Array 1 42804-44596 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMKZ01000026.1 Caldalkalibacillus thermarum strain CGMCC 1.4242 sequence026, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 42804 30 100.0 38 .............................. GACTGACCTCCTAACGCCTGGTCAACCAAATGAGCAGC 42872 30 100.0 38 .............................. GTATTATACCATGGTAGCAACTTGGTAGCAAGTGTTTT 42940 30 100.0 38 .............................. TCAAGCCAATCTGAAAGAGCCACCACAACTTTTGTCAT 43008 30 100.0 39 .............................. TCAAGCCAATCTGAAAGAGCCACCACAACTTTTGTCATG 43077 30 100.0 37 .............................. GGCGCTATTTTGTCCAGTTCAACTTTGATATTGAAGT 43144 30 100.0 37 .............................. ATCGCAAGCTCTATGACATCATTTGACGTAACCTTTC 43211 30 100.0 37 .............................. CTGGGCACATGTAACGCCCAATCAATTACGTGAGCAA 43278 30 100.0 39 .............................. TCCTTTTCGTTTAATTTATTAAGTCCATTATTTATCTTT 43347 30 100.0 36 .............................. TGATATAGACGTTATGAATAATAAAGTGTGGGTAAA 43413 30 100.0 38 .............................. GCGCTTGTAGACGTAAAAGAACAAGGCGGTTTCCGTGG 43481 30 100.0 39 .............................. TCCTACTTGACGGTTGACCAAAGTATATTGTATTTCCCC 43550 30 100.0 39 .............................. CGCGAAAAACACAACTTATCACAGTTAGCGTTAGCAAAA 43619 30 100.0 38 .............................. CAACAAATCACATCTCTTCTGCAGGTTTGGATGCAGGG 43687 30 100.0 36 .............................. CAATACTCGAGAGCGTACCAGGTTCCACAAACAGAC 43753 30 100.0 36 .............................. CAATACTCGAGAGCGTACCAGGTTCCACAAACAGAC 43819 30 100.0 38 .............................. CTATATAATTGAACCCAACGGAAAGTTGGGAAAACAAA 43887 30 100.0 39 .............................. ATAACGTTATCCAGTTGATTGCGGCCAGCGAAAAAAATG 43956 30 96.7 36 .C............................ GATTCCCCTGGGTCATTCCGTTTCCCCTGGGGAACT 44022 30 100.0 38 .............................. ATTTTTTTATGCAATTCATCTGCTTAAATGTGAATAAA 44090 30 100.0 38 .............................. CACGGATAGACCTGGCTTGTGACGATTTGAAGGGATAT 44158 30 100.0 40 .............................. TTATTCAACTCCTCCGCCACCTTGTGTTGGTTTCTGGATA 44228 30 100.0 38 .............................. TTGAGTTTGTGATGCCGGCTGTTTTGTTCATCATCAAA 44296 30 100.0 39 .............................. AATCAATTATGAAAGGTCGTACTGCGCAAGTGACCGTTC 44365 30 100.0 37 .............................. TATTGACTGCTATGAAGCCCGCGATAGGTCATGCCTG 44432 30 100.0 39 .............................. TTTTACTGACGATTGATTCTCCCATCTCTTCTGTGATAG 44501 30 100.0 36 .............................. TCGCCAGAAATTCATTGCTACTGCTGTAGGTGAAAC 44567 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 27 30 99.9 38 GTTTGGATCTTAACTATGAGGGATTGAAAC # Left flank : ACTATTTTCATCCTGATAACCGTATGTTTGCCCAGCAGGTGGAAGATAATCTGTTAAGGAAGTATGAGGCTTTCTACGGTCAACCAGCAAGCGAACGCTTTTTGATCCGTCCTGTCCGCATCCGTCCCATAGACAAGGTGGTGACCCGGTTTAAAGGTACGATTATCAATGCTTGGTCTGGCATCTACGAAGTACAATCCTCCCCTGAATTGATCAGTTTTGCCTATAAAGCAGGATTAGGAGCGAAAACATCACAAGGTTTCGGTATGTTTGAATTCATCTGAATTCAGAACATGAGAAAACATGATTTTCATCAGACTGTCTTGTCGTCGATCCTTAATAGCGCAAAATTCCCGGGGGATCGACGACACAGAATATTCTGATAAATAAACTCCAAACCATTGCAGGTCAAAGAATGTATATGTTTTTAGAAATATTTTGAGTCCATACAGGAATTTTAGAGTAAAATGTCGTATATTTATATATCAGCATTTTTTGGG # Right flank : TTTGGTCTCAGGAAATGAGCCGTACACAGCTGTTGACCGTTTGGATCTCGGATTAACCCCCTAAATTTGGACATAATCACAACTTTTTAAGTTATTTCTCAAAAATGCTCTTTGTTTCGTCTTTTTGTAGTATAGCCTGTCCGTCCATTTCATCAAGGGTAAAGGCTTACGCCC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGGATCTTAACTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.40,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 1 120-489 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMKZ01000036.1 Caldalkalibacillus thermarum strain CGMCC 1.4242 sequence036, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 120 30 90.0 40 TA.A.......................... CATGGGAACAGATCGAACAAGCATACCTGGAGAAAAACAA 190 30 100.0 36 .............................. CCGAGCAACGACGTTCGGGCGTAAATATTCCCGAAA 256 30 100.0 37 .............................. TGTGATAGATGAATGGCGGCACGATGCCAAAGAAGCA 323 30 100.0 39 .............................. TGCAACGGCTGATTTTCTTCTTTTCCAAAGGTAAAAGTC 392 30 100.0 38 .............................. CTCAAACGGTATCACAGGCAACTTGAGATGCAAAATGC 460 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 6 30 98.3 38 GTTTGGATCTTAACTATGAGGGATTGAAAC # Left flank : ACAACTTGTATTTTAAATTCAACAGAATGTCTTTGGCGTTTCATATTCATCAGCCCCCTAATTTTATAGTTAATAGTTTAATAGATCACACCTTAGTTGTCCAAATTCATTAGGGGGCTT # Right flank : CTACACCCTCAACTCACTGATTGACTGGTGCTAGTATAGTTTCATGGACACATTTTTAGTTAAGTCCCTTACAATAAAAATTGGGAGAGGATGTGTCCAATATGAACCGTAAGAAATTCAATGACGACTTTAAAAAAATGATTGTGGATCTCTACCATTCAGGAACTTCTGTTAAAGATCTGTCCGGCGAATATGGTGTATCTGAAGTGACGGTTTACAGATGGATTAAGCAGTTTACTCCAGTGGGTTCTGGAGATGAGTCCATCACCCAGAAAGAGATGGTTGAGATGAAGCAGGAAATGCTCCGTCTCCAACAAGAGAATGAGATCTTAAAAAAGGCTATGGCCATATTCGCCAAAAAGTAAAGGATACTGAGTTAGCAGAATTCATTGACAATCATAAAGCAGATTATCCCGTTCATACCCTGTGTAAAGTGCTGGGGATTCCCCGAAGCACGTACTATCAAAGACTGAATCATAAAGAGTCAAACCGCGAACGTG # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGGATCTTAACTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.40,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : NA // Array 1 810-58 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMKZ01000054.1 Caldalkalibacillus thermarum strain CGMCC 1.4242 sequence054, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 809 37 100.0 35 ..................................... CTCGTTCACTCGCAGGTAGGTGATACGCTTGTCAT 737 37 100.0 33 ..................................... GAGCAAGCCCGCCATTTGCTCGCGCCCTTGAAA 667 37 100.0 35 ..................................... GCTTGAAAGCCAAGTCGCAGTGCTGTGGAAGGCAT 595 37 100.0 35 ..................................... CTCGTTCACTCGCAGGTAGGTGATACGCTTGTCAT 523 37 100.0 33 ..................................... GAGCAAGCCCGCCATTTGCTCGCGCCCTTGAAA 453 37 100.0 35 ..................................... GCTTGAAAGCCAAGTCGCAGTGCTGTGGAAGGCAT 381 37 100.0 36 ..................................... ATCCAACTGACGCTGCAGCTCAAACAACTCGGTTGC 308 37 100.0 34 ..................................... AGTAATGCATTATAATTTCTGCCATTATATACAA 237 37 100.0 35 ..................................... ATGCTGTCGATTCAAGCGGCGAATAATCGCCCGGG 165 37 100.0 34 ..................................... CAATCAATGATGATCCTTCCACCTGTTCCGACCT 94 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 11 37 100.0 35 GTTGCACCCAGCTAATAAGCTGGGTGAGGATTGAAAC # Left flank : GTTCCGCGAGGCTTTCCTCGGCTATGCGGTTGCACCCAGCTAATAAGCTGGGTGAGGATTGAAACTCAAGTCTGCGCTGGGATACTACTATACCGAGGAAGTTGCACCCAGCTAATAAGCTGGGTGAGGATTGAAACGTCTCTGTCTGTCGAAACACGCACATAGACAAGATAGTTGCACCCAGCTAATAAGCTGGGTGAGGATTGAAACCACGCTTCGCCGTCCCAACGGTATCCCAATTCACGTTGCACCCAGCTAATAAGCTGGGTGAGGATTGAAACAACGAGTTTGACAACATCTATGTCAGTGTCAGCGGCGTTGCACCCAGCTAATAAGCTGGGTGAGGATTGAAACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CAGTAAATCTACCCTTGTATTTTGTGCCCCCGTGTTAGTTGCACCCAGCTAATAAGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACCCAGCTAATAAGCTGGGTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-13.90,-13.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [53.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 2 1498-956 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMKZ01000054.1 Caldalkalibacillus thermarum strain CGMCC 1.4242 sequence054, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 1497 37 100.0 35 ..................................... TCAAGACGTGCGTATGATAGATCGTCAGATTAGAG 1425 37 100.0 35 ..................................... ATCCAGTCGATCATTTGTTTTGCTTCTTTTTTCTG 1353 37 100.0 35 ..................................... CATCGTTGTTCCGCGAGGCTTTCCTCGGCTATGCG 1281 37 100.0 35 ..................................... TCAAGTCTGCGCTGGGATACTACTATACCGAGGAA 1209 37 100.0 36 ..................................... GTCTCTGTCTGTCGAAACACGCACATAGACAAGATA 1136 37 100.0 34 ..................................... CACGCTTCGCCGTCCCAACGGTATCCCAATTCAC 1065 37 100.0 36 ..................................... AACGAGTTTGACAACATCTATGTCAGTGTCAGCGGC 992 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 8 37 100.0 35 GTTGCACCCAGCTAATAAGCTGGGTGAGGATTGAAAC # Left flank : GATGTTGAAACGCAGGAAACAAGTGGACAAAAAAGGCTGAGACAAGTGGCAACAATCTGTCAAAACTTTGGACAAAGAGTACAAAAATCAGTGTTTGAATGTAGAGTCACACAATCGCAGCTTGAAGAAATGGTGCACCAATTGTTACGAGTTATTGATAAGGAAAGAGATAGTTTGCGGATATACATGCTGTATGGGGATCGAAACAGGGTTGTCCGCGTCTATGGAAGAGATGACTACATTGATTATGATCATCCGATAATTGTGTAGTCGTAAATATTGCAGGAAAAATTTACGGGTGTATGAATGAATGTAATCAATGCGCGAACATGGTGCGCTGAGAGAAACAAGGGGGGTTCGCAAAAGTGCAGAATACCAGCAATCAAGCGGTGTATAGCGGATATCTCAGTTTAAATGTTAGCGATTTTATTAGTAGTAAATTGAGGTTCTCGTTTTTATCCCGTAGATCCCAGATGCAGTAAAAGGTTTAAGCGCGAGCG # Right flank : CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTGCACCCAGCTAATAAGCTGGGTGAGGATTGAAACCTCGTTCACTCGCAGGTAGGTGATACGCTTGTCATGTTGCACCCAGCTAATAAGCTGGGTGAGGATTGAAACGAGCAAGCCCGCCATTTGCTCGCGCCCTTGAAAGTTGCACCCAGCTAATAAGCTGGGTGAGGATTGAAACGCTTGAAAGCCAAGTCGCAGTGCTGTGGAAGGCATGTTGCACCCAGCTAATAAGCTGGGTGAGGATTGAAACCTCGTTCACTCGCAGGTAGGTGATACGCTTGTCATGTTGCACCCAGCTAATAAGCTGGGTGAGGATTGAAACGAGCAAGCCCGCCATTTGCTCGCGCCCTTGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACCCAGCTAATAAGCTGGGTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-13.90,-13.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : NA // Array 1 2411-2014 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMKZ01000092.1 Caldalkalibacillus thermarum strain CGMCC 1.4242 sequence092, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 2410 37 100.0 35 ..................................... AACTCTTCGTACGCAATCTCCTCACCATATTGATA 2338 37 100.0 34 ..................................... AGTAACACCAAAGGCATATTGTTTATGTTGTTGC 2267 37 100.0 36 ..................................... CAATCAGTTGCTGCTTATTAAAAAACTCAAGAAGCT 2194 37 100.0 34 ..................................... CGTATATTGCGTACAAATGAAGGTTTTTTGACTG 2123 37 100.0 36 ..................................... GTACAGTACGTCAAGCAGCGAATCCACATCGACTAC 2050 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 6 37 100.0 35 GTTGCACCCAGCTAATAAGCTGGGTGAGGATTGAAAC # Left flank : AGCTGGGTGAGGATTGAAACACGTATTCAAGCGCGTGGCCCACGTTGAGACGTCC # Right flank : ATCCCTCCCCTCTCAATACCAAAAGGAGAATGAATGGCTTTGCGAGAACTGGGAACATTAAAACCTTCTTGTTCCAGATAGTCTTTCATCGTTTTCTAGCCAAGCTCAAAAGTATATTCAAAAAATTGAATAAGCCCCTGTACTTCAAATTTGTTTAACTCACCTTTTGTAATAAATTCCGTTAATTGCTGAAAAGCTTTACGATAATTATCGTAACGTAGTTTCCAACGAATATCTTGCACATAAGATACGCCCCTTCCTTGACCGGTCAGGACTGCTTTTCTCAGGACTTGCCGTAGACCTTGCCATACCTATCTATTAGAAGCCGATAGGGGTGTCAGTCTGTTCTTTTTTCTTCTTTTCGGGATCAGCAGCTTCTTTATTTTTTGGCTATGGCTCAGTACAATCTATATTGTTATGGAATTGTGTAAAGAGAGGTTCACAAAGTCTGAGACAAAAGGTGATAGAAAATGATATATGTAGAAAATACACCTAACAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACCCAGCTAATAAGCTGGGTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-13.90,-13.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [55.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA //