Array 1 528-10 **** Predicted by CRISPRDetect 2.4 *** >NZ_SEWP01000002.1 Salmonella enterica subsp. enterica serovar Heidelberg strain 555_12 NODE_2_length_433904_cov_29.5814_ID_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 527 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 466 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 405 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 344 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 283 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 222 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 161 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 100 29 100.0 33 ............................. CGTTCAGCGCGGTATTGGGGCCGGGGACCGCCC 38 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 9 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GAACAGGAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [8.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 16-713 **** Predicted by CRISPRDetect 2.4 *** >NZ_SEWP01000021.1 Salmonella enterica subsp. enterica serovar Heidelberg strain 555_12 NODE_21_length_82538_cov_28.2219_ID_41, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 16 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 77 29 100.0 31 ............................. ACAGGAACAGGAAAAAAAAAGATTTGTCGGT 137 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 198 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 259 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 320 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 381 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 442 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 503 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 564 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 625 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 686 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 12 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CAAGCGGCACCTCAAG # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [10.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 16972-18565 **** Predicted by CRISPRDetect 2.4 *** >NZ_SEWP01000021.1 Salmonella enterica subsp. enterica serovar Heidelberg strain 555_12 NODE_21_length_82538_cov_28.2219_ID_41, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 16972 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 17033 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 17094 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 17155 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 17216 29 100.0 31 ............................. TTAATCCATATACGGGCCTTGCGGGTTTGCC 17276 29 100.0 30 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTG 17335 29 93.1 32 ....GT....................... GCGCGCCAATAATTTTATTGACGATTTCATCA C [17339] 17397 28 96.6 32 ...-......................... CCGCTGACGCACTGGATCAACCTGACGCAACG 17457 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 17518 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 17579 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 17640 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 17701 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 17762 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 17823 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 17884 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 17945 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 18006 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 18109 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 18170 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 18231 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 18292 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 18353 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 18414 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 18475 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 18536 29 96.6 0 A............................ | A [18562] ========== ====== ====== ====== ============================= ========================================================================== ================== 26 29 99.1 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [4-3] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //