Array 1 1787785-1788875 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP031556.1 Streptococcus agalactiae strain Sag27 chromosome, complete genome		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
   1787785	    36	 100.0	    30	....................................	TAAATTCTTGCCATTCAGCTAGAGTTACTT	
   1787851	    36	 100.0	    30	....................................	CCGTTCAATCTGTTCTTGCTTTTGGTCATC	
   1787917	    36	 100.0	    30	....................................	AAGGGTGTTAGATGATAATACCTTTTTTAA	
   1787983	    36	 100.0	    30	....................................	ACACCGTTGCGGTTGTTGTCGGTCACTCAA	
   1788049	    36	 100.0	    30	....................................	TCTATTAACAATAGTTTTATCCAATTGTTT	
   1788115	    36	 100.0	    30	....................................	TGAAAACAAGCGCAAAGCTGTCAGAAAACA	
   1788181	    36	 100.0	    30	....................................	AGTTATCAATGCTATATGGTTTCTCATCTT	
   1788247	    36	 100.0	    30	....................................	GTTTAATTTTGAATAATATCATGTTTACTC	
   1788313	    36	 100.0	    30	....................................	TATGTCATTGTGATTGTGGGAATACTTGTG	
   1788379	    36	 100.0	    30	....................................	TTAAAAGATTTAAACTATCAAGCGTCAATT	
   1788445	    36	 100.0	    30	....................................	TTCTAAATGCTGGTGACTGCTTTGCATAAA	
   1788511	    36	 100.0	    30	....................................	TTAAAAGATTTAAACTATCAAGCGTCAATT	
   1788577	    36	 100.0	    30	....................................	TCCTTTTTTAGATAATGTGCGATCACGGAC	
   1788643	    36	 100.0	    29	....................................	TTTTACCAATGCTTCCATATCGCTTATAT 	
   1788708	    36	 100.0	    30	....................................	TACTTGACGAATTGAAGATGACGGAATTTA	
   1788774	    36	 100.0	    30	....................................	TGGTTATACATTTACTAATCCATCAGCATT	
   1788840	    36	 100.0	     0	....................................	|                             	
==========	======	======	======	====================================	==============================	==================
        17	    36	 100.0	    30	GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC	                              	       

# Left flank :   CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTAAGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG
# Right flank :  CAAGCTAATTCTCATCTCACCGAGATGGATAGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATG

# Questionable array : NO	 Score: 6.26
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:58.33%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-4.70,-0.20] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.87,0   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
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