Array 1 256722-255610 **** Predicted by CRISPRDetect 2.4 *** >NZ_CQBJ01000003.1 Yersinia pseudotuberculosis strain 1231, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 256721 28 100.0 32 ............................ ACGGTTACCGAAACCACCAAACCCGCCATTAC 256661 28 100.0 32 ............................ TCGTTCACCTGAGCGCTTGACTTCAATATTAG 256601 28 100.0 32 ............................ GATGTCCATTACGAACCTCGGCAGTAATGTAT 256541 28 100.0 32 ............................ TATGAGAGGTAGCCTTTAGTAGCGCAATGCTT 256481 28 100.0 32 ............................ ATATGGATCAAAGTCAGGCAGCTCCACCTCGA 256421 28 100.0 33 ............................ ACAATCAGCTATTAAAGAAGAAGAAGCATTTAA 256360 28 100.0 33 ............................ ATGTTCGACGATTCATTTTATCTGTATTTCAGT 256299 28 100.0 32 ............................ AATCTGGCGGCGCATTATCTGGTTTTATGTAT 256239 28 100.0 33 ............................ ACTAATAGTTGGCCAGCTGTAGGCTCGTCTGCA 256178 28 100.0 32 ............................ AGAACCATTTCAGCCGCTTGCTTACCACTCAT 256118 28 100.0 32 ............................ GGACAGTGTCATGAATTTGGCCCGTGCCGCGT 256058 28 100.0 32 ............................ TCCATGACACCGGCACGCGTCAACACCGAAAT 255998 28 100.0 32 ............................ AGAATTTACAGCCGTTATTTAGCATTGCTGCC 255938 28 100.0 32 ............................ ATTTACCCGTTCAAATTTAGGAATATAGAGAA 255878 28 100.0 32 ............................ ATCATTATCGATAAATGCGCGACGCATACGAG 255818 28 100.0 32 ............................ AAAAAATCTGGGATATTAAACGCTGTTGCACA 255758 28 100.0 32 ............................ GCAATCCGATGAATTCAATCTACCTGCTATCT 255698 28 100.0 33 ............................ TCCTAGGCGCTTACCCATTCCATAGCGATCGTT 255637 27 85.7 0 ...................A-.A.T... | C [255613] ========== ====== ====== ====== ============================ ================================= ================== 19 28 99.2 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ATTGCTGCCCACGGCGCTGGAGGGCGGCCAGAACTACACGGTGTAGCACCAGATGGATCACCACAGAAATCAATAATATTAGCCCAATCACCATCGTCAATGACATCACATCGGAGAACTCCATCCCCAATCTTTCCAGCCACTGGCTTATTCTTTGTTGCATCACTGCTCCTATAAAGCATCAATCTGACTAAAAGGCCTTAGCCTAAAGGCTATAGGCGCAGGGGGTGCACCTGTTTACCCTTTTTTACATTGTGGTTCTGTATCTTTGTTCGATTGTTGCCCCGCGAGGGGGGAGACATATTTATAGGCTGTGGTTTATGACATGGTTTGTGGAATTGTACTGTGGTTTTATTATGAGTTATGTTCTGACCCTATTTTTTTAGCTACTGCTAACTCATTGATTTTACATTGTGGTTATCGGTGGTCTAAAAAAAGGGTTTTTTCCCCATTAGCGAAATAAGTATTTTACAAACAGGATGTTATCGTATTATCTTACT # Right flank : TTCTGGACCATGCGTTGATGCTATTTGGGGAGCAAAATTGCGAGCGGAAGCGCATTTTGTAACTGACAACAGGGAGAATGGCATCTTTTATTACTGACTTTATGAGTATTAGAGTAGGGTAAATAGCAGGTAGCATATCAAGATATACCCGTCATACTTCAAACTGCATGTATGTTGGCTGCGCTCAATTATCCCGGTCACTTACTGGTGTAAGTGCTTGGGGATTTACTCAGTTGCTGGCTTCCTGCAACTCGAATTACTTTGGGTATAGAGAGAGTTATTTTTTGGAAGAATATCTGCTAATAAAGCGCTAACGGAAAAATAGCGCGGTAGATATCCCGCTAAGGAGTTTTTTGGCTATGGAAAACGCTATTCATTCCTCTGATTTGAAAACGATCCTGCATTCAAAACGATCCAATATTTACTATTTAGAATATTGCCGCGTATTGGTTAATGGTGGGCGAGTTGAATATGTCACCGATGAAGGTAAACAATCCCTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 83865-84972 **** Predicted by CRISPRDetect 2.4 *** >NZ_CQBJ01000005.1 Yersinia pseudotuberculosis strain 1231, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 83865 28 100.0 32 ............................ AATTCCATATTCAATCCTTAATAAAAAGCCTC 83925 28 100.0 32 ............................ TTCATCACCAATGCAGGGGGATATTTAACCGC 83985 28 100.0 32 ............................ AGTCTGGCGGCGCATTATCTGGTTTTATGTAT 84045 28 100.0 32 ............................ TGCGTACACGTATCCATTTTCATAAAGCCGTT 84105 28 100.0 32 ............................ TGAGCATTGATTGACATAATTCATGCGGTCAC 84165 28 100.0 32 ............................ CCCATTCTTACGCGCCCCAGCCACCGCCATGG 84225 28 100.0 32 ............................ ATTAGGGCAGCAGCGGCTGACATGCCGGGCTG 84285 28 100.0 32 ............................ CGGAGGCGGCTTAATCGCTGTTACTTACCGTT 84345 28 100.0 32 ............................ TCGAAACGTGCGACTAATTGACTATTCGAGTC 84405 28 100.0 32 ............................ GAATGCTGGCCCCAATTCCGTTTGTATTATAA 84465 28 100.0 32 ............................ CAAGGACACTTCATCGTGTCTGCGTCCAAATT 84525 28 100.0 32 ............................ CAAGGACACTGACAGATGATGGCTGTTCTGGC 84585 28 100.0 32 ............................ AGATACTTTTTGGACGCAGAAGGATACTGCGA 84645 28 100.0 32 ............................ ACAAGCAGCAGAATGATTTTACACGGCCCGTG 84705 28 100.0 32 ............................ TATACGCACATCTGCGAGTAGCGGGCTTAACC 84765 28 100.0 32 ............................ GTGTCGGTTTGTGGATTCTTGAAACTGAAAAA 84825 28 100.0 32 ............................ ACACTCAAACGAGTATCGTGGCGGCAACACAA 84885 28 100.0 32 ............................ GTCAACGCTTCACTCCCTGCGCGGGGTATAAC 84945 27 89.3 0 .....................CC.-... | T [84971] ========== ====== ====== ====== ============================ ================================ ================== 19 28 99.4 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AGTTATAAGGCAAGCTCACGCTCATCATTAAGTTTATCAATCCGGCACAGTCTCTGTTGCCGGATTTTTTGTATTCAGAAAACCAGGTCAGAGCGTATTGCCGTGCGGCTACAATCTCAATCGTGATTAGGCTAGAAAAATGAATCGAGGTGATGAACTCCAGCAGGCAGACCCTCAACTCGTCGTGGGAAAATACCGGATAGCGGATAATGCCGCCCCTAATTCGCAATAGACGATACCGAGTAACCGTACCCATTAGCCATAGTATTACTTTTTTAGTTATTTAATTTGGCAGGCCAGAAACATGGGCCACGCCACCCCCCCTCCTCAGAAGAGTAATCATTAGGGTTACGTCCCCCCGATTCTTGTGACCCTCTTTTTATCACTATGACTAACGTATTGATTTTTATGCTACTCAGGTATTTCACTAAAAAAAGGGTTTTTACGCATTTTGCGCCATTGCTCATTGATAAACATCGGGTTATCCGTATTATCTTACG # Right flank : ATCTCAGCTCTCTGGCGGCGCTTTATCTGCAAATATTAACTCACTAATCCCTTGGCATATTCAAACAACGCTTTTAGCAGCGCAAGTTTCTCTTTATCGTCTTCATACTGGTTATAAAATTGTTCCAGTTGCAAAACATAATCTTGTACCCGCTCAGGGCTAAGCGCTTCACGGCGATGCTGTAACCAACGCTGTTGTTCGCTGTCGTTCAAGGTATTTGGGTAGTTACGGGCACGGAAGCGGAATAGCAGGGCCTCCAACCGTGGGTCCTGAAATGTCAAATCCAGTGCTGGCAGATTTTGTGGCTCAGTTTGCTGGATAATCTTCATGGTGGCGCGGTCAGCATCACTAAAAAAGCCGTTATACAACTGTGTATCCACATCATCGGCAACCGCGAATGGCTCAGCTTGTGCAAACAGCGCGACCACTTTTTCACGCACCTGTGGGTTTTGCCGCAGCAGTTGTAGATTTTGCAAACAACGCTGGCGATCAATCCCCAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //