Array 1 85533-84652 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP038146.1 Streptomyces sp. S501 plasmid unnamed, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 85532 29 100.0 32 ............................. TCGGCCTGCGACGCCGATTCGGGGGCGGCGAA 85471 29 100.0 32 ............................. CGCTGCTGCGGATGGGGCTCCGGCTGCCCATG 85410 29 100.0 32 ............................. ACCGTGCACATGCCGTTCTGGCTGGCGCTCGT 85349 29 100.0 32 ............................. GGGCACAGGGCGATCCAGTCATGAACCCTGGT 85288 28 96.6 32 .....-....................... TGTCCTGGGCGCCACCAGCAGGCACGACCGGT 85228 29 100.0 32 ............................. TGCGGGCCGAGCCCGATCAGCGGTGCGGACTC 85167 29 100.0 32 ............................. GCCACGGAGAGCATCTGTGCGGCCTGTTCCAC 85106 28 96.6 32 ....................-........ GACCGCTCCGACGTCACGTACAAGCAGGACGA 85046 29 100.0 32 ............................. CATCTGGCCAAGCTGGACCGGAGCTTCAAGCC 84985 29 96.6 32 ...............A............. CGGGCCTTCCTCGCCGACGCGGCGGCGCTGAA 84924 29 100.0 32 ............................. ATCCCCGTGGAGATGCGGCTCAAGACCGGCGG 84863 29 100.0 32 ............................. GCGGTGCAGGGATCCGTCGTACACGATGTGGT 84802 29 100.0 32 ............................. GGCGTACTTACCGGCCGGATCGAAGAGGCCGT 84741 28 89.7 33 ........T...G............-... TTACCGGCCGGCGAGTTGCCAGTGCAGTCCCGT 84680 29 86.2 0 .........A..G.G.............G | ========== ====== ====== ====== ============================= ================================= ================== 15 29 97.7 32 CTGCTCCCCGCGCACGCGGGGATGGTCCC # Left flank : CCCTCGCCCAGGGCGCGTAGGAGAGCGCGGGACTGCCGGACACCGGCACGGTGGGCGTCGAGCAGCTGCAGAAGGCGCGCGCCGGGCTGGCGGGTTGAGTTGCGAGCCTCGACTGCTCGGTGAGCCTCTGCGGGATCACGACTGCAGCATGCGCCTCCCCGCCGCCACCCCCAGAGGCGCCGGGGAGGGCGGCGGCAGGCGGACATCGGAGAGTACCTGGGGCATGCGTTTGAGGGGCACTTGGGTCCCGGCTCAGTGGGCCTGCGACCGGCAGTGATGCTCTACCAGGTGCTCTTCCTGGCGGACAGCTGTGCAAACCGGTCCGTGGTCACCGGAGGTAGCTGCTTGCCGGGGCCCCTGGTTGACTGCTGATCTCGGTAGAGTTCCAGCGCAGCAGCTCTGGCCCTCCAAGAGACACGTGAACTATGTCTGGAATGTCGATTTCTGCGAAAGTGCACAGACACGCGGTGCTTCGCCGATGAAGCTGCAGGTCACGCAGC # Right flank : GGTGGATCGAGCCGAATTTCCAGATTTCGGTGAGCGCGCGGAACTCGGTCCAGTCCGTGATGAGCACTTCGTCCCGGAGGACGACGCGCTGGCAGGTGCAGCCACTGTCCTCACATGCCGCGCGCACCGCCTTGGCGAGCCCGAGCGAGAGGGTTCAGCGGGCTGAGGTGTAGGCGGTGAAGAAGGGAACCTTCACCGGTGCCCCGCCGGGGCCGAAGCAACTGACGTAGAGCAGGACGGCACCGCTGCTCCGGTCCCACGGAGCGTGTAGGCCGCAGTAGTCGGCCCCGCGGCCGTAGGCCGTGGTCTGAGCGGTGTCGGACGGCACGGCTATCGACGGCATGGTGACCACGAAGGGCGATCCCGAACCGCCGAGGGTGTTGGTAGCCCCGCCGGAGTTGTAATTGGTCAGAGTGGGAAGTGATCCGTTGTACCAGAGATAACCGAATGCCTTGGGCGGGAATGCCGGGCCATGGACCGCCCGCAGGTGGGAGTAGCTC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 95786-95152 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP038146.1 Streptomyces sp. S501 plasmid unnamed, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 95785 28 96.6 30 ....................-........ GCGGCACCGGCTGCCGAACGCGGGGAGTGG 95727 28 96.6 32 .....-....................... GGGCCCTGCCACTCGACAGCCTCGCCCAGCAT 95667 29 100.0 32 ............................. GGTGTGTGGCTGGAGGACTTCGCCCACGAATT 95606 29 100.0 32 ............................. TCGGCAACGAGGGCCAGCTCTTGGGTCTGGGT 95545 29 100.0 32 ............................. AAACCGGTTCACCTGGTGCTACCGGCGCGGCG 95484 29 96.6 32 ............................A GCTGCGGATCTACTCCGGAGGGGCGGCCGAGA 95423 28 96.6 32 ....................-........ GGCTCGGCCCGAGCTTCTGGGTCCAGCACGCG 95363 29 96.6 31 ............................G AGCCAGGCACCACGCGAGGGTGCCGTGCCCG 95303 29 96.6 33 ...C......................... TTGGAAACCCGCAGGTCAGACCCGGTTGTGGGG 95241 29 93.1 32 ...C.........A............... GACGGAGCGATCGGCCGGTACCGGTTGAAGGG 95180 29 89.7 0 ................AC......C.... | ========== ====== ====== ====== ============================= ================================= ================== 11 29 96.6 32 GTGTTCCCCGCGCGTGCGGGGATGGTCCC # Left flank : GGCCGCAGGCCGCAACTATGGCGGGGGAGAGGACTTCGACGTCCTGGAGACGACCTGGTGACCGTCATCGTCCTCACGAACTGCCCTGCAGGTCTGCGCGGCTTCCTGACACGCTGGCTGCTCGAGATCTCCGCCGGGGTCTTCATCGGCAACCCGTCTGCCCGCATCCGTGACCTGCTGTGGGCAGAGGTCCAGGAGTACGCCGACCAGGGCCGCGCCCTGCTCGCCCACACCACGAACAATGAGCAGGGCTTCACCTTCCTCACCCACGACCACGCCTGGCACCCGGTCGACCACGAGGGCCTGACACTGATCCGCCGCCCGAACGCGAACAGCCCTTCCACTGAACAGAGTCCGAAAAAGGGCTGGAGCAACGCGGCGAAGCGTCGTCGCTTCGGACGGCGGTAACGAGAGATTTGGAACGTTTAGGCTTTATAGCCGTTTCGGCGAAACTACTCCAAAACGAGGGTTGCGCTTAGAAAAACTGCTGGTCAAGAAGA # Right flank : CACCCACCGCATCGATCCCGGCACGTGCCCTCTGTGCTCGAGCGCATCGACCGGGCACGGCACACAATCTCCTTCGTCAGCCACTTTGCCGAACCCGACTCCTTCGCCTTGACCGCCCTGGCACAGTGGCTCGACACCAGCCCAGGCGGCATGGCAACGACTGCGGAGGATGGAAAAGGCATGGAATCCGGCACGGAAGGCACCACCCCATCCAACCCTGTCCAACAACTTGCCGCGCACATACGAGACCAGCTCGGCGCAGGCCCGTTTTCACAGGCCGACGGCTGGACACACATGGGCGCCGTCATCAGCGACGCGAGCTTCCAGGCCCGCAGCCGCTACAAGGCGACGATCCTGCCTCGCATACTCGCCCTGCAGACAGCATGGCCGGACGCTGCCACGGTCAAGGGCTTCCAAGCAAGACTCACCACGGATGACCTCGCCACAGCCATGAACTTCCATCACGCCCGAAAGGTCGCCAAAGCCCACAACATCACTGA # Questionable array : NO Score: 5.54 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.45, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGTGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGTGCGGGGATGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 105432-107258 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP038146.1 Streptomyces sp. S501 plasmid unnamed, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 105432 29 100.0 32 ............................. CAGGAGATCACCGATGGACTACCTCGCCCTGC 105493 29 100.0 31 ............................. AGATGCTCCGTCAGATGCGTCGGATAGGCCC 105553 29 100.0 31 ............................. AACAAGGGGGCACGTACTCGCCCCGCAACTC 105613 27 93.1 32 .....-...........-........... TCCTCGGGTGCCGTTCGGCGGCCAGGTGGGCC 105672 29 100.0 32 ............................. GGCGCGGGCGCCGCGGCCGCGCCGGTGCTGAT 105733 29 100.0 32 ............................. CGCGGACACCTAGGTAAAGAAACAACAGAGTT 105794 29 96.6 32 ............................T TGAGGGTGTGCTGGCAGGCGTCACACGGGTCG 105855 28 96.6 32 .................-........... TGCCCGGCCGGCAGTCGAAGGCGCGGGAGCTC 105915 29 100.0 32 ............................. TACCAGTTGAAGGTGCGTGCCGCGGCCACCCC 105976 29 100.0 31 ............................. CCGGACCGGCTCATCGTCCCGGCCCCGGCGC 106036 27 93.1 32 .....-...........-........... GCGAGGATCCAGGCGTCGTGCTGAACGCCGAT 106095 29 100.0 32 ............................. GCACCGCCGGCCGAGCCGGACACGGCACCGTC 106156 29 100.0 32 ............................. ACGCTGAAGTCCGCACTCCGGCGGCTCAAGAA 106217 28 96.6 31 ........-.................... GACTACGGCCTCCCGACGAACCGGAGTCGGA 106276 29 100.0 32 ............................. GGGGGTGTCCCCGATGCCGGGGTGTTCGTACT 106337 29 100.0 32 ............................. TCGGCCTTGAGCCGCCTCCAGGGCCGCCCGCT 106398 29 100.0 32 ............................. GCCGGCTTGAGCTGCTGTGCGAGCTCGGCCGC 106459 29 100.0 32 ............................. TCGGCGAGGTCGCGATCGTCGTGGGCCAGGCC 106520 29 100.0 32 ............................. GACATGGCCGCACTGGACATGCAGACAGGCAA 106581 29 86.2 13 ......................CACA... TCCCGGCCCGCTT Deletion [106623] 106623 28 96.6 32 .................-........... GGGACGTGGACGTGGCAGGCGGACCGCGAGGC 106683 28 93.1 31 .....-...................C... GGATCTGGACGTTCGACGAGAACGGCTCGGT 106742 29 96.6 32 .........................C... TGGACCTGCCGGGACGTGTAGTAGTCGGGGCC 106803 28 93.1 30 .....-...................C... CGACCGACCCCAGCAAGTTTCCCGCCCCGA 106861 28 93.1 32 .................-.......C... CGGGGTCCCCGGGGTCACCTTCCCCTCGTCGA 106921 29 93.1 33 ........T................C... CGGTTCACCGTCCGCGAGACCCCCCCCGAGGAG 106983 29 96.6 32 .........................C... TCGACGTACGAGCAGGTGGCGAGCTTGGGGTT 107044 29 93.1 32 .....................C...C... GAAGTCGAGGCCAGCCGCCCTGGCGGTGCGTA 107105 29 100.0 32 ............................. TACAAGTTCCGGGGCATCGACGACGCCATGTC 107166 29 93.1 32 ..A.......................T.. GGACCGAGCGGCAGGAAGCAGGTGGAGGACGC A [107168] 107228 29 86.2 0 .............C........AAC.... | G,C [107245,107251] ========== ====== ====== ====== ============================= ================================= ================== 31 29 96.7 31 CTGCTCCCCGCGCACGCGGGGATGGTCCC # Left flank : TTGCCGATGTCGTGCACGCAGGCCAGCCACACAACGAGACGACGTGCGTCGTTCGCTCCCTCCGGCAGCTCGGCGGCTATCAGCCTCCGGACCGAAAGCGGCAGCCACTCGTCCCATAACCGTCCTGCTACCGCGGCACTGTCCTCCATGTGCCGCCACAGCGGCAGCCACCCATCGGAGTCCCGATCGTGCTTGGCCCACACCTTGAGCACGGGGCCGCGCAGTCTTGCGCGCATGCCGGTGTGGGAACCCCCCTCGACTGTCATGCCAGATGAATATCTGGAGGGGACATGAACGCGCAGCCAAATGATGAAACAGCGGAGAATGTGTGCTTGTTATGGCTGTTATAGCTCCGGCTGGGGCTGGTGCTCAGTAGAGTCGATCAGTTGGGTGCTGGTGACACCTCAGGCGGCGTGATGGGTGAAATGAGTTTTATGTCTGTTTCTTTGAAAGTACTCAGAACTGAGTCCCTGCGGCGATAAAGCCGCAGGTCGCGCAGT # Right flank : CACGCCCGTGCCGGTCTATCCGGATTCGGCCATATTCCAGCGAGCAAGTGGAGCTTCCGTGGAACCAAGGCCACAGCACCTGACGCGCCACTAGATTTTGCTGATTGCGCCAGGGGGTGCAGCAAGTGCCGGCTAGTGCAGAGGAGGTCGGATGCTTTCGGGGGCCGAGGGCGCGCTGTACGGTGCCGGCGGCGGGCTGGTGGTCGAGGCTGTCGTGACCTTCGGGCGGCTGCACGCCTGGCAGCAGGCGCGGCATGTGGCGCGGGTGGCTGGCGATGTCCTTCCCAAGCTCGGTGCGTATATCGATCCGCCCGCTGATTCGCTCGCTGCGCTGTTCCGGGTGGTGCTGGGCTGTGCTGCGGGGTGGTTGCTCCACGGGGAGTTGGGCGGGATGCTCGCGGCCGTCGCGGTGGGAGCTTCTGCGCCTGCGGTGCTGGCACAGATGGGCAGTGCTACGACTGTCACCGAGGCGCTGCAGTTGGGCACCACGCCCGGTGCGG # Questionable array : NO Score: 5.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:-0.04, 8:1, 9:0.73, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-26] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 172193-170761 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP038146.1 Streptomyces sp. S501 plasmid unnamed, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 172192 28 79.3 26 ......C.T.......TC...-...A... ACGCGCCCTACCGGAAGCGGTAGCGG 172138 29 86.2 32 .C.......A...A...........A... ATGTGGTGGGCGTCGCGCAGGTAGCGGCCGGT 172077 28 89.7 32 .............A....A......-... TACGACTCCTACCAGACGCTGCTGGTGCCCCC 172017 29 82.8 34 .C.......A........A.A....A... CCGATGCCCCGGTGCTGAGGGATGGGTGGCATTG 171954 29 89.7 32 .........A.............A.A... CTGGCCGAGCAGCGCCGACAGGAGAGAGTTGA 171893 29 89.7 32 A....T...................A... TTGTGGATCTCGTCCACGAACAGGTAGTCGAT 171832 29 96.6 32 .........................A... AGCTACGAGCGCGGTGTGCACAAGGGTGAGCG 171771 29 86.2 32 ............T.G........A.C... TAGTCAAGCTGCACGTCAGTCTCGTGGGGCGT 171710 29 93.1 32 .................A.G......... ACGTGGATCCACTTGCCAGTCGTCCGGTGCCG 171649 29 96.6 32 ..................A.......... GCGTTCAAGACCCCTGCCCTGCGGCATTTGCC 171588 29 96.6 32 ............G................ ACTCAGCCCGGTCGGGTCCTGCTGCGGGGCCA 171527 29 100.0 32 ............................. GAGAGAGCGTCGAGGGTGTCGAGCTCGTCGAC 171466 29 100.0 32 ............................. CCAGTCGTCGAGCCAGTCCGACATGAGGGTGG 171405 29 100.0 32 ............................. TCCACCCCATCCGGCCGGTCGTGGCCGAGTCC 171344 29 100.0 32 ............................. TTCACCGCCCCGTACCGCCCGGCCGACGACGA 171283 29 100.0 32 ............................. ATGATGTCGGCTTCAAGGGGGCCGTCGAGGGG 171222 29 100.0 38 ............................. TCGCTCGGCTGGGGCGTCGGGGCGACCGGCCGGGTTCT 171155 29 93.1 32 .......T.......A............. CTGCAGCAGCTCAGCACGACGGTCGCCGCCGA 171094 29 100.0 32 ............................. CGGTACGCGGACGTCCTGGACCTCCTGGACGA 171033 29 100.0 32 ............................. GCGAGCGCAGCCCAAGCCGCCGCCATTGCTGC 170972 29 100.0 32 ............................. GCCAACCGCGCCTGACCGAAGGACGCAATGCT 170911 29 100.0 32 ............................. CGTCTCGCCTACGAGTACGTTGCCGCCAAAAG 170850 29 100.0 32 ............................. TCCAACGAGTCCGGCATCCACCTGCTGCTCAC 170789 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 24 29 95.0 32 GTCCTCTCCGCGCGAGCGGAGGTGAGCCG # Left flank : GCTCAATGTGCGCTCTGGAGAAACAATGTCCCGGTTCCTGCGGAAGTTCGTCCTGCGACGCGAAGTCCTCCTCGAGGTCTCACGCGTGATGATCAGCGCGCTACTCCGCGCCCTGATCAACGAACTCGTCAGCTGGCTCTTCTGAGCCAACGGTGACGGATCTCAGGGGTCCGTCACCTCCTACACAATGGCGAGGCCCCGCAGACTGACTGCTCACCGCATCCGATCCATCCGCATTTCAGCTAAATCCTTCTTGAGTCTTTCATGCCGCCAGGGGGTGCAAGCCTGTGTTCCAGGATGAACTGCGAAGCGCGTTGTCTCTAGCGTCCGTTCCTTGAAATGTGCAGAGCGTTACCGTGTCCCACGCGCAGTCGGGCGTGAGCCGGCACTCACCGCCCTCAGCTAAAAGCCTCTCCGCTCGCGCGGAAAGGCACGGAAGGAACCTCCCTGTGTGAGCGGAGTTACCCGTCACGGGAGGCTTGGACAGCGTCGACGTGGCC # Right flank : TTGATCGCCTGACGGCGCTCGCCTCTGTCTGGCCACCTGACCGGGCAGGGGCGCTTTCGTTATGTCCCGATACCCTTTTCGGCATGATTCGAGCAGTGATCTTCGATGTCGGTGAAACCCTCACCCGCGATGACCGTTACTGGGCGTCCTGGGCCGACTGGCTCGACGTCCCCCGACACACCGTGTCCGCGCTCGTCGGCGCAGTCGTCGCCCAGGGCCGCGACAACGCCGACGCGCTGCGACTTCTGCGACCCGGCATCGATGTCGCCGCCGAGTACGCGGCACGCGAGGCGGCCAGCCGCGGCGAGCACCTCGACGAGAGCGATCTCTACCCGGACGTGCGCCCCGCCCTGACGGAGCTGCGCAGCTGCGGGCTGCGCGTCGTCATCGCCGGGAACCAGACCGCCCGCGCGGGCCAGTTGCTGCGCGCCCTTGACCTTCCGGCCGACGTGATCGGGACTTCTGGTGAGTGGGGCGTGGCCAAACCAGACCCCGAGTTC # Questionable array : NO Score: 5.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.00, 8:1, 9:0.78, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCTCCGCGCGAGCGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCTCCGCGCGAGCGGAGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.10,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-31] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 180855-181983 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP038146.1 Streptomyces sp. S501 plasmid unnamed, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 180855 30 86.7 31 .............AT..A...........T CGCCGGTAGCTGTGGGTCTCCTGGGGTGCGG 180916 30 90.0 31 ......C..............A.....T.. CGAAGATCACCAGGAATGCAGCGACGGCCAG 180977 30 96.7 31 .............................T CGAAGGGGGGTCGGCGCTGCACCGCGTCGCA 181038 30 96.7 31 .............................A TGAAGAGCAGGTGTCGGATGTACGAGCCGAC 181099 30 100.0 31 .............................. AGCGATTCGAGGGGGAGGGAGAATACCAGGC 181160 30 100.0 31 .............................. CCGGCACACTCCGCGTCCGCCTCCACCGAGG 181221 30 100.0 31 .............................. CGGTGCAGATGATGATGGCAAGGATGGGCTT 181282 30 96.7 31 .............................G CGAGCGGCGCGGAGGAGGCGGGCGGGGATGT 181343 30 96.7 31 ..........T................... TCGACCACCAGGTCGGCCAGCACATGACCGG 181404 30 100.0 31 .............................. GGCCCACGGACCCGCCCCGGCGTGCACCGCG 181465 30 96.7 31 .............................A CGACGCGAGCCTCCGACGGCGACTCGACCGC 181526 30 100.0 31 .............................. CGGGCAGCATGGCGCGCTGGAGGTCCTTGCC 181587 30 96.7 31 .............................G AGTCAGAGCAATGCCTGAGCTGGACCGGACC 181648 30 100.0 31 .............................. CGGGCAGCATGGCGCGCTGGAGGTCCTTGCC 181709 30 96.7 31 .............................G AGTCAGAGCAATGCCTGAGCTGGACCGGACC 181770 30 96.7 32 .............................A CCACCTACGTCCGCGACCGTTGCCCAGCCCGG 181832 30 100.0 31 .............................. ACGGTGGACCAGCTCGTACACCTGTCGGTCC 181893 30 93.3 31 ................T............T GGCCTCCCATATCCAGGCCGTACCGCTTGGT 181954 30 90.0 0 ........................GC.G.. | ========== ====== ====== ====== ============================== ================================ ================== 19 30 96.5 31 GTGCTCTCCGCGCGAGCGGAGGTGAACCGC # Left flank : AACCTGCACAAGGGGATGGTCGTAAACTACCGCTGTGTGGCCAGCCCCGTGCGCAAGCCGGGAGCCACCGCTCGGGAAGCCTATGGGCTTCCGCCAGTCGTGGCCTTGAGCGGCAATGCCGCAGTTGAATGGTGGGAACGACAGTCCAACGCAGGTGGGCTAGAACCGTTGAACATCAACGCCCACCCCCTCGCCACGGTAGGCGGTCTTCGAGGTTCGCGGGGATCCGCCGCACAGCAGCGCATAAAACATGCGCGCACACAATTCGATGGGACAGCCCGAGTGCTGGACGCCGAGCTGCTTCGCGAGACGCTCGCTGCGGGCATCGGGCGGGGCAAATCATACGGATGTGGGCTTCTCAGCCTCGCTCCCGCTCGATGAGTTCATCCGCGTGCCCGAACGTTGTGTTGCCGCGCTCAAAGCTGCGATGCTCCCGCGCGGCGGGGACGGGCGCCGCGCGTGCGGAGGTGAGTCTGGCGCCTTAGTGCCGTCGAGACCAC # Right flank : CCGGGCTGCCGAGGCCCGGGGCGGCGGCAGCCCGGCCGGCCACCTCCGCAGTCGTGCGACGTCGACGCGGCTGCGGTTGAGCCCGCCGTACAACGCGCCTTGCTTACGCCGGTGTTCAGGCGCGAGCGCGAGATCAACCAGGGTCTTCACGGGCCCGTCGGAGCACAGCAGCGCGTCGCAGAGTTCGAACAGTTCGTCGCCCCGTCTGGTCAGGCACGCATACAACTCCGACCGGAAGTGTGACGCTTTTGGAATCGGTCCAGATACACACGTCAGCTGTCCGGCCAGCGTGCGGCGAGAGTGGACTTGCCGCAGCCAGGCGGCCCGACCAGGACGCACAAGGCGTCGGCCGGGAGGTAGGGGGAGTTCATCAATCATCCCTTCGTTGGAGATTGGCAGCCCCTGCCGGTCCGGCTGGGGCTGCCCCTGCTTACGGAGTCCGAGGCACGTCCAGCGCCGGTATCGGTGGCCTCACGGGTCCATCGGACGTGGCCGATAGC # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.55, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGCGAGCGGAGGTGAACCGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTCCGCGCGAGCGGAGGTGAACCGG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.70,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [25.0-15.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //