Array 1 28978-27503 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZES01000006.1 Salmonella enterica subsp. enterica serovar Hvittingfoss strain 99-0236 NODE_6_length_271482_cov_3.17327, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 28977 29 100.0 32 ............................. GCGCGGTTCTGCGCCCTGTTTCCAGTTCAGTA 28916 29 100.0 32 ............................. CGGTAACAGGCACGAATCAGGCGTGTCGGCGT 28855 29 100.0 32 ............................. CTGACGGTAAAACTACGGTACCGCCGTAGTAA 28794 29 100.0 32 ............................. GGGCGGCTGTCGTGGGTATTGAGAACACCGCT 28733 29 100.0 32 ............................. AATTATCTATTTTTCTGGCCCGTTTTCAATGC 28672 29 100.0 32 ............................. TCTGGTCATAACATCGCAGCAAAATCAAAAGA 28611 29 100.0 12 ............................. CATTAAAAAAAA Deletion [28571] 28570 29 62.1 32 CAT..G.TATA.GTG.............. TGGTTGTTAATGCTGGCGATATTTTTAGCACA 28509 29 100.0 32 ............................. CAAAAAATTACCCATTGCGAAATCATATTCCC 28448 29 100.0 33 ............................. TTGAGCACGACGAAATTTTGGTTTGATGCAGCC 28386 29 100.0 32 ............................. CTCGACAGTGTGTGTAAACCGGCGGGCGCTGG 28325 29 100.0 32 ............................. GTTATTCAGTTTATTAAATTTTTCCGCCAAGT 28264 29 100.0 32 ............................. GGGCTCATAAGTATTTCACTGACTGACTACGG 28203 29 100.0 32 ............................. CAACTGTATTTTGCGTTATTACGCTGAACCAG 28142 29 100.0 32 ............................. CGTCAGTTGCTGGAACTGGGGCACGATCTGGT 28081 29 100.0 32 ............................. GAGGTAAAACTAACTGGCCGCGTTGTCCGTCA 28020 29 100.0 32 ............................. TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 27959 29 100.0 32 ............................. GAGCGGCTAAACGATGAATTAACCAGGGAGCG 27898 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 27837 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 27776 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCCTCCTGC 27715 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 27654 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 27593 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 27532 29 96.6 0 ............T................ | A [27505] ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.3 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATACATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //