Array 1 433429-434554 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHMD01000007.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM N50449 N50449_contig_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 433429 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 433490 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 433551 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 433612 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 433673 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 433734 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 433795 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 433856 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 433917 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 433978 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 434039 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 434100 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 434161 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 434222 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 434283 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 434344 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 434405 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 434466 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 434527 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 450813-452348 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHMD01000007.1 Salmonella enterica subsp. enterica serovar Heidelberg strain CVM N50449 N50449_contig_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 450813 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 450874 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 450935 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 450996 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 451057 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 451118 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 451179 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 451240 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 451301 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 451362 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 451423 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 451484 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 451545 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 451606 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 451667 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 451728 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 451789 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 451850 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [451892] 451892 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 451953 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 452014 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 452075 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 452136 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 452197 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 452258 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 452319 29 96.6 0 A............................ | A [452345] ========== ====== ====== ====== ============================= ================================ ================== 26 29 98.1 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //