Array 1 53879-54141 **** Predicted by CRISPRDetect 2.4 *** >NZ_RQVH01000011.1 Veillonella sp. CNR 79/14 contig_0011, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== =========================================== ================== 53879 34 100.0 42 .................................. TCATGCACAAAATCTATTCCCATGTGTATCATTGCGTCTTTT 53955 34 100.0 42 .................................. AAATATAAACCTCCAATATAATGTCCAATGTTAACTTTTTGT 54031 34 100.0 43 .................................. TACTTGATGGGGTTGTTTTGTTAATCTCATTAAAAAATATCCA 54108 34 82.4 0 T.A.........A..A......T..T........ | ========== ====== ====== ====== ================================== =========================================== ================== 4 34 95.6 43 GATAAAAAATAATCCCCAGTACGGGGACGGAAAC # Left flank : GCTCACCAGGGTGCACCTGAATTTGACCAAAAGCAATACGAATCATGGGGAACTCCTTTATAGTATAGATTAAAAGTGTTGATACTTGTTGAGTATATTATAGCATTTTATAGGGGATTTGTAGTGGGGAGATAGTGAACATGGATATGTATTTTATTTTATTCGAAGATTCACCATAACATTAAATAATTTATATTTATAAGTGAAAATAAGAAATGAAACTTGACGGAGTATTAGGTTGGATTTATCATGTAACCAAGCTACCCCTCACATCCGTAAGGTTTGATATATTTTGGTGGTAGGATCCTTTGTTTTTGAAATTTGCAAGTTATCTATGATATATGGTATTCTTGTGCTATAAATAAATCTCCGCCGATGTGATAAGAAATGGCTTAAATGACAATTTTGTGTGTCATGTTAGAAGTTCAGGTTGTGTATATGAGGACTTCGCCGATATTAGTGGCTTAAAAGCCGTAGTTATCATAATAATAGAGGGTAGG # Right flank : ACATAAGAATTTT # Questionable array : NO Score: 2.64 # Score Detail : 1:0, 2:0, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATAAAAAATAATCCCCAGTACGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.88%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.20,-9.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA // Array 1 248-5 **** Predicted by CRISPRDetect 2.4 *** >NZ_RQVH01000034.1 Veillonella sp. CNR 79/14 contig_0034, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =================================== ================== 247 35 100.0 35 ................................... GTGCCAATTGGCAACGGCGAAAGTTATTGGGGCGG 177 35 100.0 34 ................................... TACATTATTTAATTTTCTTGATTAAATCGTAGCC 108 35 100.0 34 ................................... TAAAACAACAATAAGGATATAAAATTAAACTTAA 39 35 71.4 0 .A.A.T...A..A......A.A...T...A....A | ========== ====== ====== ====== =================================== =================================== ================== 4 35 92.8 35 CTTTAGAATTACTTCCCCATTGAGGGGACTGAAAC # Left flank : CTACGGTTTCAATAGACAACTTTTGTACGACCTCTTCTCCCACTTCTACGACAAAGTATCCCCCATCCTTACGTAGTCTAGCTGATGGTTCGGTTATGTATAGAGATGGCATATAGTTCCTCCTTTCCTAATCATGCATATGCCGTTCAGAAAATCTATTCCTTTTCTGAATTACAGTTCTATTATACACGATACTAGGAAAATAAAATGATAAATTAATCGGATTAACATAGTACATCTTACAATGCTTGAAAGATAGAAAAGAGTATGATATAGTACTAATTAATGAAAGGCTTAGCTAACTATTAAATAAACTAATTTAATTAGCAAGCTATTTTCCAAAAAAATTCTAAAGGAAATCAAAATCTGCACCGACCTAGTGGTCATGCGGTCTGAGACCAGTTTTTGAAAATCAGTGTTGGTTGTTGTTTTTCAAAAGTGCAATCAGCGCCGTAAGGTGGATTTTGAGGTGCATGGTTATAATGATTCAAAGGGGTACC # Right flank : ATAAA # Questionable array : NO Score: 2.50 # Score Detail : 1:0, 2:0, 3:0, 4:0.64, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAGAATTACTTCCCCATTGAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.00,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [6.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 1 336-25 **** Predicted by CRISPRDetect 2.4 *** >NZ_RQVH01000047.1 Veillonella sp. CNR 79/14 contig_0047, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ==================================== ================== 335 35 100.0 34 ................................... GTTTGGTTCAATCTGTCGAGATTGAAGACGACTT 266 35 100.0 32 ................................... GCAATCAAATATTTAGGTCTTGAAAATAAGAC 199 35 100.0 36 ................................... TGCACGCAAACTTGTTAATTTCAGTTCCTATTTTAA 128 35 100.0 34 ................................... TTAACCAGAATTTGAAAGAATAAGAAGCGAAGAC 59 35 74.3 0 .A.....A..AAA...G.....T......A....A | ========== ====== ====== ====== =================================== ==================================== ================== 5 35 94.9 34 GTTTCAGTCCCCTCAATGGGGAAGTAATTCTAAAG # Left flank : ATTATTTTCAATTCCATAAAACTGTTAGTAAATTTTTATTTTATTTTTCTTTAATTTACATTTTTTTGATGT # Right flank : AGAAAACCAAAAAAAAAAGAAAAAA # Questionable array : NO Score: 2.81 # Score Detail : 1:0, 2:0, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTCCCCTCAATGGGGAAGTAATTCTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.30,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-85.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA //