Array 1 53-812 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZEL01000048.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain MDH-9 MDH9_trimmed_contig_48, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 53 29 96.6 32 ..A.......................... CGTTGCTGGCTATTCGAACTAACCTGATTGTT 114 29 96.6 32 ..A.......................... GCCTCAGCATTGTCATAACCCCACGCCTGGCA 175 29 96.6 32 ..A.......................... CGGCGGCGGACGCCGCTCAGATAGCCAAAACC 236 29 100.0 32 ............................. TATACAGGATTCTCACACTTTGGTTTGGTCGA 297 29 100.0 32 ............................. CGTTTTTTTTATTTGTACTATTGTCAGTACCC 358 29 100.0 32 ............................. CGGAAACAAACAAAGTTTTGCGCGATTCCACC 419 29 100.0 32 ............................. CACCAGGTAACAATATCGTCCCCGACCTTTAT 480 29 100.0 32 ............................. GCGAAATTCCCCAGATACCGCGCATCGGCACT 541 29 96.6 32 ............T................ CAAAATTAATGTCCAGGACCTTATTAAGTTAC 602 29 96.6 32 ............T................ CTCGGGGATTTTGTGCCACCCAAAACGCTCGC 663 29 96.6 32 ............T................ GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 724 29 96.6 32 .............T............... CCGGATGAAAACGCCTACCCGGAAGACTACGA 785 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================ ================== 13 29 97.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCGCCAGCGGGGATAAACCGTGGCGCAGCAACCAGATCCCGCTAACGAACCCG # Right flank : GTTGCATAATTATAGTCTGTGTACCAGTAATGGCTGGTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCATTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGACAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAAGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 5.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.62, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 17573-18517 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZEL01000048.1 Salmonella enterica subsp. enterica serovar Schwarzengrund strain MDH-9 MDH9_trimmed_contig_48, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 17573 29 100.0 32 ............................. AAACATCCGATCAAATACTGCGTTCGTTTGAG 17634 29 100.0 32 ............................. CGTATTTTTGAACTGGCCAGCGCCACCGATGC 17695 29 100.0 32 ............................. GGTTACGCGGGCGTCTGTTAAAGAGTCCTCGT 17756 29 100.0 32 ............................. GCCGGGGTTTCCCAGAGGCATTCTGATGAAAG 17817 29 100.0 32 ............................. CGAATGCAGATGCCTCCCGTACTGCCGCCGGA 17878 29 100.0 32 ............................. GATTGGCCCTTAGATAACGGGAGATCAAGCGC 17939 29 100.0 32 ............................. CATAACCTTCGCTACCACACTTGCCGGTACTT 18000 29 100.0 32 ............................. CCTTGAGGTTAGGGGAGTCAGGAAATTGCATT 18061 29 100.0 32 ............................. ACAAAATCGGCGGCCCAATCGCCGGCGCTGAC 18122 29 100.0 32 ............................. GCCTGCCGTCTTTTTATTGAGGTCTGTAAACC 18183 29 96.6 32 ............................T TAATCATTTTGTTTAAATCCCGGATCACCTCC 18244 29 100.0 32 ............................. GAGTTATTGTCACTCGTCAGTGATAATTTTCT 18305 29 100.0 32 ............................. CCCGTTGAAGATCTGGACGCATGGGGCAAAGC 18366 29 100.0 32 ............................. GTGAGCTCGGTTTTAATTTCGTCGCTAAGGTG 18427 29 100.0 32 ............................. CAAAAGGCCGACAGTGTGTACACCTCTAAAAA 18488 29 96.6 0 ............T................ | A [18515] ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGAAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGAAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAATTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGTTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //