Array 1 35339-35130 **** Predicted by CRISPRDetect 2.4 *** >NZ_FPJA01000007.1 Selenomonas ruminantium strain C3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 35338 28 100.0 32 ............................ AAGAAAATCTATGACCTGTCAACAGAGAAAGG 35278 28 100.0 32 ............................ ATGGCCTCAATGGTCAAAATTTTGCTTTTTGC 35218 28 96.4 32 .........C.................. AACCAAATTTTTGCAGCCGGTATCATGTCCGG 35158 28 89.3 0 .........C.......C.........C | T [35133] ========== ====== ====== ====== ============================ ================================ ================== 4 28 96.4 32 GTTCACCGCTGTGTAGGTGGTTTAGAAG # Left flank : GTAGAGACACTGCGGGTGGCAGGCGGAATCATTCGCAGCTATAAGGATGTACGCTTACTTGATACGCTGACGGATATTCCCTATGGCTATTTCCTGATGTTAAGGCAGGAGGCGTTAAATGACGCTGTGGGTGATGATATGCTGGACAAAATGATTCATGCATTACAGCAGGAAAGCACACTTATCCCGCTGGTAGTCGGCTTCAAATCACTTTCTGAGGTGGGGCGTGTGGAAGGTCAGCGCGACCCGGAAAAAGACCATTGCTTTGTAGAAAGTGTTTTCAGTCTGGGCAGTTTTGAATGCAGTAAAAACGTGGAGGATATCGACGCATATCTGTGGCGCTATAAAACGGAGGAAGGGCTTTATCTTTGTACCATAAATTGATAGGTGCAATTTCTCTCCGCTAGAAAGCAGGCCGAAGAATTCTTTGTAAAAAAGGGATTTTTACAGAGATACTCATAAAGCCAGTAGTATCAAGGAGTGACGTGGTTTTTGCTCCA # Right flank : ATAATCGGCTTAAGATTGTCGTTGAGGAATGGAATATGTAATGATTAGAAGCGATGATGGAACAGATTGGGGGAGTATAACCATGGAGAATACATATGGGTATAAGCCTTTGAGTTGGGAGCTGATTGAATTATTACGGAATGGAGAGCCTGATTTTGAAAAGGCTGAACAACTTATCAGCCAGGGCGCAGATGTCAATGACCAAGGGGATGATAAAGAAGAAAATGCACTATCAAGTTTAATACAGGATTATTATCAGTCGAGATGGGGCAATCCAGAGCAGAAAGTTTGTTCTGATTGTGAAGAAGATGGTTGTGAATCCTGCGAACATAATCTAAATCCTAATATGGGTGAGTCTTTACTTAAAATTATAAAATTCTTTATTGACCATGGATTTGATGTAAATAGACAAGAAGGCAATTATGGCAGACAGTGCTTGAATGCATTAGTATTTACTTATGATAAATGCATTATAGAGGCAACAAAGCTGATTTTTTCTG # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCGCTGTGTAGGTGGTTTAGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGTAGTTTAGAAA with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.30,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 280565-281329 **** Predicted by CRISPRDetect 2.4 *** >NZ_FPJA01000004.1 Selenomonas ruminantium strain C3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 280565 29 100.0 32 ............................. TGGGTATGCAACAATCCGAATTGCGTGCGCTA 280626 29 96.6 32 ........T.................... CAAGAACAAGAGAAGCAAGAAGAAAAGCAGAA 280687 29 100.0 33 ............................. CAGAAACTAACCGCAGATGTGGTTATGAGATGT 280749 29 93.1 30 ....A...T.................... CTCCCAAAGTATGACGATAATGATGATTTA 280808 29 100.0 34 ............................. TACACGGTGGCTACAGAGAACTGTGCAGACCGAC 280871 29 100.0 32 ............................. GACAATGGATAGACCTTTCTGAAGCTGATGAG 280932 29 100.0 32 ............................. GTGCCAGCTTATATGAAGCATCCATGACAAAT 280993 29 96.6 32 ..........T.................. GGCTGCAGGATAAACTCTGTCAGCTTGAACTC 281054 29 96.6 32 ............T................ TCCTTGCTGGCAAGGAAGATGCGCCGATGATG 281115 29 100.0 32 ............................. GCAAATCATACCGTTGTTTGGTATGTGGAGCC 281176 29 96.6 33 ............T................ TACACCATTGCAACGGAAAATTGCGCAGATAGA 281238 29 100.0 32 ............................. GGCAGAAATGAGCCGTTAGTAGACAGCGGTGA CA [281250] 281301 29 96.6 0 ...........................T. | ========== ====== ====== ====== ============================= ================================== ================== 13 29 98.2 32 GTATGCCCCACGCATGTGGGGATGAACCG # Left flank : GCCGATGGCGGATAAATTCTGCCTTTATGATGATGAAGATGAATTATTCTCTGATGACGAAACAGACTTTTTGCCAGCAAAAACACGTTTGGGAGAAGCAAGTATAAGGATTGCGATTATTCCGCAAGAAGAATTTCAGAAACTGCCGAAAAATGGCAGAGTGAGGCGGGAGAAGGCAAAGGAAATTTTGTCCTGGAGTGTTAGTGTATCTGCTAATAAACTAAAGCTGGAAAATAAAACTTGTTATGGTGGAACGCAGCCATGGAAGGGAGATGGATTGCTGCGCGGACTGTTTGTATTGCCAGGGAACAATGGACGTTGTGGTTTTGATGATGGCAGTTGGATAAAATTGAATGATGAATATGGATTGGTTATGAAAAATGCTAGAGGCGAATCGCTATAAATGTTGATTTTTCTTAGAATAAAGGATTATATTGATGTTGGACACATAGTACTGCATTTTGGACTAAAAACGGCGTAATATAGCCATTTCATCTAGT # Right flank : GGAGGCCATCAGTAATCGAGCGGTGGAAGATTTTTAGGTACTTTGGGAAGAAGCCCTTGCATTTGACATGTCAAATATAAGGGCTTTTTGAAAGTTAGAAGGAAAAATTTTCTCTATGTAGAATATTATGAAAATATGAACAAGTTGTAATTAGATGTAAAAGAGGGGGAATATGAAGTGGCAGGATTTTTAGGAAGAAAGACAGCAGCAATCATAAGTACCATTATCCTGGGAACGAGCATCATTTTTTCCGGGTGCGGCCAACAGGAACAGGCCGAGCAGAAGAATACGCCAGTGAAAGCTATGAAGGTAATCCAGCAGGATACACCGATAGCTTATTCTTATCCCGGTCATTTGCAGGGCAAAGAGGAAGTACAGGTACATGCCCGTGTTTCCGGCAGTATCCTGGAAAAATATTTCAGTGGCGGCGATTTTGTTTACGCCGGTCAGCCGCTTTACAAGCTGGATTCCCGGCAGTATGAAACGGCTGTAATTTCTGC # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.96, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATGCCCCACGCATGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGCATGTGGGGGTGAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //