Array 1 23942-23394 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYFK01000001.1 Anaerostipes hadrus strain PEL 85 contig00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 23941 30 100.0 37 .............................. AAGCAGCAACGGTTGAGTTTTTGAAAAGCGTTGAGAG 23874 30 100.0 36 .............................. TGCTTTCCGCGACTGTAACCAAGACCATAAAATGTG 23808 30 96.7 36 ...............G.............. TAAATACAGTTACCTGTTGTTTGATTATCCAGTTCA 23742 30 93.3 35 ...............G.A............ TCCTACATATTTACTATGTCACTTTTAGATTTTAC 23677 30 86.7 27 .........C......T..C.........A ATAGTGGCAAGCTGCTCTGCCTGAAGA Deletion [23714] 23620 30 96.7 35 ................A............. TCGGAAAAGTGCGAGGCAAAGAAGCTTTATTTATG 23555 30 93.3 36 .........C......T............. GGCCGACTCTTTATGAAATTAAAAAGGATGGTGTTC 23489 30 90.0 36 .........C......TC............ ATGGTAAACAAACGTTTATTTCCTGTTTGTGTACTT 23423 30 90.0 0 .........C............G......A | ========== ====== ====== ====== ============================== ===================================== ================== 9 30 94.1 35 GTTGAATAATAACATAGGATGTATTGAAAT # Left flank : GAAAAATTAGCGGATCATATGATTCATAGGCGCTGTGTTTACATTCCGTATTTAGGAAAGAATGATCATCCTGCGGATATTCATGATATTTCATACGTTGAAATTTCTGAAAACAAAGAGTTCGGCTGTATGATCAACAGTTTAAGTCCTTATGATGGAATTAACTTCGATATGTCAGAAGCTACATTTAAATATGAAGAGTTTCTTCCGATCCGTCTGGACTCAGAACTTAATCAGCACGAATTACAGAAATTTATTTTAACAGATGCGATCGCAGAAGGGGGCCAAATGGCTGTTTATAAAGCAGAAGATAAAAATATCGTTTTTTATTAAAAAAGAATTACCAAGTGATTTTTTGAAAAAGTCTGTCAAATGGCGTAAATACGTGGTTTCTTACGAATAGCTGATTTTCAATGGAATGGTTGGTAAAATGTTGGAAAATGGCTTAAGATCGTGATTTATAGAGATCAGTAAGATGCAAGAATGACGGTTTTTCGTTG # Right flank : AAATAATCGCAAAATTTTACGATTGAATTTGTGATTAAAAATACGCATAATCTCATTTTTATATGTGAAACTTATTTTCCTTTTCATATCTCATATTTGTTATGTAAAAACATGACGAATAGAGAAATAAGGAGGATACGAACATGACAAAAGTAGATAATCCAATTAAATTAGAGAGTTTGATCTTAGCAGTCACTGGAATTCTTTTATATCATCTTAGTATGACATCTTTTGCATTAACAATGATTTTCTTAATAGCAGGAATCGTTGAATTATTTGATGATTTTACTTCAGGTGAAGATACCGCTTTTTACAGTTTCTTTTTTGTAAGAATTCTGAAATTAAGAGGATTTGACTGTGTGGGTGTTGCAAATGACGAGAATGATACATATTTTTTGTATCAGGATCAGACAAGAAAAAAACTATATTGTTTTAAGCAGGAACCAGAAGAATTTGGGCCCTATGATAAACGATATGTAGGTATGATTAAAAATCAGGCG # Questionable array : NO Score: 8.36 # Score Detail : 1:0, 2:3, 3:3, 4:0.70, 5:0, 6:0.25, 7:-0.00, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAATAATAACATAGGATGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 2 29703-29334 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYFK01000001.1 Anaerostipes hadrus strain PEL 85 contig00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 29702 36 100.0 30 .................................... TCCAGGGTTCCACCCTTGCCACTCGGCAAC 29636 36 97.2 31 ..............................A..... TTAATCCAATAATATCCTTTCGCAATGGGAG 29569 36 97.2 31 .........C.......................... TTAATCCAATAATATCCTTTCGCAATGGGAG 29502 36 97.2 30 ...............................C.... CAAGGAATCACTCATTTAATGCTTTATAAT 29436 36 94.4 30 ......G........................C.... TTTCAATAATTTGACCACAACATTCGCATC 29370 36 75.0 0 ......G...G..............CAC....TTCA | A [29336] ========== ====== ====== ====== ==================================== =============================== ================== 6 36 93.5 31 GTTTGATAGTAGTGTAATTTCATATGGTAATAAAAC # Left flank : AAAATCTTATATGTGAAAATAAAATAATTAATTTTCTTTCATATTTATAATGAAAGAACAAATTATATAGCAAAGGAGAAAAATTATGAGATCATATAAATCATACGAAAGTAGTTACATCGGCGATAGTAATATCGCAGCATTAATTTTAGCAGGAATTTCTGACGGAGGTTTGCAGTCAAAGGTATTGGATTTTGGAGAAGATGGCCGCTATTCTGCATATATCGTTGATGAAGATGCAGAAATTGGATCACACTATGAAAAACAGCATGAATTTACAAACTGGATGACCATTTATGACGATGACACATGTGTTCGCACTTATCACGCTGAAAAGATCATTGTTTATAGAGCAGGGGATTTCGGATGTATCATTCAGTTGATCCATGAGAGATAAAAAAATTTACTCTCAAATCTCTCATATTTATAGTAGATAAAGGTTAACATCTAATTCCATATGAAATACAACATGTGCGTGTAGGCATGACTTAAAAACTGAG # Right flank : TAATTTAAAATGATCGCTCAATTTTTCATTAAATTGGGCGTTTTTTGTATGTAAAATTTTATATTTTCATATAGCGTTGAAAATCGGTAGAAGGACAGATATTTTTCATTTGTTTTTTTTCTTAAAGACAGGCAAGTCATATTGCTTGTCTTTTTTTGTTTTCAAAATCTTATATGTGAAAAATATTTTTTTGAATTTCTCTCATATTTATAATGTCAGAAAAAAATAAACAAAGAAAAGGAGATTAACTATGCGAATTAAAAAATTATTAATTGTCGGAACTTTAGCATTAGCCACAACTGGATGCGTATCTGCATATACTTATGCAGCAACACCAAACGACTCAACAGAATCATCGATTGACACATCAAAAGATTCAGCAAAAATTAAAGCTGACTCTGAAAGTACAACTGAAGCAAAAGAAAATGCTGATGAAAATACAAAAAAAGATGTAAAGTCTGAAAAAAATGATTTTGAAGATAATGAATCCACTGAAGCAA # Questionable array : NO Score: 3.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGATAGTAGTGTAATTTCATATGGTAATAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [12-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 17363-17662 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYFK01000035.1 Anaerostipes hadrus strain PEL 85 contig00035, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 17363 36 100.0 30 .................................... ATGTACAACATGGTTATAAATCCTTATTAG 17429 36 100.0 30 .................................... GTTCCAAACTTGCAAACGACTAATTGCAGC 17495 36 97.2 30 ....................T............... AGCAACTGGGTAGATATTGTAAATATTGTA 17561 36 97.2 30 ....................T............... GACCAAGAGTTTTCTTTGAATCAATGAAAA 17627 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 98.9 30 CCTTTGGAATCATCTGATTTCACACAGTTCTAAAAC # Left flank : GATCAACTGTTACATCTTTCTTTTTTAAGAATCTTCCGCAGTATGCACATATATAATAATCTTTGAAGATTGGACGATTTTTATCAAAAAACTTCTTTCGGTAATCTCCTGAACGAAGATAACTGTTTGGATAACTCTGGTATTTTGTCCGATAAGATTCAAGTAATGTTTTCATTGTTTCAATCTCATTTTCATCATCCAGTTGTATCACATATTTTCCTCTTACATGAGAAAAACCTAAAGAAGTTAAATGCTGTTTGTAAAAGTTTCTTCTATTTAAAAGCTTTCGATTTCCTTTTGGAATCACGTCTTTTTCTAAAACTTCAATGATCAAGTTTACACCCTCTTTTCGATTCCCCCTCTTTTCGATATTTTTTATTTTCATGTTCAATAAAAGAACAAAGTTAAGTCCTTAATTTATAAATTGCTATCGCCGACAGCTTTTACCTTAGTAAATTAATTCGATAAAATTCTTATTTTTACTCACTGTGTAATTTGGC # Right flank : CTATGATCATTGTGTTAGTGGTGTATCTGCACCTTTGGAATCATCTGATTTTATTTTTCATCATCCTCAACCGATGGTTTTGCTTTTATTCTTTTTCGTAAAACAATAACTGCTGCCAGAATCACAGCAAGTGATACACCACCTGCAGTTGCCATCGCCGGCACACTGTGAATAAATCTGATCCATAGGTTTGTTGTAACATAAATGTTATCCATCGTAATTTCAGATTCATTTCCCGCGGCATCCTTCACAATTACATGAATGCTTTGAGCTTCATCTTTCTGATCCAGAGGAATGTCAATCTTTTCAGGAACTTTTTCATCGTATTCCTTTATCAGATTATCATTGACATAAACTTTCGCACTCTGTAACAGCAAGTTGTCTTTTACAAGAACTGTTGCGGTTCTTCCATCCTGGGCATAAACCTTACCACCTTCAATGTTTGAGATTAAGATGTTTGGTTTTGTTGTATCAACCCCAAAACTGATTGACGCTTTTTT # Questionable array : NO Score: 3.01 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTTTGGAATCATCTGATTTCACACAGTTCTAAAAC # Alternate repeat : CCTTTGGAATCATCTGATTTTACACAGTTCTAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.50,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 5224-5967 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYFK01000032.1 Anaerostipes hadrus strain PEL 85 contig00032, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 5224 30 100.0 35 .............................. AAAGATTTACCACGTGCCACCATTTCTAATATTTC 5289 30 100.0 34 .............................. ATGTGTATTTATGTAAAAAATATTTTAGAAATTA 5353 30 100.0 35 .............................. TGGAGCCGCCGCAGTGCTAAGCGTTAAGATCTGGG 5418 30 100.0 34 .............................. TATAGAAAATCCGATTGAAATTTTTTTGATCTTA 5482 30 100.0 35 .............................. TTGTTCTTCATTCTTTTTTAAAATAATTTTTCTCT 5547 30 96.7 36 ...............G.............. TATTTACATTGAACTAATTAAATTTTGAAAGGAGAC 5613 30 100.0 36 .............................. TATTTAAGTTGATATTAATATAGGAAGGAGGTTTTG 5679 30 100.0 36 .............................. AGGAGTCCGGCGATACAGAATATACTGGTGGTATAC 5745 30 93.3 36 ...............G..G........... ACGTTTATTGGAATACAGGGAAATTTGCAATTATCA 5811 29 90.0 33 ......-........GA............. AGGCCTGATTAGCTATAAGGGCATTGGGATACA 5873 30 86.7 35 .........C.....GTA............ ATGAAATTTCGTAAGACAAACACAACAAAAAGATG 5938 30 86.7 0 .........................TTTT. | ========== ====== ====== ====== ============================== ==================================== ================== 12 30 96.1 35 GTTGAATAATAACATAGGATGTATTGAAAT # Left flank : AAACAGAGGACTGGTAAACCGAACAGGATTAGCTGTTTTAAGACATACAAGAACAGCTTCTACTTTAACAGAATTTGGATTTATCACAAACAAAGCAGAAGCAACATCTATGAAAGCAAACACAGGCAAATATGGAAAAGCAATGTATAATAGTGTTGTAAAAATGTTTCAAACAAATCCATCAAAAAGATAAAGATCACAAAAGAGGAACAGGTATAAATGCCAGTTCTTCTTTTTTTTGACCATTTTGGTGAACTCAACGATATGGTCGGTTGTATTTTTTATATGTGATTTTTTTTCTGAAGGAAATCTTTCATATTTATAATGAAAGGTAAATTCTTACCAAGCATTTTTTTGAAAAAGTCTGCCAAATGGCGTAAATACGTGACTTCTTGCAAATAGCTGATTTTTAATGGAATGGTTGGTAAAATATTGAGAAAATGGCTTGAAATCTGGATTTATAGAAATCGGTAAGATGTAAGAATGACGGTTTTTCGTTG # Right flank : TTATATGTGAAAATTCTTTCTTAAAATTTCTCTCATATTTATTATGTAAAAAACAACACAGGCAAAAAAAAGGAGAGTATATATGTTACAAGATAATATTATTTTAAAAAAAGTAATCGTTCATGTGTCTCAGCCATCCATTGGGAAATATAAAGCATCCGAAGAATGTATTGACTTGGGAACAGATTTTACGGAATTTTTAAAGAAGCAGATAGAAAAGATGACAGAATCTGATGATGCTGTAAAGATCGATCTGAATCATGCTGCAATTACCATTAATCTGGATAATTTTGAAAAAAATACAGCCAAATTAGGAGAAGAACTCTATGATATCTGTTGTGATAGTGTCAAAATCCCAGATGCAGATTTAGTATTCCTTACTTTTACTAGTGAAGGAACTGATTATTTTGGAATGTTGAAAATGGATTATAAACCATTCTATGGACATCAGAAAGGAAGCACAGAGGTTGTCACAAAACAGGTTATGACTAATACATGTA # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAATAATAACATAGGATGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 1 646-1007 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYFK01000096.1 Anaerostipes hadrus strain PEL 85 contig00096, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 646 30 100.0 39 .............................. ATTTATTATAAAAGTGAAAAAGCGGAAAAAATATGGTTG 715 30 100.0 35 .............................. GTTGCAGTGATCGTGTGGTTTTCACCGTATCCGCA 780 30 100.0 35 .............................. CAGAAAGAACAGGGAGAAGAACCCGAAGAAGAAAA 845 30 100.0 38 .............................. TATCTACACCCCTTTCTAAACATTATACAGTTCCGCCA 913 30 100.0 35 .............................. CTGTCAAAACAGATCTGTTCGATAAATTCTTATTT 978 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 6 30 100.0 37 GAATTAATAGAATCATAATGGAATTTAAAT # Left flank : GATGGGTCTTTAGACTTAGCGTCGGTAATAAGCCCTTATAGGGCTAGTACAAACCACCGGCTAAGCCGGTGGTTTTGATTGAAAATAAGCCTAAAAATAGCTGTGCCCACGTCATGCCCACGGAAATTTTCTCGCGTGGGCATGACTTTTATAAAAATGACGATAAATTGGATTATTCAGACGGTGATATTTGATGCATATATGACTGTATAGTGTTTGCTCGAAAAGTATATATAATGAATGCGTGTATTTAACTTGCATATTTAGCAAATAAGTTTCATAATAGAATGTGTCGAACAAAATCAACTTGAAAAATTAGGGGTTTCTGTCGACCCCTGATAGTGCAAAAAATATAGGGGATCGACAGAAGGCGGAAACGCCTAAAATAGGAGGTGTTGCAGAAATATATGATTAGGGACAAGAAAGAAATGTTGAATTTTGAAGAGGTCGACAAAATAGAGACGTTTTTTGGCTTAAATAAGGGGATGATTTTGGGACGG # Right flank : TATTGGAATCAGGCTGTCCTGTAGTTGATATGCTCCCTTCTAGGTAGACAAGTGAAATAATAAAAACTTGTCACTTAGGAGGGAGCATATTTTATGTCTAAAAGAAAAGTATCTGTTGAGAATAAGATATATGCTGTAAATCTATATCTGGATGGAAAAGAAAGCCAACAACGAATTGCCCATATGTTTGATGTAAGTCTCGCATCTGTCCAACAATGGATTCGAAACTATGAATCTATGGGAGCAAATGCATTTACATTGAAAGGGAATAAAAAATATTCCAAAGAATTGAAACAGCAAGCAGTCTTAGATTATTTAGCAGGCTATGGTTCTCAAGATGATATCTGCAAAAAATATGGAATCCGTTCAAAAGGTAAGTTACAATCTTGGATAAAGAAGTATAATGGTCATGAAGAATTAAAATCTTCTGGAACAGGAGGAAGCATTATCATGACCAAAGGAAGAAAAACTACTTTTGAAGAACGGGTTGAAATAGTACA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAATTAATAGAATCATAATGGAATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:83.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //