Array 1 218-4027 **** Predicted by CRISPRDetect 2.4 *** >NZ_MLXO01000002.1 Salmonella enterica subsp. diarizonae serovar 59:[k]:z35 strain CFSAN044910 CFSAN044910_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 218 29 100.0 32 ............................. GCAACGTGGAGGCATGGCGCATTAAGTACCCG 279 29 100.0 32 ............................. TCACTCGCCACAATGGGTATGGGCGATCAGCA 340 29 100.0 32 ............................. GTGCTTATTAGCATCAGCATGAAATGCGTTAA 401 29 100.0 32 ............................. CGTCTACCGGACTGATTATTCAGTGGGGGATA 462 29 100.0 32 ............................. AAAACTCCGCCCGGATTCGCAAGGCGGGCAAA 523 29 100.0 32 ............................. GGCATTCGCCAGTACAACGCCGTATTTGACTG 584 29 100.0 32 ............................. GCTACATTTGTCTCCATATACTCATCCAAAAC 645 29 100.0 32 ............................. CTCAGCCCCGCATTACCGGATTTGTCCGGAGC 706 29 100.0 32 ............................. CTCACTTTCATCATTACTTAGCGTCGACATAG 767 29 100.0 32 ............................. ATTTAATTCTACGGGGGCTTGTTACTGGCCAT 828 29 100.0 32 ............................. GTGGCCGGGGTCAACCGCGACGATCTGCTGGC 889 29 100.0 32 ............................. TATCCAGACTGTCCTGGCGGTTATAACGAAAA 950 29 100.0 32 ............................. ACGTTATCCAGTTGTTCTTCAGGGATACCATC 1011 29 100.0 32 ............................. TGTCCAAACTGGAGCTGGCGCTCAGCGTGGAG 1072 29 100.0 32 ............................. CAGTCATCTGGAATCCTGATCCCCGCGACGCA 1133 29 100.0 32 ............................. GTCATTATCAATTTCATTTGTTTCGAACATCC 1194 29 100.0 32 ............................. TCGTTTTCCTCAATCAGTGGATTAGTAAAAGG 1255 29 100.0 32 ............................. CCGCCGGAGCTGCTGGCCCCGACGCTGCCGTC 1316 29 100.0 32 ............................. GATGCCGTGGGTCATGGCTTCAGTGCTCAGGA 1377 29 100.0 32 ............................. ATTTTTCATTGTCGCGGGTTCCGCTTCGCAGC 1438 29 100.0 32 ............................. GTTCATGGCTTTTTCGTGGGGATTATAGCGAA 1499 29 100.0 32 ............................. GCTGATGGTTCTGGTCGTTACGTGAAAATTTT 1560 29 100.0 32 ............................. CGAATTGCAGGACGAAATTACAGAACGGGTTA 1621 29 100.0 32 ............................. CCAAAAAGCCGGAAGCAACTGTATCGTACATA 1682 29 100.0 32 ............................. GACGGCTATTTACGCCAGAAGTTGGCATACAT 1743 29 100.0 32 ............................. GGTATAAATATAATTGAGATTCTTTCTGTATC 1804 29 100.0 32 ............................. CAATCTCCGCTGGTAACATGCGGTAAGACTGC 1865 29 100.0 32 ............................. CGAGCAGAAGACGTTGAGCCTGGTGATGTTGT 1926 29 100.0 32 ............................. GCGTACGGTGGTCAGCGCATGGCGATTCTGAT 1987 29 100.0 32 ............................. GCAGGGAAAAGATGAGGCAGCCACAATCACAA 2048 29 100.0 32 ............................. CGAGGGCGACGGATATCAAGCTGCTGAACACA 2109 29 100.0 32 ............................. AGATGATGGAACGTTGGCAACGTTATTATAAT 2170 29 100.0 32 ............................. CATGCATAAACTTTTAAATTCAGGGGAGAATT 2231 29 100.0 32 ............................. ACACAAGCGATGGTTGTTCAGGGGTTTAAAAT 2292 29 100.0 32 ............................. TTTCTTGATGCGGTGAACTTTGTTGAGGGTAA 2353 29 100.0 32 ............................. GATGCTGCCCCCTGAGCTATGGAAGCCAGAAA 2414 29 100.0 32 ............................. TTGAATCGGCGGCGGCGATAATGGCATCGCGC 2475 29 100.0 32 ............................. TTATTCCAGGCGGTATTCCGGGTGTTTGTCGT 2536 29 100.0 32 ............................. GTGCGCGGGTTTTTTTTGGTCTGGCAGTGGAG 2597 29 100.0 32 ............................. CGCTGATTGCCCGCGCCGACCCGCAGGCATTC 2658 29 100.0 32 ............................. GTGACGGGACAGCCTCACCGGAACTGCTTAAC 2719 29 100.0 32 ............................. CGATGCATATAAGAACCGCCGGGTTGATTTCA 2780 29 100.0 32 ............................. TATTCCAGTTCGTTCGCGCTCTTTAATTGAGG 2841 29 100.0 32 ............................. ACAAGGACACCGGCGAGCGCTCGCCGCTGATC 2902 29 100.0 32 ............................. CGGAAATCAACCTGGGTACTGCCATCATGAAC 2963 29 100.0 32 ............................. GATAACGAGGAGAAAAAGAAGACCAGGAATAA 3024 29 100.0 32 ............................. ATTCATCAGACACCTCGACGCAATAAACGTGA 3085 29 100.0 32 ............................. GCGCTTATTCTGGCAATGGTTGGTCTGCGTAA 3146 29 100.0 32 ............................. GGCAACGACATAGAAGCCTTTATAAAGTCCGT 3207 29 96.6 32 ............................C AGTAACGTTTAATATTTAAATACATGGCTAGC 3268 29 100.0 31 ............................. CGTTTTTTTGACTAGTTGGTGTCTAGGTACT 3328 29 100.0 32 ............................. ATTGAAATAAAGCCCTCACAAGTAACGTTTGA 3389 29 100.0 32 ............................. GTTTTCATCCCGGCACCACGTTTTCAGGTGTA 3450 29 100.0 32 ............................. CCACGCAAATCAAAACTGGAACAGGCTAAAAA 3511 29 100.0 32 ............................. ATATCGTCCAGACCGTACCCCACGGCCATTTC 3572 29 100.0 32 ............................. GAGTTCGGCGAGCGGATAACGGTCAGGGTTGA 3633 29 100.0 32 ............................. CATGAAAAATCAAATTTCAGGTCATCCAGTTC 3694 29 100.0 32 ............................. CATGACAATCGAAGGCGGTAGAACGAAGAAGG 3755 29 100.0 32 ............................. GGTGTTTCGCTGAACGTTTCCAGATCAGCATA 3816 29 100.0 32 ............................. AGGCATTAACTATGTCAGTAGCAGAGTCTAAA 3877 29 100.0 32 ............................. GGCCGTTCATCCACGAGGTGTCAGGGGCGTTT 3938 29 96.6 32 ............T................ ATGTAAATATGCGTACGTGCATATAGCACCGG 3999 29 93.1 0 ........T...T................ | ========== ====== ====== ====== ============================= ================================ ================== 63 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GGCCTGGGCAACAAATACGGAGTCAGGTTTTGAGTTCCAGACCTGGGGGGAGAACCGCCGTATTCCGGTAGATTTGGATGGACTCAGATTAGTTTCTTTTCTTCCCGTTGAAAATCAATGAGTTGAATGTTCTTTAATAATAAGAAATTGTTATCTTAATGTTGGTGGATTGTTGGGTGGCAAAAAAGACTTTCTGGAACAAATATATAGATTTAGTG # Right flank : GCTTTGTAAAAATCTTATGACGGTTTCAAATGGCATCCCTGTGCAAATGAGTCCCGTAAAAGTTACCGTGGAGCTGCTTGCTGATAACCTGCGACACAGCCTTCTGGGCCCGGCTTTTTTTACTGTTCCTCAGTTGCTGACGGAATATACCGGAAGCACGGTTTTTGCCGGGAAGTCACTGACGGTTGATGGTTGTCTCACAGCAGTCCGTCCGGGAAGTTCGCTGCAGTGTCTGGATAAATCAGCCTGAAGGGCCGGAGACAGAGTTATACAGCCTACATCCCAATAGTGTGACGACAGGACGTTTCCCCGGCAGTCATGCAGTCCCCTGCGGATTGTCCGTAGGGGGGAGTGATTATCGTTACCTGGAGAACATGGACGAATCTGACCTTTATATACTGTCGGAGGATGAACTGGATTATTTTAACTCATCGGCAGACCACCGTCTGGCTGAGCTGACGATGAACCGTCTGTATGACAAAGTGCCGGCCAGCGTGTGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 238378-236641 **** Predicted by CRISPRDetect 2.4 *** >NZ_MLXO01000006.1 Salmonella enterica subsp. diarizonae serovar 59:[k]:z35 strain CFSAN044910 CFSAN044910_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 238377 29 100.0 32 ............................. GTCGGTGTCAAAGAAATACTGACCGTCAAAAC 238316 29 100.0 32 ............................. TTGATCTTCTGCTCTTTCCATATCGTCTAGCG 238255 29 100.0 32 ............................. GTGATGTGATACTCCGGCAGCGTGTGCCAGCG 238194 29 100.0 32 ............................. CAAACGGACAGCTTGCACGATGGGCACAACAG 238133 29 100.0 32 ............................. CCACGCTGATTGAAGCCGTGACTATCCAGCTA 238072 29 100.0 32 ............................. CAGTAAATATAAAAATGAACTGCCCCCGGATT 238011 29 100.0 32 ............................. ACGCCACGGCACGCCAGAACTACACCGCCGCC 237950 29 100.0 32 ............................. AGCCTGTGCCAGGTGACAAGCTCTACGCTGCC 237889 29 100.0 32 ............................. AGCTTCAGTGCATCGGCAATCATCGCCAGTAC 237828 29 100.0 32 ............................. AATAGTATGCAGATTGTCATTTCGCCCGTCAG 237767 29 100.0 32 ............................. GCTGTTTTTTCTTTCAAATACTGCAAATTAAT 237706 29 100.0 32 ............................. GTTAGTGTGTCCGGGCGCTTCAGATGGACTGT 237645 29 100.0 32 ............................. TTCGCAAAAGAGGCTGATGAGCGTTATGTCGC 237584 29 100.0 32 ............................. GATGTACTGGTGGGAATACCTGAGGATAAGGC 237523 29 100.0 32 ............................. CCTTTATGCAAACAGAAAGGGATTTAATTTAC 237462 29 100.0 32 ............................. GTGAGATTACTATTTTCAAAGGTGATTCTTAT 237401 29 100.0 32 ............................. GCCCCCGTTCCGGCCTCCGGCTCCAGTATCCG 237340 29 100.0 32 ............................. GCAAATCCACTCGGAAGAATAAAAGTCACCAA 237279 29 100.0 32 ............................. CGCTGGTTTCGTTCCGGTTCCCGCTACCTGTT 237218 29 100.0 32 ............................. GCTTCAATAACATCGTCAGCCTTGAGATATTC 237157 29 96.6 32 ............T................ CCGTTCTTCTTCCGGTATGGCGTCCAGACGCG 237096 29 100.0 32 ............................. GTGAAACACGGCATCACGCTTTCAGGCAGTGA 237035 29 100.0 32 ............................. GTGAAACACGGCATCACGCTTTCAGGCAGTGA 236974 29 96.6 32 ....................A........ GCCAACAACATTGAGCCAGCTATCTCGGCGCA 236913 29 100.0 32 ............................. TTATTTCTTCGTCTGTTAGTTTGTTATTTTTC 236852 29 100.0 32 ............................. ATGATTTTCTCCTCAATTACCCGCTATAATAC 236791 29 96.6 32 .............T............... TTTGCGCTCGCTGACGTCAACAGCTTCTACGC 236730 29 96.6 32 ............T................ CTGCCGGTCAGGCTGCTGAAGTTACTGTGGTC 236669 29 86.2 0 ............T............G.TA | ========== ====== ====== ====== ============================= ================================ ================== 29 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GGCCTGGGCAACAAATACGGAGTCAGGTTTTGAGTTCCAGACCTGGGGGGAGAACCGCCGTATTCCGGTAGATTTGGATGGACTCAGATTAGTTTCTTTTCTTCCCGTTGAAAATCAATGAGTTGAACGTTCTTTAATAATAAGAAATTGTTATCTTAATGTTGGTGGATTGTTGGGTGGCAAAAAAGGCTTTCTGGAACAAATATATAGATTTAG # Right flank : TTTTTACCAGCAGATCAGGATGTCTTTTCCGTCTTCGCCAGCTCTTTTACTAGCGGCAGCATTATCCGTACTACGTCGCGACTACGGCGCTCAATTCGTCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAAGCATTTTTCGCGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTTGTCGCCTCAACGGAAAGCACAGAAATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGACGGATTGAGCCCCGGATTGGTGCTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGATTATCGAAATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //