Array 1 261-49 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJHPD010000026.1 Aerococcus urinae isolate Au-26-U84, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 260 29 100.0 32 ............................. AAAGAATTAGGAGGATAAAAACATGCCAGAAA 199 29 100.0 32 ............................. TATGAAGTTGTAAGATGAGTTCTTCGTCTACC 138 29 96.6 32 ............................T CCTTATAGTTACCTGCACAGATTTGATACTTA 77 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 99.2 32 CTTTTTCCCGCACATGCGGGGGTGATCCC # Left flank : ATGCGGGGGTGATCCTCATCACCCCTTAGCTGATCTCACAAGAGCGA # Right flank : CGAACATATCAGTCTAAATCATGAGGAAGTCGACTTTTTCCCGCACATG # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTTCCCGCACATGCGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTTCCCGCACATGCGGGGGTGATCCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.80,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 152740-153440 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJHPD010000001.1 Aerococcus urinae isolate Au-26-U84, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 152740 29 100.0 32 ............................. TCTCAACTCAAAAGTTAGGCGAAAGAATTAAC 152801 29 96.6 33 ............................A CGGCTATACCCAAAGGGATATAGCTAATATTGT 152863 29 100.0 32 ............................. ATCACTACCATTGAAGGCAATACTGGGAATCC 152924 29 100.0 32 ............................. AGTTACATTTCTAACACCACCAGCAAACACTT 152985 29 100.0 32 ............................. TATAAAGAGATCGCTTTTGAAATGGATCAAAC 153046 29 96.6 32 ............................C ACTCACCTCCTTCCTTTAAGCGAAAGAGCGGA 153107 29 100.0 32 ............................. GCATCAAAGACAAACCGTTACCTAGTTCGTTT 153168 29 96.6 32 ............................C AGTTAAGTCATGGGAGCGGTCAACAGGCTCAA 153229 29 100.0 32 ............................. CATCACCCCTTAGCTGATCTCACAAGAGCGAT 153290 29 96.6 32 ............................C GAACATATCAGTCTAAATCATGAGGAAGTCGA 153351 29 96.6 32 ............................C AAAGCCTCCCACATCTTTAATCTCGTCCCGCT 153412 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 12 29 98.6 32 CTTTTTCCCGCACATGCGGGGGTGATCCT # Left flank : GCAAATTGCTATGTGCTTTCAAGCGTATCGAAGCGAGGATTGGCAGACCCAGTTTGATTAATTCAGAGAGAATATAGTTGAAGTAAGAAGGGAGTGAGGGGAATGATGCCTTATAAAAATCCTAGTCCAGGTAAGATTAAAAACGCCCACCCACTCTTAGTGACTTGTATGCAGTGTAAACACGATCTCTGTGTTTACTGGAAGGTTGGCCGCGGGAATCTGATCAAATTACAAATTCACCGAATTATTGAAGCTGAATATGACTTTGGTCAACGGGACAATGCCTTGTTGTGTCCACATTGTCAGGAACAACTGGGTTCCCTTAGTGAACATAAGGGACGGCCTTGTTATTTCTTGCATCGGGGCCGAGTACAGACTAAACGTTTGCAGCATTATAAATGCTAGCAAAAGCCCTTGTCTTTTTGTTATGATAAAATAAAAGTAAATGAAATTGGGTAGGTTCGGAATTACAAAGCTTGATTTGATAGGGATCTTTTAGT # Right flank : TCATCACCCCTTAGCTGATCTCACAAGAGCGATCTTTTTCCCGCACATGCGGGGGTGATCCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTACTTTTTCCCGCACATGCGGGGGTGATCCCGAACATATCAGTCTAAATCATGAGGAAGTCGACTTTTTCCCGCACATGCGGGGGTGATCCCAAAATAAGAAGTTTGAGAAAACAAAGAGGTTGCTTTTTCCCGCACATGCGGGGGTGATCCCGTGTTAAGATAAAAGTAAGTTAAGGGAAAGCACTTTTTCCCGCACATGCGGGGGTG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTTCCCGCACATGCGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTTCCCGCACATGCGGGGGTGATCCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 153733-154919 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJHPD010000001.1 Aerococcus urinae isolate Au-26-U84, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 153733 29 96.6 32 ............................C GAACATATCAGTCTAAATCATGAGGAAGTCGA 153794 29 96.6 32 ............................C AAAATAAGAAGTTTGAGAAAACAAAGAGGTTG 153855 29 96.6 32 ............................C GTGTTAAGATAAAAGTAAGTTAAGGGAAAGCA 153916 29 100.0 32 ............................. TGGTTTGTCCTAGTATGTAGTCGATGCTTACC 153977 29 100.0 32 ............................. ACAAGCTATAACTATCATCACTCATAATATAT 154038 29 100.0 33 ............................. TATTGCCGTAATTAAGTCTACTATTTGGCGTTT 154100 29 100.0 32 ............................. TCGAAACTAGGCGCTTTGCCTAGTCTAGGGAA 154161 29 96.6 32 ............................C CAATTGGTCTATGTTTAATTTCATTTCAATTT 154222 29 100.0 32 ............................. GTCGTAAGCGATCAAGCTAATAAATGTTTTCA 154283 29 100.0 32 ............................. ACCCTGACGATCGTTTATACGATATAGATGAA 154344 29 100.0 32 ............................. GGGAGTCTGAAACTCTATACCTTAAAAAGACA 154405 29 96.6 32 ............................A TCGAGCAGATATTACTAGTCAGATTAAAAATA 154466 29 96.6 32 ............................A CTATCAAGTGATTCTTTTAAATCTCCTTGATA 154527 29 100.0 31 ............................. TCAGACCGGCCGTCTACCTTGGCTAGTAACT 154587 29 96.6 32 .C........................... AAAATCAGTTATCGAGAAGCCCAACAGATTCT 154648 29 96.6 32 ............................A TCGAGCAGATATTACTAGTCAGATTAAAAATA 154709 29 96.6 32 ............................A CTATCAAGTGATTCTTTTAAATCTCCTTGATA 154770 29 100.0 31 ............................. TCAGACCGGCCGTCTACCTTGGCTAGTAACT 154830 29 93.1 32 .C..........................C AGTGGAATAAGTCATTCTGTCACCAGCTAAAC 154891 28 75.9 0 ......-....C.......T.T.A...TG | A [154909] ========== ====== ====== ====== ============================= ================================= ================== 20 29 96.9 32 CTTTTTCCCGCACATGCGGGGGTGATCCT # Left flank : TTCCCGCACATGCGGGGGTGATCCTCATCACCCCTTAGCTGATCTCACAAGAGCGATCTTTTTCCCGCACATGCGGGGGTGATCCCGAACATATCAGTCTAAATCATGAGGAAGTCGACTTTTTCCCGCACATGCGGGGGTGATCCCAAAGCCTCCCACATCTTTAATCTCGTCCCGCTCTTTTTCCCGCACATGCGGGGGTGATCCTCATCACCCCTTAGCTGATCTCACAAGAGCGATCTTTTTCCCGCACATGCGGGGGTGATCCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTA # Right flank : GAAAGGAAGTTAGCTATGTATTTATACTATGCAATCTTTACTCCATCAGAAGACAAATATGCTATTGAATTTCCAGATTTAGATGACGCTTACTCTTTCGGTGAAGATATGAACGATGCCCTCTATATGGCTAAGGATCTTCTTGAAGGATGGTTAATTGTAGCCAAAAAAGAAGGCGATTCAATCCCCAAAGCATCGTCTCCTGATGACTTGAAAATTTCTGAAGATGCATTACTGGTTCCTATTAAAGTGGATCTTGAACTTAGCTAATTGAAACATAGTCAACAATTGCTCGAGAAAACTTTAAACACTTTATGATATTTAAAGAAACTTAGTCTAGAGGCAGGGGCTTTTCGCTCATGAAGAGGTCCCCCCTTAGTCTGGTGCTTTATTGGTAAGCGTAATATATGATAATAGAAAGTAGGAGACTCGCTGTGACGCAAGAAAAGAAACGCCCTCGTGGCCGTCCAGCAACAGGGCGAAAGCGCGATAAAACTTTG # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTTCCCGCACATGCGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTTCCCGCACATGCGGGGGTGATCCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [5.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 173870-174689 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJHPD010000001.1 Aerococcus urinae isolate Au-26-U84, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 173870 29 100.0 32 ............................. ATATTTTTGATACCTATCTTGATTATGACTGG 173931 29 96.6 32 ............................C GAAATCTGGGAAAGTATCAAGACGTACTTTGC 173992 29 100.0 32 ............................. GGCATGACTATCGGAGGCGAGTCTATCTTTAC 174053 29 100.0 32 ............................. AAAATAATCGTCCCACAAGTGGTGGACACATG 174114 29 100.0 32 ............................. GTGTCTAGTAATCCCATAATTTAATCTTCTCC 174175 29 96.6 32 ............................C AAGCTAACGTAGGGCTAACCTACAAGGTTGAT 174236 29 96.6 32 ............................C GACAACTTGATCTCCAACTCAATGGGATCATA 174297 29 96.6 33 ............................C CTAAGTTTTAAGCCATTCGAGGGCAAAATAAAA 174359 29 100.0 32 ............................. TCTTGCTGCCTCGTTAACTTGTTTTTCTGCCG 174420 29 100.0 32 ............................. ATACTTTTGGCAAAGACAAGATTAAAGCAGTA 174481 29 100.0 32 ............................. GGTACGAATAACTCCATGATTATCCACCCGGG 174542 29 96.6 32 ............................C GCTGACCTGGAATGACTTCATCCCCGCACTAA 174603 28 93.1 32 ......................-A..... GTTTGATCTAGCAACATCTTTGCCTAATCCAA 174663 27 86.2 0 .................--.......TT. | ========== ====== ====== ====== ============================= ================================= ================== 14 29 97.3 32 CTTTTTCCCGCACATGCGGGGGTGATCCT # Left flank : CTGAAAGATTCTATTATAGAAATTGCAGCACTTACGATTAAAAATGGAGAAATAGTTAAGGAATTTGAATGTCTTATAAATTATGAGGGAAAATTGCCTCTTGAAATTACTTCATTAACAGGTATTGATGATCAACTTTTGAAAAAAGAAGGTCAGAAACTAGAAAATGTTTTGAAAGAGTTCAAAGCATTTGTTGGTGAGGTAGATCTTGTTGGCTATAATATTTCCTTTGATATTAAATTTATTAATTATCATCTAAAAAAATTAAACTTACCTAAATTAAATAACAAAAGTATCGATTTAATGAGTTTTGTTAAAAAGGAAAAATTATTTTTGCCTAATTATAAATTAGAATCAGCCCTAACGGCCTACGGGATTAACGAAGAAGTTCCTCATAGAGCTTTAGCTGATGTGCATTTGATTTATGGGTTAGCGCTAAAAGTAAATAAATTTTTAAAATTTATGAATAGACAGTCGCGTAGTTAAAGGGATCTTTTAGT # Right flank : TGTTTAATTGTTATAAGATTATTTTTATAATCATTCTTCCATCTTCTAATTTTGGACAGAATAAAAGCACCTCACCTTCGATTGGCTAGTGCTTATTAGCATATTGGTTCTACTTTAGGTAAATTAATAAACTCTTTATAAGCTTCAACTACTTCACTTGGAGCACTTGGGCTAAGTCTTCTCTTGTCTTTAGAATCAGAAAAATCAAAATAAATATAATCTTCTATGATTTTATATAATTTTTCTTCTTTTTCAATTAAATTCATTTTTTACTCCTTGATAATAGCTATTTTAAAATCAAAGTTTGAAAGTGCACCAATAAGTGATACTTCAGCAAAAATTATACTTTCTTTCTTATTAATCGATTTCATTCCCAGATATTTACTAATGCCTTTAGTTAAATTATATCCGTCGTTATTTAACATATCAACGATTGCATCAGCATTTTCAACAAAATCGCTATAAAATAGATGTCTCGATATCGGATTACTAATACACTT # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTTCCCGCACATGCGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTTCCCGCACATGCGGGGGTGATCCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //