Array 1 152779-155058 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLXJ010000003.1 Streptococcus thermophilus strain 159 NODE_3_length_161494_cov_108.138126, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 152779 36 100.0 30 .................................... CAGACGACGTGGCTTACCCATTCGTTGTAA 152845 36 100.0 30 .................................... TAGTCGTTCAGCAATTACTAGGATCAGAAA 152911 36 100.0 30 .................................... TAGAAGACCTTCAAGTTGGATTACCTTGCG 152977 36 100.0 30 .................................... TTTTACCCACCAAATCTAAAGCGTCTATAC 153043 36 100.0 30 .................................... TAATCCGGATCGCAACGTCATCCGCTATGC 153109 36 100.0 30 .................................... CACTAAAATCAACGATGTTTTAAGGCAAGG 153175 36 100.0 30 .................................... CTCTCCGTTGCGCGTTTTCAAAATCGGCAC 153241 36 100.0 30 .................................... TTTCAAGAGCCTGTTTGTTATAGTCAATAC 153307 36 100.0 30 .................................... TAGAGGTAATGACGGACTACCAGGTAAGGA 153373 36 100.0 30 .................................... TCCAAGAGGGAGCACGGTAAGTGTCTCAGA 153439 36 100.0 30 .................................... AGTTGTGACTTCGCTTTCGCTTGGCATCCA 153505 36 100.0 30 .................................... TTTCCAATGCCGTGATGGTTTTCGTCAGGA 153571 36 100.0 30 .................................... CAAGGTATACGGCATCCCTGATAACGTAGT 153637 36 100.0 30 .................................... ATTCCATTACAGTTGTTATGGTAAAAATGA 153703 36 100.0 30 .................................... TATCCCAGAGAATGGAAGAACAATTATAGA 153769 36 100.0 30 .................................... TGCTTGTGCTTTTGTAATTTTTGCTACTGT 153835 36 100.0 30 .................................... GCTATGATGACTTGCTCAGTATGTTTAGTT 153901 36 100.0 30 .................................... CTTTGAAGAAGTATTTCAAAGGCAATAAGA 153967 36 100.0 30 .................................... TACCTCCCTGGCAACTTGCCCTAAATAGTT 154033 36 100.0 30 .................................... GTCAAATACCATCTTGTTGTTCTCTATTTT 154099 36 100.0 30 .................................... CCAAGGGATTCAAGGACCACAAGGCCCTCA 154165 36 100.0 30 .................................... TCTTGATAAATAACCTCTAACGCTTCATTT 154231 36 100.0 30 .................................... CTCAATGGTTGAGGATTATCTTGAAAGTAA 154297 36 100.0 30 .................................... CATCACTGACATGGGCGATGGCGGCTACTA 154363 36 100.0 30 .................................... CGGGCTTAACATTCCACACAATATCCAAGA 154429 36 100.0 30 .................................... TACGGCTATTGGTTTTGTTTATCCATATGT 154495 36 100.0 30 .................................... TAGGACATCGTTTTGTGGAACGTGTTGTTT 154561 36 100.0 30 .................................... CTTCAATTGAATTGAGTATCTCGAGATAAG 154627 36 100.0 30 .................................... CATCACAGATACCGGAAACGGTGGTTATTA 154693 36 100.0 30 .................................... CATAGGTCATAATAACTTCATCGGTTGGAA 154759 36 100.0 30 .................................... ATAGTATTAATTTCATTGAAAAATAATTGT 154825 36 100.0 30 .................................... ATTCGCCAAAATCGCACCGTTAACACTCAA 154891 36 100.0 30 .................................... GCATTGACAGGCGATATCGTGTTGATGTCT 154957 36 100.0 30 .................................... TATGAATTGTCAAATTAACGGTTGCGCTAA 155023 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 35 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AATGATAAACCTGAAGTTAGATCAGAAATAGATTCTTTGGTATCATTAATTACTGATATTATAATGGCAGAGTGTATAGAAAATGAACTAGATATAGAGTATGATGAGATTACACTTTTAGAACTAATTAAAGCATTAGGTGTCAGAATCGAAACTAAGTCTTGTACGGTTTTTGAAAAAATATTTGAGATTTTACAGATTTTTAAATATTTAGTTAAAAAGAGAATTTTAGTATTTAGTAGTTTCTGTATGAAGTTGAATGGGATAATCATTTTGTTAGAGAGTAGATTATAAGGATTTGATAGAGGAGGAATTAAGTTGCTTGACATATGATTATTAAGAAATAATCTAATATGGTGACAGTCACATCTTGTCTAAAACGTTGATATATAAGGATTTTTAAGGTATAATAAATATAAAATTGGAATTATTTTGAAGCTGAAGTCATGCTGAGATTAATAGTGCGATTACGAAATCTGGTAGAAAAGATATCCTACGAG # Right flank : CTTTTGTTATCACAATTTTCGGTTGACATCTCTTAGAACTCATCTTATCATAAAGGAGTCTAGTATTAAAATATGAGAAGGAACATGTTATACGAATATCCAGCTATTTTTCACACGATTGAGGAAGCTTGCAGGATTAGTTTTCCCAATTTTGGTCGGATTATTCAGGTAGCTTCTTTATTTAATGTTATGACGAAATCGTCAGTATTTTTGGCTTATATTATTTATTATTATGTGGACCAGGTCTTGCCTGATTTGACGGCAGTAAGTAGTATTCCTAATGAGAAAGAGCTTGTGGTTTTGATTCAGTTAGAACTTGATTGACAGCAAAAAACTCTTGGAGGATAAATTTCCAAGAGTTTTAATTTTTATTAGCCACATAGACTCCAAGGACTACCAAGATTCCCGCTAAGATTTGTAACTGTGAGAAGGGCTCTTCTAAGAAGACTACAGCAGCTAGAATTGAGATAATCGTTGATATGCCAATGAAAGAAGCAGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 92691-90084 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLXJ010000001.1 Streptococcus thermophilus strain 159 NODE_1_length_217358_cov_107.205252, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 92690 36 100.0 30 .................................... TAGCTACACATGAATTTTATTACAATGGTG 92624 36 100.0 30 .................................... TATACACCTAAAAAAACATCTGTTGTTAAA 92558 36 100.0 30 .................................... CAAGTGGGATGAAATTAACGACGAATCCAA 92492 36 100.0 30 .................................... TTCCCGGCGTATATACTGGCTCGATTGTTT 92426 36 100.0 30 .................................... TGGCGTGTTCGCAGATATGTACTTCAATGA 92360 36 100.0 31 .................................... AAGCTGTGATAACACGAAGAGAACTCTAGAG 92293 36 100.0 30 .................................... GCTGGCGAGGAAACGAACAAGGCCTCAACA 92227 36 100.0 30 .................................... TTAACCAATTTTGTATAAGCGTCCATTTCA 92161 36 100.0 30 .................................... TGACCTGTTTCTCTTTATTAACTAGAATAG 92095 36 100.0 29 .................................... TCGGACTGATACGAACAGTATCGCCAGCC 92030 36 100.0 30 .................................... GCTAAAGATGACCTGTATATTGAATTGATC 91964 36 100.0 29 .................................... CGAATAACGAACGACGTCTAACAATCTTA 91899 36 100.0 30 .................................... GAACAAGACGGTATAAACTATCGAGATTTA 91833 36 100.0 30 .................................... GTGTATGCAAACAACTTGCCAAAAGAGCTC 91767 36 100.0 30 .................................... CCAATTATGGTTAATTGTGAGTTATTCACT 91701 36 100.0 30 .................................... GCTAGTATTGGTGATTTAACACCAGCGGAA 91635 36 100.0 30 .................................... ATCGACAAAGCAACAACACGCTTAGCATCG 91569 36 100.0 30 .................................... AGAAATTCATGGCTGAAAAACTTTGGCATA 91503 36 100.0 30 .................................... ATATATGTATTTAAGTACACAAAAGACCCT 91437 36 100.0 30 .................................... TGCAAACAAAACAGTGCGATCGCTTGCAAG 91371 36 100.0 30 .................................... AATTAAGGGCATAGAAAGGGAGACAACATG 91305 36 100.0 30 .................................... CGATATTTAAAATCATTTTCATAACTTCAT 91239 36 100.0 30 .................................... GCAGTATCAGCAAGCAAGCTGTTAGTTACT 91173 36 100.0 30 .................................... ATAAACTATGAAATTTTATAATTTTTAAGA 91107 36 100.0 30 .................................... AATAATTTATGGTATAGCTTAATATCATTG 91041 36 100.0 30 .................................... TGCATCGAGCACGTTCGAGTTTACCGTTTC 90975 36 100.0 30 .................................... TCTATATCGAGGTCAACTAACAATTATGCT 90909 36 100.0 30 .................................... AATCGTTCAAATTCTGTTTTAGGTACATTT 90843 36 100.0 30 .................................... GCTTAGCTGTCCAATCCACGAACGTGGATG 90777 36 100.0 30 .................................... CAGATAGCTGTTAAGTCGCCTGGCTGATAA 90711 36 100.0 30 .................................... CAACCAACGGTAACAGCTACTTTTTACAGT 90645 36 100.0 30 .................................... TGGAAACTAAGAAATGCAATAGAGTGGAAG 90579 36 100.0 30 .................................... AAATCTCGTAGTTAGTACAGTAGGTTTCAA 90513 36 100.0 29 .................................... TCATAGCGGATTCGAACCGCTATAAGCCC 90448 36 100.0 29 .................................... CATGATTTACAACCACGCGCTAGACCAAG 90383 36 100.0 30 .................................... AAGTAGTTGATGACCTCTACAATGGTTTAT 90317 36 100.0 30 .................................... ACCTAGAAGCATTTGAGCGTATATTGATTG 90251 36 100.0 30 .................................... AATTTTGCCCCTTCTTTGCCCCTTGACTAG 90185 36 100.0 30 .................................... ACCATTAGCAATCATTTGTGCCCATTGAGT 90119 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== =============================== ================== 40 36 99.9 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : TTGATGGATTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGTTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGCTGTTTCATTTTAGTTACCGTATAAGATATTCTCAGACACCTGATAAGGAACTATTACATAAATTTTTAGAAAGTAAGGATTGACAAGGACAGTTATTGATTTTATAATCACTATGTGGGTATAAAAACGTCAAAATTTCATTTGAG # Right flank : TTGATTCAACATAAAAAGCCAGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAATCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCATGGTCTGTGGATCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTGCCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCTAGCTCCTTGGTCATTTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCCGGCCTTAAGTACTGGGTAGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //