Array 1 461818-462322 **** Predicted by CRISPRDetect 2.4 *** >NZ_RPBM01000003.1 Cronobacter dublinensis strain SD05 Scaffold3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 461818 28 100.0 32 ............................ GCAATTCAAATTTGGCGACTATGCGCTGATTG 461878 28 100.0 32 ............................ ATTTCGCAAAGGGATTTAAACCCGTTCAGCGT 461938 28 100.0 32 ............................ AGAACGGATCGCGTTGGTAGCGGCCGAACAGC 461998 28 100.0 32 ............................ TTGAGAGCCATTTAAAAGGGGTGTCTCGATGA 462058 28 100.0 30 ............................ AAAACAACCGGCTTATCGATTACCTGAACC 462116 28 100.0 32 ............................ ATTTACGTCACCACTATGCCATCAATAGTTAT 462176 28 100.0 32 ............................ GCAACAGGCAAGAGCACTGGCGTGACGGCCTC 462236 28 100.0 32 ............................ ACTGACGCCTCCGGGCTTCGCCCTCCGCGATC 462296 27 78.6 0 ...T.......TA........-C.C... | ========== ====== ====== ====== ============================ ================================ ================== 9 28 97.6 32 GTTCACTGCCGCGCAGGCAGCTTAGAAA # Left flank : GGCGCTGGCGGAATTAGAGGCCACGCGCTGGCGGGCTGGGTTACAGGATTACTGCCAGAGCAGTGCAATATTACCCGTGCCTCAGGTGCAGGGCTGGCGGACCGTCTCGCGCGTACAGGTGAAAAGTAATCCCGAACGCCTGATGCGTCGCTCGGTGCGCAAAGGCTGGCTGACGGAAGAAGCCGCGCGGCAACGGCTCTGCGATTTACACGAGCAACAGACCTCTCTGCCGTGGATTCAGGTTAAAAGTCTCTCCAGCGGCCAGTACTACAGAATCTTTATCCAGCACGGCGAGCTGCTGACCGCGCCCGTCAGCGGCGTGTTCAGCAGTTATGGATTAAGCCCCAACGCGACGATTCCCTGGTTCTGACCTTTTTTAAAAATGCCTCGCTAACCTGTTGATTTATATCATGCGCTGGCGAGGCGCTAAAAAAGGGTATACGGCATACAAAATGTATAACAGGCTTTTAAAAACAAAGGACTGATTTATTTCAGCGTTA # Right flank : ATCGTATTACTGCTCCGCCAGACTTGACCTTCCTGCAAGGGGAGGGTTTAAGCTCAACGGGTGCACGTTGACGATAAGGACTGGAAGATGCAACGCCGAGATTTTATTAAGTACACCGCCGCGCTGGGCGCGTTAAGCGCGCTGCCGACATGGAGCCGGGCCGCGTTTGCCGCAGAGCAACCGGCGCTGCCCATTCCCGCGCTGCTGACGCCTGACGCCAGCAGCCGCATTCAGCTCACGGTGCAGGCGGGCAAAACCGCGTTCGCCGGGAAAAATGTCACTACCTGGGGCTATAACGGCTCGCTGCTTGGCCCGGCGATTAAGCTGCGCCAGGGCAAGCCGGTGAATGTCGAGATCCGCAATACGCTCGCCGAAGAGACGACGGTGCACTGGCACGGGCTGGAAGTGCCGGGCGCGGTGGATGGCGGCCCGCAGGGCGTCATCGCGCCGGGGCAGACCCGCAGCGTGAGCTTTACGCCTGAGCAGCGCGCCGCGACGTG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCGCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCGCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 151617-154758 **** Predicted by CRISPRDetect 2.4 *** >NZ_RPBM01000002.1 Cronobacter dublinensis strain SD05 Scaffold2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 151617 29 100.0 32 ............................. CCGGTTTACATTTCTTGCGAGCCCCCCTGGTG 151678 29 100.0 32 ............................. TTTAAACGATGGCACCAACATAACCCGCTTCG 151739 29 100.0 32 ............................. CGGCGCGTCGTGGACTGGAACGAGTATTACGC 151800 29 100.0 32 ............................. CGCCTCAGAGCGGTAATAACACTCCCCCTCTT 151861 29 100.0 32 ............................. CAATGAGCACAACGGAACCCGCCTGGCTCACA 151922 29 100.0 32 ............................. CAACCGGTAACGCGGCCCCTCATAACCACGGA 151983 29 100.0 32 ............................. CCCGGATGAAGACCACACTTTCTGGCACTCAT 152044 29 100.0 32 ............................. GTTGTAATCGAGGTCGGGATGCGCAAGCTGCG 152105 29 100.0 32 ............................. CCTGCCGAGTTGCCGGGAAAGAGTTCACACTG 152166 29 96.6 32 ............................C ATGGCAGAATGAAAATGGTGCGGATAAGCGGC 152227 29 100.0 32 ............................. CGGGAGGTGGCGGTGCGATACAGCCTGGCGTA 152288 29 100.0 32 ............................. AGCTCCGCGAAAAGGCGCTCGCGCAGGCGCGC 152349 29 100.0 32 ............................. CTGCTGCATGGCCCTGTCAGCCATCTGCATAT 152410 29 100.0 32 ............................. GTTTTGTTGTATTGCTCTTGGCTAATCTTTTT 152471 29 100.0 32 ............................. GGGGGTTGCTGTGGCTATTGAAGAATATGTCG 152532 29 100.0 32 ............................. GCCTCAACCATGCGTTAAGGACGAATGACGAG 152593 29 100.0 32 ............................. CCCCGGTGACAGCTTCTACGCAGACGGCGACG 152654 29 100.0 32 ............................. CGTCTACTCACCTGCCTGGAGCGCGCTATCTG 152715 29 100.0 32 ............................. CTCTCTTGTATGTGGAATGTTCGTCGCTGTTG 152776 29 100.0 32 ............................. CGTGGCGCGGCGCGGTCTGGCGCGCCCCGAGG 152837 29 100.0 32 ............................. GTGAGAAAATGAATGAAATCCCGCGCCTTTAT 152898 29 100.0 32 ............................. ACGTTCACAGGAGCGCCTCATTACAGGGGCGC 152959 29 100.0 32 ............................. CGTCTTTTGGCTGGCGTTTGAGGTTAGGGGCG 153020 29 100.0 32 ............................. GCCCGCCAATGGGTAGAGTGATCGTTTCCGGC 153081 29 100.0 32 ............................. CATCAGTCGGCAAACTATTTTTTTACTGGTAA 153142 29 100.0 32 ............................. GCTCCGTACCGAGCGCTTCGGCAATGATTTTT 153203 29 100.0 33 ............................. CCGGAGACGGGCCCGCGGATCAACTGCACAAAC 153265 29 100.0 32 ............................. GATTTGGAGAAAATCATTATTTTTGCGCGAGT 153326 29 100.0 32 ............................. TGGATTTCGACGAGCCTGCCAGCGAGAACGCC 153387 29 100.0 32 ............................. TGGAACGCCTACAGCGTAGAAATGCCGGTGGA 153448 29 100.0 32 ............................. GCTGGCCGATGGAAGTGGCGAAGAACGGCAAA 153509 29 100.0 32 ............................. CATGCTTAACCCCACCCAAACCCAATTCTACG 153570 29 100.0 32 ............................. GAAGATATTGGGCTGATGCCATCTAATACAGG 153631 29 100.0 32 ............................. CCGTCGGCACCGCCATTGGGGATATTCACCAG 153692 29 100.0 32 ............................. CCAACAACGTCAGCGACGCATCGCGCTTCTTC 153753 29 96.6 32 ...........................T. GAAGCGAGCAAGAAAAGAGCGCCGTTATCCAA 153814 29 100.0 32 ............................. CAATTTTTGATATTCATTATTCGCACTATCTG 153875 29 100.0 32 ............................. CTGATTCGGCTTGTTGTAGAGGGCGACGGCGT 153936 29 100.0 32 ............................. AGCTGGGATGGTGGTGGAGTAAATCGAATCAG 153997 29 100.0 32 ............................. CCAATGATGAACATCAAAGGCAAAAAGTATTT 154058 29 100.0 32 ............................. ACGGCAAAAACCCGAACGTGACGCGGCGCGAA 154119 29 100.0 32 ............................. GATGTTTTTAACCGTTTCCAGCACATTTACGC 154180 29 96.6 32 ........T.................... GTGCTTAACCCGTTCTGGCTGCCGGTAAGTTG 154241 29 100.0 33 ............................. AGATCAGCTGGGAGCTGGTCGACAAAATCTGGC 154303 29 100.0 32 ............................. TTGCCACTGCTACCGGCGCTCTCGCCGGTTAC 154364 29 100.0 32 ............................. CGTGTGCGCGACGCGTAATTTGTCCCAGTCGT 154425 29 100.0 32 ............................. CGCCGATTCCTCGGTCGCTACGGTCACGTTCG 154486 29 100.0 32 ............................. ACCACCGGGGCGACACGGTATACGACACCGCC 154547 29 100.0 32 ............................. GAGGAAATAGTTTTAGAAAATTCCTGCCCGAT 154608 29 100.0 32 ............................. GATACGTATAACCCAAACGACGATATCGAGTC 154669 29 100.0 32 ............................. CCCCTCAAATTTGGCAGTTAACGCGACAGTAA 154730 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 52 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ACGAAAGCTTTAAATGGATGATGGCGCACAACATCGCCTTTATTGTCGTCAATATCAACATCAATTATCGCCGTCCTGCGGTGCTTGGCGACGTGCTGACCATCACCAGCGAGATGAAACAGCTCAATGGTAAAAGCGGAGTGCTGAGCCAGGTGATTACGCTGGGGCCCGAAGACGAAGTAGTCGCCGACGCGCTCATCACGTTCGTGTGTGTCGATCTTAAAACCCAGAAAGCGCTGCCGATTGAAGGCGAACTGCGTGAAAAACTGGAAAATATCACAGGGTAAATTCTGCAATCACGCTGCCTGTGCGTGTCGTCATGGACTTCCACTTACCGAAAGCGAACAATCCGGTAGATGTTACCGGCCCGAAAGCACGCTGAAAAAAGGCTTTTAAAATCAACAGGGCAGCCGCTCTTTAACAAGATGGGTTGTGAAGTAAATGTTGGTAGAATGTTGGGGTCGATAAAAGTTTAAAGAAAACAACAGGTTGTTTTTAGA # Right flank : GAACCCGTTCGCCGCGGCGCAAAAAACTCATCTCTGTCATTCGTGCCAGCCCGAATATCCAGCTCAACCACCCGACAAAGCAAACATTCGCAACCCTCTCCCAACCTCCATATTCTTCAGCGGCGTTTATACTTCAAAACCAATATGAAATTTCGCAACACTGCGCAACGAAGGAGAGGCTATGCGGGTACACCATCTTAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTATGACGGCTTCAGCAAAGGGTTGCACGCGCATCTGATTTGCCACTGTCTGCTGATTGAAACCCAAAATAACGGACTCGTGCTGGTGGATACCGGCTTCGGCTGCGACGATATGCGCCATCCTGGCCGTCGTTTGCCCCTCTTTTTCCGGGCGCTGAATAACATTCAGTACCGTGAATCATTAACGGCGCTGCATCATATTAAGGCGCTCGGTTTTAAGCCGGAGGATGTACGGCACATTGTACTGACGCATCTGGATTTCGATC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 181200-183730 **** Predicted by CRISPRDetect 2.4 *** >NZ_RPBM01000002.1 Cronobacter dublinensis strain SD05 Scaffold2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 181200 29 100.0 32 ............................. CCCCGGCGCTCGGTTGCGTGGCGGTATTTACC 181261 29 100.0 32 ............................. CGTCCGCCACTGGTGACATCCCATGAGCCAAA 181322 29 100.0 32 ............................. TCAATCATTTTCACCCAGAAAATCATGAATAT 181383 29 100.0 32 ............................. ACGGCGAACTCGATTGCCTGGTGCTTTTCCGT 181444 29 100.0 32 ............................. GCAATGGAAACCGATTCCGACCCGGACGGCGG 181505 29 100.0 32 ............................. CTTGTTGATGAGGTGAGACTTTGCTTAATGCT 181566 29 100.0 32 ............................. CGGCGGCTGAACGCGTTATTGACGCACATGGC 181627 29 100.0 32 ............................. AGGCCATCAAACACGTTATCGCCACTCATAGC 181688 29 100.0 32 ............................. CCCGCGCGGAGCGGGCAACAATCATGGAGTAA 181749 29 100.0 32 ............................. ATGGCCATGACGTGAGCGCGGCCCTCGCTGAG 181810 29 100.0 32 ............................. CCAGCTGACTGCTTGGCAGTGACAATGCAGGC 181871 29 100.0 32 ............................. TCGCAGGGGTAGATCCGTCAGCGGTTTCGCAG 181932 29 100.0 32 ............................. CGGGCAATAATATCTGCTGGATATCAACTCGT 181993 29 100.0 32 ............................. TGGTATTTAAACCGTAACCACCGGCCCAGTCC 182054 29 100.0 32 ............................. CCTTGTGATAGTGAATATATAATTCGACATCG 182115 29 100.0 32 ............................. AACGCCAGTATTGCCGGCATATCTCCGTGTTT 182176 29 100.0 32 ............................. CGGATTTTTCGTCCGAGGAATACGGCCAGATT 182237 29 100.0 32 ............................. GCTCGCGGAAAAGCTTGCTGGGCCCGGCTTCG 182298 29 100.0 33 ............................. TGGGGCGAACTCTCACTCAAACTAACCACCGGC 182360 29 100.0 32 ............................. CATTCCGGACGCTCCTCGCCGAACAGGTCGAG 182421 29 100.0 32 ............................. TTACCCGATATAGCCGAGTTAATGGAGGCAGC 182482 29 100.0 32 ............................. TTCAGATTCTGGCCCCCTCAACGCCGAGGCCG 182543 29 100.0 32 ............................. ATATTGTTATCATCCCATTGTGGCATTGTGCT 182604 29 100.0 32 ............................. CCTGGAGATTCACATCAACACTCCGAGTGAAC 182665 29 100.0 32 ............................. GGTGGCAAACGTGCGTGAAGGGATTTCGACGA 182726 29 100.0 32 ............................. AGTTAACCCGGGACCGGACATTCCGATCCTCT 182787 29 100.0 32 ............................. TCCCGGAGTCAGCGGGGACCGCGTAACCGGTC 182848 29 100.0 32 ............................. CCCGCCACTGTTGACGCAGCCGAGGTCGTTGC 182909 29 100.0 32 ............................. GTAGAGCGGCGCTGGCACTCAGCTATTACCAG 182970 29 100.0 32 ............................. CAGATCGCAACCACTTTAATCCGGCAGGCCTG 183031 29 100.0 32 ............................. CGTTTACTCAGCAGTAAAAGATTTAGAAAATA 183092 29 96.6 32 ............T................ GGCAGGGCAAGGCAGGTCTTCGCGGTGCTCCC 183153 29 100.0 32 ............................. CGCGCGCCTTTTGTTTAACGAGCTCACAAAAA 183214 29 100.0 32 ............................. TAGTCATAGCCGGCGAGGAACTGCAGAAATTA 183275 29 96.6 32 ............T................ ACCGCAGCAGTCACATTCGAGCCAAACTTCGG 183336 29 96.6 32 ............T................ TATCACCGACATAGTCTGCGAAAACTGCAAGT 183397 29 100.0 32 ............................. GCATAAAGGGTGTCAGTGATTGGCAGCTCCAG 183458 29 96.6 32 ............T................ CGGCAACCCGCGTTTTGCCCTGAAAAATATAT 183519 29 100.0 32 ............................. GTTGCGGCAACGAAGAAAGCCTCACGCGCACA 183580 29 100.0 32 ............................. CTTCTCGCTCTCGCCACCGGCCAGCGCCGTGC 183641 29 100.0 32 ............................. GATAAAGGGAAGAAACAACGCGCGCAGCCAGC 183702 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 42 29 99.7 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : GAAGTGCTTTCCGCAGGTGGAATTTCACCTCCTGAGCCCCCCGCAGATGCCCAACCGCCCGCTATTCCACTGGCAGATTCGCTCGCCGAAGCGGGCTTCAGGAGCCGCTAATGAGCATGCTGATGGTTGTCACCGAAAACGTGCCGCCGAGACTGCGCGGGCGGCTTGCCATCTGGCTGCTTGAACTGCGCGCCGGGGTTTATGTCGGCGACGTCTCGAAGCGGGTACGTGAAATGATCTGGCATCAGATAACCGAGCTCGCGGAAGAGGGCAATGTCGTGATGGCCTGGGCTACGAATAATGAATCCGGCTTCGATTTCCAGACGTATGGCGTTAACCGACGCATTCCGGTGGATTTAGACGGCCTGCGCCTTGTCTCATTTTTACCCCTTCAGAATCAGTAGGTTAACTGCTCTTTAAGAATGTGGAGATGTAATAAACAGGTTGGTGGATTGTTGGATGTGAAAAATTTCCTTATAGAACAGTTGTATAGCTTTAGA # Right flank : GGTCAAAGAGTCTGGTAGACGGAAAATCCGATCTGTTGCGCGCCAACCGCCCGAGCCAGCACTGCGCCAGCCATAAGCTCTCGGCACCTGCACAGCCCTCACCGCGCGTAATAGCGCTTTCCGGTATCGTGCTAACCTCGCTTTATTAAGGCTACAGATGCATAGCTGATGACGTTTTGCGCATTTTTTCATTCAAATCGCGCTGTTTTACGCTCCGCTTGCCCGGATTGCGCAATAAACCAACATCCGGCGCGCGTTGGGTTGCAATCGCCTGGGGCAACAGACATAATGCGCCCTGCGCGTTTAACGACGCTCTCAATGGGGGCCCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAAGGAAGCAGCCAAGGCAGATGACGTGTGTGCCGGGATGTAGCTGGCAGGGCCCCCACCCATTTCTGGCGCTCGCCGCGACAACATGCTGCCGCTTCTCTCCTTCAGAGTATCCCTCACTGCCTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //