Array 1 49-1036 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACRXC010000012.1 Salmonella enterica strain 59 NODE_12_length_161690_cov_119.104589, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 49 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 110 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 171 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 232 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 293 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 355 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 458 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 519 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 580 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 641 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 702 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 763 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 824 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 885 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 946 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 1007 29 96.6 0 A............................ | A [1033] ========== ====== ====== ====== ============================= ========================================================================== ================== 16 29 99.6 35 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CAGCGGGGATAAACCGACGCCCCGAATGTGTTTGCCTCGCCCGCTGCCG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.18, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 219823-221315 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACRXC010000009.1 Salmonella enterica strain 59 NODE_9_length_238437_cov_118.913417, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 219823 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 219884 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 219945 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 220006 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 220067 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 220128 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 220189 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 220250 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 220311 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 220372 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 220433 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 220494 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 220555 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 220616 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 220677 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 220738 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 220800 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 220861 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 220922 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 220983 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 221044 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 221105 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 221166 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 221227 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 221288 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 237447-238391 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACRXC010000009.1 Salmonella enterica strain 59 NODE_9_length_238437_cov_118.913417, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 237447 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 237508 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 237569 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 237630 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 237691 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 237752 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 237813 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 237875 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 237936 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 237997 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 238058 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 238119 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 238180 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 238241 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 238302 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 238363 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 16 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCCGTGTTCCCCGCGCC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //