Array 1 124737-124966 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP079233.1 Bifidobacterium pseudocatenulatum strain YIT11953 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ============================ ================== 124737 24 100.0 27 ........................ TCCACGGTGCTTTTCCGGGTGTTTGTC 124788 24 100.0 27 ........................ TCCGGAGGTTCATTTTTGGTCTTTAAA 124839 24 87.5 27 ......A.....CA.......... CGCACGGCATCTATTTCAGTCTACGGA 124890 24 100.0 28 ........................ CTTAGGTGCTTATTTTGAGCCGCTTGTG 124942 24 83.3 0 C...........CA.......G.. | C [124965] ========== ====== ====== ====== ======================== ============================ ================== 5 24 94.2 28 TGTCCGTTTCTGGTGAATCGGACA # Left flank : GTATGGCGGTCGAGCAGGGCCGCGCGGATTTCTTCGCGGCTGACGAGCGTGGCCGGGTCGGGTTGGTTGTCGAAAGCGTGCTGGCGGGCGTCGATCTGCGCCTGCGATGCGGATGGTTCAAAAGTCATGGTTGTTCTCGTATTCTCGTTTTCCGTTCGTGCGTTGTTTTTGCCGGGTTGGTTGTGTTTTGTATGTTCTTGCGATTGTTACGCGTGCATTGCGCCGGTCGTAATCGTAAGAAACTTTGAAAGTGGTTCAGCCGCCCTGCACGAACGTGACGATTTCCAACGTATCGGTGCCCTTGAGCTGCGTCTGCGCACGCTGGGTGCGAGGCACGATCTCACCATTGAGCTCGACAGCCACGCGGTCGGCGCGCAGGCCCTTGCTTTCGATCAGTTCGGCCACGGTGATTGGCGTGGCGACGTTCTCTTCCTTACCGTTGATGATCATTGCGGTTCCCTTCTGTGTCTGTCGTGACACATGCTTTCCTGCACTCCGGA # Right flank : CTCAAGGTTGGTACGAAAAAAGGGTCGCCGAAGGAACCGTACCCTATGAGGTGGTGCGCCCCTCCGTGACCCTAATCACGCGATATTCGGTTATCGCGAACGGAAGATGAGATACGCCTTGCGGCGTGAACAACCCGTCTCCTTACGGCGGCATTACCCGCATCAAGTCCTCGGTCGAAGCTCCGTGAGCTCCCTCTCAGCCTTTCGGCTCCCGTTCGGTTGTGCCTTCATCTTCGCGCACGCGCCCGACAAGCTTGCGCCGGTTCACGTTGGGTTAGTCTTGAGATGAACGTGTACGAATCGGCTATGTTCTTGGAAGGAAGGGGAAGATGATGATGAACGGTGAGTTGGCAGGATTTACGATTCCTCGGCTTGGTATGGGAACGATGGCTTTGGCGATTGAGGGGCGTCCGGATCGCGATACCGCGATTCGTACGATTCATGCCGGTTTGGACGCGGGTGTCCGCTATTTGGACACGGCTTGGTCATATTATTTGCCG # Questionable array : NO Score: 2.66 # Score Detail : 1:0, 2:0, 3:0, 4:0.71, 5:0, 6:0.25, 7:-0.10, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTCCGTTTCTGGTGAATCGGACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 2 1591333-1588314 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP079233.1 Bifidobacterium pseudocatenulatum strain YIT11953 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 1591332 30 90.9 0 ..............................--- - Deletion [1591303] 1591302 33 100.0 35 ................................. ATCAAGTACATATCGTTGCGGTCGGACAGGATAGG 1591234 33 100.0 33 ................................. GGAGCGTGGAAGGTTGAAAAGCGGTTCGACGAC 1591168 33 100.0 33 ................................. GACAATCTGACGGGAGACGGCTTCGAACAGCCG 1591102 33 100.0 34 ................................. CAGCCAGAATCGAACAACATTACATTAATGCCGG 1591035 33 100.0 33 ................................. GAGATTCTCCGGCAGGACGGTTATCTCGGCAAG 1590969 33 100.0 32 ................................. TCCGTTATCAGAGTCACCGCCTGCATATTCCT 1590904 33 100.0 36 ................................. GGTCTTGGTGAGGTTGAAGTAGTATTGGCCGGTCAG 1590835 33 100.0 34 ................................. TTCTCGTTCGTCGGGGTAACGCCGGATGACATGT 1590768 33 100.0 36 ................................. CAAAGCTACAGCGATTACGAGCAGCTGAGCGGTGGC 1590699 33 100.0 35 ................................. TTTTGAGAGCTGTCCGATCTGCATGGAAAGCTGTC 1590631 33 100.0 34 ................................. ATCGTATCACGTCGGGTGAAACCGCTACTAGCCA 1590564 33 100.0 34 ................................. TTCACCGTGTACTGACCGCCGCCGGTTGCTGGAA 1590497 33 100.0 35 ................................. TCGTATGCGATGGCACAGCCGCCCACTTGCGCACA 1590429 33 100.0 34 ................................. TCGTATGAGGTTTGAGCGGTCTACTAATGATATT 1590362 33 100.0 34 ................................. GTGGCGAACGCTGGCAGTGGGACGCATACGCGCA 1590295 33 100.0 35 ................................. GTTAAGCGAACTTTTTGATACTATCATGGAACGAA 1590227 33 100.0 35 ................................. TTATGCGATTGACTTTGTCCATGAAATCACCGTTA 1590159 33 100.0 36 ................................. TCAGACTGGGCAGAAATGCGCGAACGTCTATCTTTT 1590090 33 100.0 35 ................................. ACATGAAACACCACTCATTTATATCATAAATGATT 1590022 33 100.0 38 ................................. CAGCATGAAAGTCTGCATGTCGAACATGAGGTTATAAG 1589951 33 100.0 34 ................................. ATGAGATTTTGGGCGGTGAGCTTGTTGGTTTCGG 1589884 33 100.0 33 ................................. ACCTCCCAGGCGCTCTACAGTGACCACCCGGAG 1589818 33 100.0 33 ................................. GGGTTGCAACTGTTTGGACGCCTTGTTGTCGGA 1589752 33 100.0 34 ................................. CTGCAGCTCCAGTCCAAGCCGATCAAGAAGGGCG 1589685 33 100.0 34 ................................. GTGCATGTGGTCGGCCCCGCATGGAACCTTCCAT 1589618 33 100.0 34 ................................. TGGTTCTGGTTGATGGTGTTCTCGATGTTCTGCT 1589551 33 100.0 34 ................................. CTGCTAGGTATCCTGCCATGATGTGTAGAGTGAT 1589484 33 100.0 32 ................................. CCAAACAGGGTGGATACAATGGCACGGCGCAG 1589419 33 100.0 34 ................................. ATCCACGCCCTGAGCGGATGGTACATGCACGGCG 1589352 33 100.0 35 ................................. TTATAATTGGCCATGTCAGCAAAAGGAGTCCACGC 1589284 33 100.0 35 ................................. GAGTCCGGTGTGACGGTATGGACTGACCCCGATCA 1589216 33 100.0 33 ................................. GCGTGAATGGTGAAAAAGGGCAGGTGCATAAAA 1589150 33 100.0 33 ................................. AACACCGAAAGCACCGAACTCGGCACCGTCCAG 1589084 33 100.0 33 ................................. TCGGTGGCCTTCGCGTAGGCGTTCTGCAATGCG 1589018 33 100.0 36 ................................. TTGAATGTCCTTGAAGAATGTTTCCTTGCGATGTTG 1588949 33 100.0 36 ................................. AAATGGAGCGACTCGATCACATATCGGCGTCGCAAC 1588880 33 100.0 33 ................................. AACATCACCGGAAAACTCGTACGCACTCTACGT 1588814 33 100.0 34 ................................. GTTTACGTCACGGTTAATCTTTCGGACAGTGGCA 1588747 33 100.0 33 ................................. CCATCCCACACGGACAGTAGGGAATATGCTTGA 1588681 33 100.0 34 ................................. TCGAACACATCGTAGCGTCCGCGTGACATGTAGG 1588614 33 100.0 35 ................................. GAAGACGGGCCGTATGCCTCCGACTCCCGCAACAT 1588546 33 100.0 34 ................................. ACGATAGCCATGGCGCTGCCCAGGATCATCGTCG 1588479 33 100.0 33 ................................. AGCTGGGAGCAGTGCGTTCGCGCCGTACAAGGG 1588413 33 100.0 34 ................................. GATACGATTAAGATGATTTTCGAGCGTCGTATCA 1588346 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ====================================== ================== 46 33 99.8 33 GTCGCTCTCCTCATGGAGAGCGTGGATTGAAAT # Left flank : CAATACCGATGAGGACAGCCTGCGCTTTTATAAACTTGGCGCTCGATATGCGGATAGGATTGAGCATTATGGACGTGAACGGAGTTTGCCGGTTAATGATGTGATGATGATATAGCACAGGCAAAATGGCATGGTGCCATAACGATATGGTGTGGGGTATGCTGGGTTGAGCGTTTGAGTGTGCCGTCCGGTATTCAGAGTGTGTTTTCTAGCCAGCAGTATTGTGTTTTCGGCAAGGTGGCCGGTCTTGGAATGGTGTTTGTGCGAAGTGTAAGCGCTCATGATAAGGGACGTCTTTCGCACCTGAAAAACTATCGAAATCCGAATTGTGATTTTCGTGGGGCGTTTTGAAAACTAAATAATGGACATTAAAATGAGACAGAAAGCCAGTTGCTCGTTTTAGACATGTTGTTCGTCGTATCGGCGGTGTTGTTTGATATGCTTAAAGCTAGGCAGCTGGCTTGCGTCTCAAAAAGCGGACAAAAATGTCCAGCTGCACT # Right flank : CGGTGTCTGCATCGTTCCGGCCGCCGCGTGGATGTTGCTCTCCCTGTTTATGTCCAGTGTTCCCCGCACATGCGGGATTCCACATGTGCGGGACTGCTAGCAACGGAAAACCAGGGTTTTTGTCCGCTCGGGGCGACTTCAACGGTAATACGAGCAGGAACTGCGACTGGGTGTTTCGCATGGGGTCGCTTCTGAAAGCTATGTAAAAGAAATAGTGTATGTGAAAACGGTCGGGTGGGTGCGGATGCACGAGAAATTGGCTAACCTGTCGAATTTCTGTTTTACTTTGGTCGTTCATCTCGTGAGTGGTCGTCAAGCTAGACATATTGTGTCTCATGGGATGCAACATGTCATATGGAAATACATATGACTGGCGAATATCGCCAATGGTTCAGCCGGATAAAGGACCGGAACGCGAAAGCCCGAATCAGCGCGAGACTCCGATTGCGCTTCTAGATGGGGCGGCCGGTGGGTGACCTGCATACGGTTGGTGACGGGGC # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCTCATGGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.30,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //