACTTTTGTATTTACCAATTGCTGTCGACCTGAAATCCCCCCAAAAACCCCCGGGGGTCGACAGCAAAAGGTAATTTCTGGTATGTGTTGACTTTCATGCTTTTGAGGTGTATAATAGAAATAACATACTGCAGCTTGAAAACTTAACCATTTGTTCCTTGTGGCATTCTTCAACCTATCCACGG # Right flank : GAAGTCTAAGTTTTGGAGGTAGAGGAGAAAAGGAGACTTTCTGTTGGAGATTGATACTGCTACCAATGGTGTAGTAAATGGTAGTGCAGGTGCATGGTCTGTATGCTTTTTGTTTTGGAAATTAAGGGAATTAGAAGAGTATTTGCTTAAAAATTGGATAAAAAAGAAGCGCCTTCTTTTAGAAATTTGTTAAGTAAAGTTTATAACCAATTTTTTTATAAAAAAAAGGGCTTTTCATAGCCCTTTTAATCCTTGCCCGTGAACAAGTATAATCTTTTCAGGATTTAAAATTTTTAATGTGTGTAAAATTTCAAAGTAGTTAGAATGAGCAGAAAGAGGAATATCAAAATAGTGAACCTCAAAATTCTTTATTACCTTTATCATCTCATGAATATACTGCTGTTCTTCTATATATCCGCTTTTGATAAACCCAAATGCACTGCCGTTCAAAAGTTGAACATACTTTACTGCAATGCTGTTTGGCTGAAGCATACCAGAGC # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCCTCCCCTTTGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 4 2745478-2746034 **** Predicted by CRISPRDetect 2.4 *** >NC_014720.1 Caldicellulosiruptor kronotskyensis 2002, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 2745478 30 100.0 34 .............................. GATAATGGATGTCGTGTATATGTTGCCCGGCCTC 2745542 30 100.0 36 .............................. TAATACCTTCCAGTCGTCCATTAATTCTCTTCATCT 2745608 30 100.0 37 .............................. TTATAGCCATCTTAAATCAACCTCCTCAATTTCGTGA 2745675 30 100.0 37 .............................. AACACATCGTAATTACTTAGCAGCCCTTTTTTCCACG 2745742 30 100.0 36 .............................. AAGAGAAAGAGGAAAAGAAGCAAAAAAGAGTAAAGA 2745808 30 100.0 36 .............................. CTGGACTTGTTACATGCAGTTGAGACAGCAGTGAGG 2745874 30 100.0 36 .............................. CTGGACTTGTTACATGCAGTTGAGACAGCAGTGAGG 2745940 30 100.0 35 .............................. ACAGGGAAAGAAGTGTATGTAAGTACGAAAGATAT 2746005 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 9 30 100.0 36 GTTTGTAGCCTCCCCTTTGGGGATTGAAAC # Left flank : TAGATCAATACAAAAGTTCTACTACTCCTACTGTCATGGACATTTGCACGTGTCAACCACTATACTATTGGTATAACCCCATCTCCAACTGTTGCTATTACATGTAATTTATATCCATCGTAAAAACCTAAACTAATACATACTCCTATTCCTGCTTCTTTGTCATCTCTCGAGCTTCTCAAATGAGCATAAAAAATTAGAATTTTTATTACATTAGCTAAATGTTATTGCTTGCATTTCAGTTTATATTTTCTTTTTTTGTTAAGGTGTTATTTTCCATTTTATATTTTGTATTAACTATTTTCTTTACTACGCTGATTTTGTAGTTTCCAATTGCTGTCGACCTGAAATCCCCCCAAAAACCCCCGGGGGTCGACAGCAAAAGGTAATTTCTGGTATGTGTTGACTTTCATGCTTTTGAGGTGTATAATAGAAATAACATACTACAGCTTGAAAACTTAACCATTTGTTCCTTGTGACATTCTTCAACCTATCCACGG # Right flank : CTATATTCAATATTGTCATTTGGAGCTGTAGCATTTTATGTAGAGATAGCAAAAGGTGGTAAACCACCTTTTAGTACATTTTTTGTAGGATTTAGTGACAAGTTGATATATAAGGTGGTGTTGCTATATTTATTAACTCAACTGATAATTCCTATAGGTCTGATAACATTTATTATACCAGCATTCCTGTAATGAACGAAAATGAGTGAAAATGACGAGAAATGAGATTTGAAAAGATAAGGTACCTCCTGATAAAATTAATAAAGTAAGTTGTACAACTTACGAAAAAACAAAACAAAGGAGGTACCCTCTTTGAAGTATACACAAAATGAGAAGATATTACAAGTGACAGAGAAAACTTTAGTTGTAGGAGTAGACATAGCAAAGGAAAGGCATGTTGGAAGAGCATTTGATTTTAGAGGAGTGGAGCTTGGCAAGAGAATAGAGTTTGAGAACAGGAAAGAAGGTATGGAGAAATTTTTGGATTGGGCAAATAAGAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCCTCCCCTTTGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : NA // Array 5 2769632-2770876 **** Predicted by CRISPRDetect 2.4 *** >NC_014720.1 Caldicellulosiruptor kronotskyensis 2002, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 2769632 30 100.0 35 .............................. TCATTTAAAGCGGTCTTGTCTACAATTACATATGG 2769697 30 100.0 36 .............................. AAGTTAGAAACAATTCTTTTTTTGCTGTTCTATTCT 2769763 30 100.0 34 .............................. ACACAAGCATACCGTCTGAATTGTAGCTAACCTG 2769827 30 100.0 34 .............................. CAGTAGATGAAAAAATATTAATTAGGTATTCAGA 2769891 30 100.0 35 .............................. TCTTTCACCCTCCAATGCAGCTTTCAAGTCTTCAA 2769956 30 100.0 36 .............................. AGATAATAATTGAGAAGTATAAAGACGTATTTGAAT 2770022 30 100.0 35 .............................. TTGAGGATTCGAATTTTACTGAGTTTTTTCTTGCC 2770087 30 100.0 36 .............................. TCATTTTCATCTTTTCACCATACCATTTTGTTACCC 2770153 30 100.0 35 .............................. ACATACAATCATCTAATAGATTTGTATTACAAACA 2770218 30 100.0 35 .............................. ACATACAATCATCTAATAGATTTGTATTACAAACA 2770283 30 100.0 36 .............................. CAAATTTTGCAGGAACATAAAGGTCTTTTGTAATCA 2770349 30 100.0 35 .............................. CCATACAATCCACGCTCAATACTAATTTCAACAAG 2770414 30 100.0 37 .............................. ATATATCTGTATTTAAAACATTCCTTACCGCCTTACC 2770481 30 100.0 36 .............................. ATAGAAACATGTAAAATGGAGCTCCGCTGTATGCGT 2770547 30 100.0 34 .............................. TCATAATCCAGCCCTAAAATCTCACAAACTTTAA 2770611 30 100.0 35 .............................. TGGAATATATGTGTCCACAGTATCTTTAACAGTTG 2770676 30 100.0 37 .............................. CTCTTGTTGGATATACTCGTTTTTATCTATGGCATCA 2770743 30 100.0 36 .............................. TAATTGATTTCGATCCGCCTTCACTCTCAGGCATAG 2770809 30 90.0 8 ...........................GGA GGAAGGGG Deletion [2770847] 2770847 30 76.7 0 .G.........T...G.....A.....CCA | ========== ====== ====== ====== ============================== ===================================== ================== 20 30 98.3 34 GTTTGTAGCCTCCCCTTTGGGGATTGAAAC # Left flank : TTTTTATAGAATCTTTCCAGTATCCATACATCTGAGAGAGCTTGGACATGGGCAATCATACCTTTCAATTTTGATTTATCTTTTTAATAGTTTATACCCTCATTGAGTGTGATATTTATTTACATAAAACACTTTTATATAATATCATTCGACACATATTGACATAATCTTCTATTTTAATGCAATTTTCAGAAAAATTGATTTTTTATTAGTTTTATCTTTGATTTTTAGATAATAATTGGTATTATTTTGCATTATTGTTATTGCATTTTATTCCTTTTGGGCTTCTGTATTTAGTTTTTTGAAATAAATTTTGACTTTTGTATTTACCAATTGCTGTCGACCTGAAATCCCCCCAAAAACCCCCGGGGGTCGACAGCAAAAGGTAATTTCTGGTATGTGTTGACTTTCATGCTTTTGAGGTGTATAATAGAAATAACATACTGCAGCTTGAAAACTTAACCATTTGTTCCTTGTGGCATTTTTCAACCTATCCACGG # Right flank : AAGAAAGGGTGTTTAGTAATTTCCTTTAGTGATTGAAATTTGGTGTTGCTGCATTGAATAGCAAAATAAAATATACTCCAATGGTGAAATAAAGCGATTGGCCAAGAAGTTAATCAAGAAAAGCAACTCTGACAGTTCTAAGAAAATCATTAGTGCCAATAAATAAAGGTGGAAATTAACTCCTAACAATCCAAATACGTTGTTTGAGAATTGAATCTGAATTCTTTGAATAAAAAAAAATTACTTCATCAGAAGTATATTTAGACCTCTATGATAGCTTAGAAAATGGATACTATAAATTTTTTGGTGTATCTTTATCGTCGAAAGGAACTATACAATGAAAAAAGAAAAACAACCTTTGATACACATCTATTGTGATGAAAGTTCACAAAATAAAAATAGATACATGATTATTGGTGGACTATGGGTTTTGTATGAGAATTTAGAAGAAATAGAAGAAAGTTTTGAGCAGTATAGAATACAACATAATATGTATAGTG # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCCTCCCCTTTGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 6 2772516-2772677 **** Predicted by CRISPRDetect 2.4 *** >NC_014720.1 Caldicellulosiruptor kronotskyensis 2002, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 2772516 30 100.0 36 .............................. ACACCTCACTCTATGTATCTTGCAAGTCTAAGCACC 2772582 30 100.0 36 .............................. AAAGAGTTAGAGAACAAAGTAAGAAGCGAAATCATA 2772648 30 90.0 0 ..............A...A...G....... | ========== ====== ====== ====== ============================== ==================================== ================== 3 30 96.7 36 GTTTGTAGCCTCCCCTTTGGGGATTGAAAC # Left flank : GTGAGGGTTTCGGATATCAGTGGCGCTATTTCCTGAATGCAGGTTAAAACCTGCTTATTATTTACTTTTTCACTTTTCAATTTAATTATACCTCATAACAGTGATTTAGTCAAAAAAATTTTTTATTTTGTGTTATATAATTCTACAGCGTTGCTTATAATTGCAAATAACATTATAGTATTTATTTAATTGCAGATAAACTTGAAGGCAAACTCAAAAAGGCAAAATTGAAACCACAATTGAGCTTGCAAAAAGATTAATGCAAATGCAAATTATCCCTTTTTGGCTTTTGTATCTGGTTTTCTAAAATAAATTATGAATTTTGTATTTTCCAATTGCTGTCGAACTGCAGTACCCCCAAAACCACGGGGGTTGACAGCAAAAGGTAATTTCTGGTATGTGTTGACTTTCATGCTTTTGAGGTGTATAATAGAAATAACATACTGCAGCTTGAAAACTTAACCATTTGTCCCTTGTCGCATTTTTCAACCTATCCACGG # Right flank : CGCAGGTATTTTACCTTTCATCTTGGATAAGAAAATATGTTTGATATTATCTTTTAACTTTGTTATAATGTTTCTTAAAAAACCCTTCAGGTGAAAATAATGAATAACCAGCTTCCTTACAACATAAATGATCTGGAGTAAAAATACATATTCTATAACAAAAGTATCTTTATTAAGTTTTTAAAGAGATTTGATAAAATTGTGGTATTTAAAAATCTTACAGAAGACCGGCTTGAAAGAATTGACAAAAGTTATGTTTTGCCAGACTTCTCTGAACTGCAAAGTGACATCCTTTATAAAGTAAGTTTAAAAGAGAAAGAGATTATCTTTTACATTAATTGCGTAATTGATCTTGAGTACACATTGGATTGACTTAAACCAAGTAGAAAGCATTTTGCAAGTGAAAGACATACTGAGCTTAATATTGAAGCTCAACAGGATTAGTGGATATAGTCTTCTTTTTTTCAACAAACTCATCTTAATCCTTCTCAAAAGTTATG # Questionable array : NO Score: 8.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.84, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAGCCTCCCCTTTGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.61%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 7 2788771-2789325 **** Predicted by CRISPRDetect 2.4 *** >NC_014720.1 Caldicellulosiruptor kronotskyensis 2002, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 2788771 30 100.0 35 .............................. GACGCGCACAATTTTCGCAAATGCACTCGTACTCG 2788836 30 100.0 36 .............................. TTTCATGAGAGCAAGAGTAGCAAAGTCGTCTTGCAA 2788902 30 100.0 35 .............................. CAGGCGTCGGCGATGTAAAAGTATTTCCGTTATGG 2788967 30 100.0 36 .............................. TCTGTCCTATAGACTCTGAGCCAATGCTCAGAGTCC 2789033 30 100.0 37 .............................. GCAGAAGCTGAATATCAAGCAATAAGTGCTGGTGTAG 2789100 30 96.7 35 .....C........................ CACGTGTTATTATGAAGGTGCGTTTGGTGATGAGC 2789165 30 100.0 36 .............................. AAGTCTTTTTTTGTTCATCCTTCCATTTCAGATAAG 2789231 30 86.7 35 ...T.......C...G......G....... GCATATAACACCAGTCTGCCGTTGAGTTTGATATA 2789296 30 76.7 0 ...T..........T.A...A......GGT | ========== ====== ====== ====== ============================== ===================================== ================== 9 30 95.6 36 GTTCGTAGCCTTCCCTTTGGGGATTGAAAC # Left flank : CTATTTTTAGATCTGGCAATTTTTTAGTTTCTGTTGTAAGTTTAATCATTTCAAAATTTATTTTATAACTTTTTTTGGCAGTTGAAAAGTTCAAAAAATATGCGAACTTTTAATAATGATAGCAATTATTTAGTCAGTATGTAACCTGTATAGTCATTATTCATTATATTAGCGTTCTAAAATAAAAAGATATGTGTCAAAAATTATAACAAAGCAAAATAATACTTTTACTATCATTTTGCCCTGGTATTTACTTTTATGTTTGTTTATTTTGTTATAAATGGCTCCATGTATCTTGAAAAATAAGACTTAAATTAGCTTTTGTATTTACCAATTGCTGTCGACCTGCAATCCCCCTAAAAACCCCCGGGGATCGACAGCAAAAGGTAATTTCTGGTATGTGTTGACTTTCAAGAGTTTGTGGAGTATAATAGAAATAACATACTGCAGCTTGAAAACTTAACCATTTGTTCCTTGTGGCATTTTTCAAGCCTTCTACG # Right flank : TAGAACATTGCCTTTGGGATTTGAGAGGAAGAAAATGAAGACTCTTCTTAAATAGTTGAAATGGATTGTATGTTAAAATTTTTTAACTTCTGGGAGAATAAAAAGATGCCAGGGATAAAGAAACAACTCCCCGGCATCTTTTATATCCAGTTTTAAATTGAAATCATTCCTCTATTATATCCTCTCCTTCATCTTCTAATCCTTCTGGATACATATCCTCAGGATCTGCATAGTGGCATATGTTAAATGTTGTAACATCAACTGATGATACTGGTGAGCTAATCGGAAAAAGTGCCATTGTAAGAGAAATGTTCCCTTTTTCCAAATCTTCTATTAACATTTCAAGCCCTATCTTGTCTTTATCAAGAATAATTGTTTTAACTGGGGGAATTTTAAATTGTGATATTGAATCACCAGAATCTAAACCAGCTTCATTATCAATTCCAGCTTGCTCAATAGCTTCTTCATAAGGATCATAATCTCTTATCTTTTCCTTTATT # Questionable array : NO Score: 9.04 # Score Detail : 1:0, 2:3, 3:3, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGTAGCCTTCCCTTTGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.60,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : NA // Array 8 2791967-2792598 **** Predicted by CRISPRDetect 2.4 *** >NC_014720.1 Caldicellulosiruptor kronotskyensis 2002, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 2791967 30 100.0 35 .............................. CATACAAGATCAACACTCTCACCCACCTTATAACC 2792032 30 100.0 36 .............................. TAATATTAACTGTAATCAACATTTACTGCATGTAAG 2792098 30 100.0 36 .............................. AAAAGTCTCAACAAAGTATCGTCTTTATTAATGTTT 2792164 30 100.0 36 .............................. GGGTTTTCAATATATAGTTGCTTTAAATGGTTGTAG 2792230 30 100.0 36 .............................. AAAAGTCTCAACAAAGTATCGTCTTTATTAATGTTT 2792296 30 100.0 36 .............................. GGGCTACCATGATTTTCCCTGTCCATATCGACCTTG 2792362 30 100.0 37 .............................. TCTGTTCCTTTCTCACTCTGCATTATGACAGGTTCGT 2792429 30 90.0 7 ...........................GGA GGAGGGG Deletion [2792466] 2792466 27 76.7 11 ...T.......C...G....A......--- GGAAGAGGGGG Deletion [2792493] 2792504 30 86.7 35 ...T.......C.T......A......... GCATATAACACCAGTCTGCCGTTGAGTTTGATATA 2792569 30 86.7 0 ...T............A...A........T | ========== ====== ====== ====== ============================== ===================================== ================== 11 30 94.6 31 GTTCGTAGCCTTCCCTTTGGGGATTGAAAC # Left flank : AACTCTAAAGTTAATAATTTTGAAGTTTATAAATATTATAACACAGTTTCAGTTAGATTTCTATTGTGTTTTTGATTTTTCTGAAGTTCACGCCATTTTATGCTAATTTAATTCTTCTTTGTAGCTTGCATTAATTATTCTTCAGTTATATATATTCTCTTTTTTATCCTTATCCAAATCTATCGGACGCATGCGATTCAAATTAAAAAAAGGAGCGAAATGATATATTATTTGTATCTATTCCTGTATATTGTATTTTTGTTTATACATTTTATTCCATATTGTTGTATGTATTTTGAAATATAAGGCATAATTAGCTTTTGTACTTACCAATTGCCGTCGACCTGCAATCCCCCTAAAAACCCCCGGGGATCGACAGCAAAAGGTAATTTCTGGTATGTGTTGACTTTCAAAAGTTTGTGGAGTATAATAGAAATAACATACTGCAGCTTGAAAACTTAACCATTTGTTCCTTGTGGCATTTTTCAAGCCTTCTACGG # Right flank : TAGAACATTGCCTTTGGGATTTGAGAGGAAGAAAATGAAGACTCTTCTTAAATAGTTGAAATGGATTGTATGTTAAAATTTTTTAACTTCTGGGAGAATAAAAAGATGCCAGGGATAAAGAAACAACTCCCCGGCATCTTTTATATCCAGTTTTAAATTGAAATCATTCCTCTATTATATCCTCTCCTTCATCTTCTAATCCTTCTGGATACATATCCTCAGGATCTGCATAGTGGCATATGTTAAATGTTGTAACATCAACTGATGATACTGGTGAGCTAATCGGAAAAAGTGCCATTGTAAGAGAAATGTTCCCTTTTTCCAAATCTTCTATTAACATTTCAAGTCCTATCTTGTCTTTATCAAGAATAATTGTTTTAACTGGGGGAATTTTAAATTGTGATATTGAATCACCAGAATCTAAACCAGCTTCATTATCAATTCCAGCTTGCTCAATAGCTTCTTCATAAGGATCATAATCTCTTATCTTTTCCTTTATT # Questionable array : NO Score: 8.57 # Score Detail : 1:0, 2:3, 3:3, 4:0.73, 5:0, 6:0.25, 7:-0.41, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGTAGCCTTCCCTTTGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.60,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : NA //