Array 1 779645-780015 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_LS483415.1 Streptococcus pyogenes strain NCTC8304 chromosome 1, complete sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
    779645	    36	  91.7	    30	A.....TT............................	CTTACGAGCTGAGTTTACTCGTAGTAATCA	AC [779650]
    779713	    36	 100.0	    30	....................................	CACTGATTGGACAAAGAATGCTCCAGTCCG	
    779779	    36	 100.0	    30	....................................	GATTAGCTCAAGCATGCCTTTATAAATGTT	
    779845	    36	  94.4	    30	..............T...G.................	CAGCTTGGATTTAATAGCAGACCATGTTTT	
    779911	    36	  94.4	    30	..............T.......G.............	GCACGAGTTTAACTCCCTTATTATTAGCTT	
    779977	    36	  97.2	     0	................................C...	|                             	T,TT [780006,780010]
==========	======	======	======	====================================	==============================	==================
         6	    36	  96.3	    30	GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC	                              	       

# Left flank :   AAGTCGTTTTTCTTGGCCTCCTTTACCCAACCCTTAAGACTTTCACACAAAGGTTAAAAACCAAACGTTTCTGGCTCCTTCAAAAACCTTTAATACTAGCAGCTTTGTTTCCTCTTATGATTGGTCTAATGGCTAGTTTCATTGGGTTTGAACATTTTTTTACTCTTTTTCATAAGGTGCTTTTTGTAGGAGATAGCAGCTGGCTCTTTGATCCCTTGAAAGATCCTGTGATTTGGATCCTTCCAGAAGTCTTTTTCTTGCACTGTTTCCTTTTCTTTATGATAGTTTACGAAATTATCCTGTGGAGCTTAGTAGGTTTAGCAAGATGGCAGCGCCTAAATGTAGAATGATAAAAGGATTAAGAGATTAATTTCCCTAAAAATGATAGAACAAGCGTTTTGAAAGCGCTTGTTTTTTAGTTTGCAGTCAGAGTAGAATAGAAGTATCAAAAAAAGCACCGACTCGGTGCCACTTTTTCAAGTTGATAACGGACTAGCCTT
# Right flank :  CATTGCCAATGATAACTTGAGAAAGAGGGTTAATACCAGCAGTCGGATACCTTTCTATTCTTTCTGTTAAAGCGTTTTCATGTTATAATAGGCAAAAGAAGAGTGGAGTGATGGAACAAACATTTTTTATGATTAAGCCAGATGGGGTTAAGCGAGGGGGTTAGTTGGAGAGATTTTGCGGTGGATTGAACGCCTAAGATTTACGTTTGAGCGATTCGAGCTAAGACAAGCTAGTTCGAAATACTTGGCTAAGCACGACGAGACCTTGGTGATAAACCTTTTGATCCTAAACTTAAAGCTTACATGACAAGTGGTCCTGTTTTAATTGGGATACTTCTTGGGGACTAAGGTGGTTTTGTCTTTTTGAACCATGATGAGAGTAACCAATCCTACGGATGCTCTTTGCGGAACCATTCGTGGGAATTTTGCTCAGGCTCCTGGTGATGATGGAGGTGTTTTTAACATGGTGCATGGGTCTCATTCAAGAGACTCTGCTAGGC

# Questionable array : NO	 Score: 5.76
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:61.11%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-2.00,-0.20] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [5-8] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [58.3-61.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.28,0   Confidence: HIGH] 

# Array family : II-A/B/C [Matched known repeat from this family],   
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