Array 1 107617-106140 **** Predicted by CRISPRDetect 2.4 *** >NZ_NDGR01000009.1 Salmonella enterica subsp. enterica serovar Typhimurium strain LT19 NODE_9_length_223808_cov_25.3885, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 107616 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 107555 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 107494 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 107433 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 107371 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 107310 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 107249 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 107188 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 107127 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 107066 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 107005 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 106944 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 106883 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 106822 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 106761 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 106700 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 106638 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 106535 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 106474 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 106413 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 106352 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 106291 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 106230 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 106169 29 96.6 0 A............................ | A [106142] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125791-123749 **** Predicted by CRISPRDetect 2.4 *** >NZ_NDGR01000009.1 Salmonella enterica subsp. enterica serovar Typhimurium strain LT19 NODE_9_length_223808_cov_25.3885, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 125790 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 125729 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 125668 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 125607 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 125546 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 125485 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 125424 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 125363 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 125302 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 125241 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 125180 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 125119 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 125058 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 124997 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 124936 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 124875 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 124814 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 124753 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 124692 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 124631 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 124570 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 124509 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 124448 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 124387 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 124326 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 124264 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 124203 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 124142 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 124081 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 124020 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 123959 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 123898 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 123837 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 123776 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 34 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGAGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //